jgi.p|Nanoce1779_2|627870, mRNA_404 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627870
Unique Name	mRNA_404
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1207
Alignment location	scaffold_3:1000938..1002260 +

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Properties


Property Name	Value
TranscriptId	627956
Track	FilteredModels2
ProteinId	627870

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1000938..1002260 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627870	gene_404	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627870	mRNA_404-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_404	CDS_404	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1000938..1002260+
coding sequence from alignment at scaffold_3:1000938..1002260+

mRNA sequence

>mRNA_404 ID=mRNA_404|Name=jgi.p|Nanoce1779_2|627870|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp
GCGCTCCGCTTTTGTGATCGAATGAGGTGCCGTCATCATCACATAATCGC
CCGAAGTCATTCATGTTCTCCGCAAAACTCTTCCCCCTACTAACACAGAC
TCTATCAGCTGCAGCAGCGGTAGCAGTAGCAGCGGCCACAGGATGGAGCG
ATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGTACGTGACGTTCAAGG
CTGGGAGGTGCGATGTGGAAGATAAGGGCAATAACAAGTTTCTGATCACG
CCGGACCGGCGCAAGGGCCAACTGACCCTCCTCAAGCACGTTGACGAGCT
CACGCACCTGCAGTGGAAAGACCGGACAACCAACACAGTAGTTGAGGATG
TGATTGCCATGCCCCACGACGCCTACTTTGCCCGGGTCAACACGGGCCGG
GAAAAAGATCGCGTGTACATCTTGCAATATCAGGGGGGTTCCTCCCGTCG
CTTCTTCTTCTGGATGCAAAGCGCATCAGATGAGAAGGACGAAGAGCTTG
TGAAGCGCCTGAACGAATGCATGACCAACCCTCCCCCCAGTGAGGCGGAG
GAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGAGGTACGGGAGATGCGCC
GGCTTCGCAGCAAAATGTGGAAGACCTGCTTTCGTCCATGCTGGGGGGCG
GGACCACGGGGGCCCAGACCCGCGTGCCCGGCCCGTCGGCTGCGGTAACG
GCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCCACAGGACGTGGAGGGCA
ACTGACTGCGGCGGATTTGCAGCGCGCCATGATGAATCTGACGGGCATGC
AGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCTTGACCGAGATTGTCAAC
GCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCCGACCCGGCGGTGCAAGA
ACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCAGACACCGGAGCAGCTGG
AGGCGATCATGCATAGCCCTCAATTCAGGTCGACTCTGGGAAGCTTGACG
GGGGCGTTGCAAACGGATAATTTCAATTCTATTATGAGTAATTTTGGCTT
GGACGCAAGCAGAGGGATGGAGGCCCTGTCGGCGGGGAATAACGTGGACG
CGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGCAGGAGGGAGAGGCCGGG
GACCGGGGTGAGGGGGGTGAGAAGATGGAGGAGGAGAAGGATGAGGGGAA
AGAGTAA

protein sequence of jgi.p|Nanoce1779_2|627870

>mRNA_404-protein ID=mRNA_404-protein|Name=jgi.p|Nanoce1779_2|627870|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MERFFGSFVPTTREYVTFKAGRCDVEDKGNNKFLITPDRRKGQLTLLKHV
DELTHLQWKDRTTNTVVEDVIAMPHDAYFARVNTGREKDRVYILQYQGGS
SRRFFFWMQSASDEKDEELVKRLNECMTNPPPSEAEEGGAGGTGAAGGTG
DAPASQQNVEDLLSSMLGGGTTGAQTRVPGPSAAVTAPASGSSSAGATGR
GGQLTAADLQRAMMNLTGMQQQQQQQRTVPLTEIVNADEVLRSGVLSDPA
VQEQLIPLLAEGQQTPEQLEAIMHSPQFRSTLGSLTGALQTDNFNSIMSN
FGLDASRGMEALSAGNNVDAFLQALLALQQQEGEAGDRGEGGEKMEEEKD
EGKE*

mRNA from alignment at scaffold_3:1000938..1002260+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_404 ID=mRNA_404|Name=jgi.p|Nanoce1779_2|627870|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp|location=Sequence derived from alignment at scaffold_3:1000938..1002260+ (Nannochloropsis oceanica)
GCGCTCCGCTTTTGTGATCGAATGAGGTGCCGTCATCATCACATAATCGC
CCGAAGTCATTCATGTTCTCCGCAAAACTCTTCCCCCTACTAACACAGAC
TCTATCAGCTGCAGCAGCGGTAGCAGTAGCAGCGGCCACAGGATGGAGCG
ATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGGTAAGTTTTGCTCGCG
TTCCTCTCCCTTCCTCCTCGCCTCTCTCTCTCTCTCTCTGTCTCTCTATC
TCTCACCCCCATCCTCCTCATACCTCACAACCTAATCCTGCCACCTACAG
TACGTGACGTTCAAGGCTGGGAGGTGCGATGTGGAAGATAAGGGCAATAA
CAAGTTTCTGATCACGCCGGACCGGCGCAAGGGCCAACTGACCCTCCTCA
AGCACGTTGACGAGCTCACGCACCTGCAGTGGAAAGACCGGACAACCAAC
ACAGTAGTTGAGGATGTGATTGCCATGCCCCACGACGCCTACTTTGCCCG
GGTCAACACGGGCCGGGAAAAAGATCGCGTGTACATCTTGCAATATCAGG
GGGGTTCCTCCCGTCGCTTCTTCTTCTGGATGCAAAGCGCATCAGATGAG
AAGGACGAAGAGCTTGTGAAGCGCCTGAACGAATGCATGACCAACCCTCC
CCCCAGTGAGGCGGAGGAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGAG
GTACGGGAGATGCGCCGGCTTCGCAGCAAAATGTGGAAGACCTGCTTTCG
TCCATGCTGGGGGGCGGGACCACGGGGGCCCAGACCCGCGTGCCCGGCCC
GTCGGCTGCGGTAACGGCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCCA
CAGGACGTGGAGGGCAACTGACTGCGGCGGATTTGCAGCGCGCCATGATG
AATCTGACGGGCATGCAGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCTT
GACCGAGATTGTCAACGCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCCG
ACCCGGCGGTGCAAGAACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCAG
ACACCGGAGCAGCTGGAGGCGATCATGCATAGCCCTCAATTCAGGTCGAC
TCTGGGAAGCTTGACGGGGGCGTTGCAAACGGATAATTTCAATTCTATTA
TGAGTAATTTTGGCTTGGACGCAAGCAGAGGGATGGAGGCCCTGTCGGCG
GGGAATAACGTGGACGCGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGCA
GGAGGGAGAGGCCGGGGACCGGGGTGAGGGGGGTGAGAAGATGGAGGAGG
AGAAGGATGAGGGGAAAGAGTAA

Coding sequence (CDS) from alignment at scaffold_3:1000938..1002260+

>mRNA_404 ID=mRNA_404|Name=jgi.p|Nanoce1779_2|627870|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_3:1000938..1002260+ (Nannochloropsis oceanica)
ATGGAGCGATTTTTTGGCAGCTTTGTCCCCACGACGCGCGAGTACGTGAC
GTTCAAGGCTGGGAGGTGCGATGTGGAAGATAAGGGCAATAACAAGTTTC
TGATCACGCCGGACCGGCGCAAGGGCCAACTGACCCTCCTCAAGCACGTT
GACGAGCTCACGCACCTGCAGTGGAAAGACCGGACAACCAACACAGTAGT
TGAGGATGTGATTGCCATGCCCCACGACGCCTACTTTGCCCGGGTCAACA
CGGGCCGGGAAAAAGATCGCGTGTACATCTTGCAATATCAGGGGGGTTCC
TCCCGTCGCTTCTTCTTCTGGATGCAAAGCGCATCAGATGAGAAGGACGA
AGAGCTTGTGAAGCGCCTGAACGAATGCATGACCAACCCTCCCCCCAGTG
AGGCGGAGGAAGGTGGCGCCGGTGGGACAGGTGCCGCGGGAGGTACGGGA
GATGCGCCGGCTTCGCAGCAAAATGTGGAAGACCTGCTTTCGTCCATGCT
GGGGGGCGGGACCACGGGGGCCCAGACCCGCGTGCCCGGCCCGTCGGCTG
CGGTAACGGCTCCCGCATCTGGTAGCAGCAGCGCCGGCGCCACAGGACGT
GGAGGGCAACTGACTGCGGCGGATTTGCAGCGCGCCATGATGAATCTGAC
GGGCATGCAGCAGCAGCAGCAGCAGCAGCGGACGGTGCCCTTGACCGAGA
TTGTCAACGCGGATGAAGTGCTCCGTTCGGGCGTGCTTTCCGACCCGGCG
GTGCAAGAACAGCTGATTCCCTTGTTGGCGGAGGGGCAGCAGACACCGGA
GCAGCTGGAGGCGATCATGCATAGCCCTCAATTCAGGTCGACTCTGGGAA
GCTTGACGGGGGCGTTGCAAACGGATAATTTCAATTCTATTATGAGTAAT
TTTGGCTTGGACGCAAGCAGAGGGATGGAGGCCCTGTCGGCGGGGAATAA
CGTGGACGCGTTTTTGCAGGCGTTGTTGGCGTTGCAGCAGCAGGAGGGAG
AGGCCGGGGACCGGGGTGAGGGGGGTGAGAAGATGGAGGAGGAGAAGGAT
GAGGGGAAAGAGTAAATGGAGCGATTTTTTGGCAGCTTTGTCCCCACGAC
GCGCGAGTACGTGACGTTCAAGGCTGGGAGGTGCGATGTGGAAGATAAGG
GCAATAACAAGTTTCTGATCACGCCGGACCGGCGCAAGGGCCAACTGACC
CTCCTCAAGCACGTTGACGAGCTCACGCACCTGCAGTGGAAAGACCGGAC
AACCAACACAGTAGTTGAGGATGTGATTGCCATGCCCCACGACGCCTACT
TTGCCCGGGTCAACACGGGCCGGGAAAAAGATCGCGTGTACATCTTGCAA
TATCAGGGGGGTTCCTCCCGTCGCTTCTTCTTCTGGATGCAAAGCGCATC
AGATGAGAAGGACGAAGAGCTTGTGAAGCGCCTGAACGAATGCATGACCA
ACCCTCCCCCCAGTGAGGCGGAGGAAGGTGGCGCCGGTGGGACAGGTGCC
GCGGGAGGTACGGGAGATGCGCCGGCTTCGCAGCAAAATGTGGAAGACCT
GCTTTCGTCCATGCTGGGGGGCGGGACCACGGGGGCCCAGACCCGCGTGC
CCGGCCCGTCGGCTGCGGTAACGGCTCCCGCATCTGGTAGCAGCAGCGCC
GGCGCCACAGGACGTGGAGGGCAACTGACTGCGGCGGATTTGCAGCGCGC
CATGATGAATCTGACGGGCATGCAGCAGCAGCAGCAGCAGCAGCGGACGG
TGCCCTTGACCGAGATTGTCAACGCGGATGAAGTGCTCCGTTCGGGCGTG
CTTTCCGACCCGGCGGTGCAAGAACAGCTGATTCCCTTGTTGGCGGAGGG
GCAGCAGACACCGGAGCAGCTGGAGGCGATCATGCATAGCCCTCAATTCA
GGTCGACTCTGGGAAGCTTGACGGGGGCGTTGCAAACGGATAATTTCAAT
TCTATTATGAGTAATTTTGGCTTGGACGCAAGCAGAGGGATGGAGGCCCT
GTCGGCGGGGAATAACGTGGACGCGTTTTTGCAGGCGTTGTTGGCGTTGC
AGCAGCAGGAGGGAGAGGCCGGGGACCGGGGTGAGGGGGGTGAGAAGATG
GAGGAGGAGAAGGATGAGGGGAAAGAGTAA

Synonyms

Publications