jgi.p|Nanoce1779_2|422887, mRNA_4039 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|422887
Unique NamemRNA_4039
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1060
Alignment locationscaffold_8:700982..702997 -

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Properties
Property NameValue
TranscriptId422973
TrackFilteredModels2
ProteinId422887
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:700982..702997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|422887gene_4039Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|422887mRNA_4039-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4039CDS_4039Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Nanoce1779_2|422887|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp
CACACAAGTCAAGGCCATCTTAAAGTAGGCCTTCCTAATAACAGCAACCG
TAGCATCCGCAGGCACGCCGAGGATCTCGTAGAGTGTCTTCTTTGTGCCA
AAGGCTTGGTTGATCTGGGCTTGGGGGCTGGACATGGTGCTGAAGGGGGC
GGGAGGAGGAGCAAGACGAGGGAGGAAAGCAAGGTTGGACCAAGCGGATG
AGTCCTACGGCTGGAAATGTCGCTAAACTGTGCATGCATTGTGAAGCGGG
TTGGGAGTGATACTGGGGCATGGCAGCAATAAGTTCCTAGCTTGTGCAAA
GCATTCGCACAGAAAGCACAAGACAGCGATTCCTCATGCTATTGCTGGTA
CAATCACCTTGCTGATTGCTCATACTATCACAATCATCCCATACCCACAA
CACACACCACGACAGAGACCAGTAATGGCTGCAATCACTGCCACGGTGAC
GACAGAAGCCGGGCGGCGCTTGCGGGACATGCTGCAAGTGCTGGAAAAGC
GGGCACCCTATTTGCGTCCGAATCTGATCCCCAAAAGCTGCAAGCCTTTC
ATGGACTTGGCGGCCATGTGCAGCACAGAGGCACAGCGGCAGGCTGTGCA
GCGTGTGCTGGCGCAGCAACGACGGAAAGCGTATTTGAGCGAGGTCGAGG
CAGACCTCTACTGTGTAGAAACGATTTTGAATATGCACAGCCGCGGCGAC
AATGACGAGTTGCGCCTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCA
CGACAGTGGCGACATAGCCGACGCGCAGGAGATATACAGTCTAGCCTACG
CCATAATCATATGCCTAAGTGCTGCACCATTTAAGGTCACGGTTGGTAGC
CAGGGCTTGCAGCTACCGCTTGACAGTACAGTGGATGCGGGAGCCGTTAT
CGAGATGTTATTTGAACATGGGAAACCGTGCGAATATGCATCGATAATGC
CTAAGACAAGTGACATGAAGCAACGGAAAATGAAAAAGAATAAAAAGTGA
GGCATGCACTCAGCGCGTTCAGTCACGCAATAATTGGAGAATTGAGAGCA
CTTTAATCAA
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protein sequence of jgi.p|Nanoce1779_2|422887

>mRNA_4039-protein ID=mRNA_4039-protein|Name=jgi.p|Nanoce1779_2|422887|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MAAITATVTTEAGRRLRDMLQVLEKRAPYLRPNLIPKSCKPFMDLAAMCS
TEAQRQAVQRVLAQQRRKAYLSEVEADLYCVETILNMHSRGDNDELRLRL
EHFLSVNGHDSGDIADAQEIYSLAYAIIICLSAAPFKVTVGSQGLQLPLD
STVDAGAVIEMLFEHGKPCEYASIMPKTSDMKQRKMKKNKK*
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mRNA from alignment at scaffold_8:700982..702997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Nanoce1779_2|422887|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at scaffold_8:700982..702997- (Nannochloropsis oceanica)
CACACAAGTCAAGGCCATCTTAAAGTAGGCCTTCCTAATAACAGCAACCG
TAGCATCCGCAGGCACGCCGAGGATCTCGTAGAGTGTCTTCTTTGTGCCA
AAGGCTTGGTTGATCTGGGCTTGGGGGCTGGACATGGTGCTGAAGGGGGC
GGGAGGAGGAGCAAGACGAGGGAGGAAAGCAAGGTTGGACCAAGCGGATG
AGTCCTACGGCTGGAAATGTCGCTAAACTGTGCATGCATTGTGAAGCGGG
TTGGGAGTGATACTGGGGCATGGCAGCAATAAGTTCCTAGCTTGTGCAAA
GCATTCGCACAGAAAGCACAAGACAGCGATTCCTCATGCTATTGCTGGTA
CAATCACCTTGCTGATTGCTCATACTATCACAATCATCCCATACCCACAA
CACACACCACGACAGAGACCAGTAATGGCTGCAATCACTGCCACGGTGAC
GACAGAAGCCGGGCGGCGCTTGCGGGACATGCTGCAAGTGCTGGAAAAGG
TAAGAACACAACGATAAAGAGGGAGGTTTGAGGAGAAGAGGAATATCCCG
CGGGGTTGGGAGGTCTAGGGGATGTTTGGGAAGGTGGAGGACGGGCACAT
GTGTCAGAGCCTCACAAACCTCGCAATGGCTCAAGTGCATAAGACCTAAG
TAACCGGCTTACGGGGATGTTCTTCTCTGCACGGTACAGTATCGGCCTGT
TTCTGCATGCCTCATAAAAAGCCCTCCCCGACGGTAGACTCAATAGAGCA
AACAAGGCAAGATAGGGCTAAGGGTAGCCCACATGTTCGACCTCGCCATT
CTCACACGCTTTCCCACACCTCCATCATTAGCGGGCACCCTATTTGCGTC
CGAATCTGATCCCCAAAAGCTGCAAGCCTTTCATGGACTTGGCGGCCATG
TGCAGCACAGAGGCACAGCGGCAGGCTGTGCAGCGTGTGCTGGCGCAGCA
ACGACGGAAAGCGGTAGGTCCTGATTATATTGGATTTTAAGATATAAAGA
GGGGTATCTCATAAGTGCTATTCGATCGCCGGACTTACTTAGGGCGGAGC
GGCAGGTGAAGAGGGGGGGAAGGAGGAGGTAGAGGGGGGCCAACGGCTAG
CAATACAAGTGCACGTGAGCGTGGACAGTGGCGCCTGCAATATTTTCGCG
GTCAAGGTAATGATTGAGTCTTACATGAGAGGAGAAGTTCCGGTCTTTGC
GTTCCCTCTTGGAGCGTTTAATACACCATCCTTAACGACTCGCGATCCCC
CTCCAATTTCTCCGACAGTATTTGAGCGAGGTCGAGGCAGACCTCTACTG
TGTAGAAACGATTTTGAATATGCACAGCCGCGGCGACAATGACGAGGTAA
GCGATGGCTTTTGCCCAATGACGATGTTGCGCTCTTTTATCGCACTTTTC
GTTCCTCAAGTGAGAACACTTCTCGGGTCAAATGTTTTTTTTAATGCAAC
GGATCCTCGTTCCCAAAGCACCCTTTCCGTTCCATTCCTCAAGCACCTTT
TCCAGCTCTCCAGACTCATTGCGATCATAGTCAAATTCTCATGGCATAAA
TACTCTTTCTTATGACAGTTGCGCCTTCGCTTGGAGCACTTTCTGTCTGT
CAATGGCCACGACAGTGGCGACATAGCCGACGCGCAGGAGATATACAGTC
TAGCCTACGCCATAATCATATGCCTAAGGTGAGTTTTCTGGATGTAGTCT
TCTTCTTGTCAGACTCATTTCGATTATGCCGAAAGCAACCTGATGTGCAA
TTTCAATCACAACCTCTTTATGCAGTGCTGCACCATTTAAGGTCACGGTT
GGTAGCCAGGGCTTGCAGCTACCGCTTGACAGTACAGTGGATGCGGGAGC
CGTTATCGAGATGTTATTTGAACATGGGAAACCGTGCGAATATGCATCGA
TAATGCCTAAGACAAGTGACATGAAGCAACGGAAAATGAAAAAGAATAAA
AAGTGAGGCATGCACTCAGCGCGTTCAGTCACGCAATAATTGGAGAATTG
AGAGCACTTTAATCAA
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Coding sequence (CDS) from alignment at scaffold_8:700982..702997-

>mRNA_4039 ID=mRNA_4039|Name=jgi.p|Nanoce1779_2|422887|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_8:700982..702997- (Nannochloropsis oceanica)
TGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGCAGCTACCGC
TTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTATTTGAACAT
GGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAGTGACATGAA
GCAACGGAAAATGAAAAAGAATAAAAAGTGATTGCGCCTTCGCTTGGAGC
ACTTTCTGTCTGTCAATGGCCACGACAGTGGCGACATAGCCGACGCGCAG
GAGATATACAGTCTAGCCTACGCCATAATCATATGCCTAAGTATTTGAGC
GAGGTCGAGGCAGACCTCTACTGTGTAGAAACGATTTTGAATATGCACAG
CCGCGGCGACAATGACGAGCGGGCACCCTATTTGCGTCCGAATCTGATCC
CCAAAAGCTGCAAGCCTTTCATGGACTTGGCGGCCATGTGCAGCACAGAG
GCACAGCGGCAGGCTGTGCAGCGTGTGCTGGCGCAGCAACGACGGAAAGC
GATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGCTTGC
GGGACATGCTGCAAGTGCTGGAAAAGTGCTGCACCATTTAAGGTCACGGT
TGGTAGCCAGGGCTTGCAGCTACCGCTTGACAGTACAGTGGATGCGGGAG
CCGTTATCGAGATGTTATTTGAACATGGGAAACCGTGCGAATATGCATCG
ATAATGCCTAAGACAAGTGACATGAAGCAACGGAAAATGAAAAAGAATAA
AAAGTGATTGCGCCTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCACG
ACAGTGGCGACATAGCCGACGCGCAGGAGATATACAGTCTAGCCTACGCC
ATAATCATATGCCTAAGTATTTGAGCGAGGTCGAGGCAGACCTCTACTGT
GTAGAAACGATTTTGAATATGCACAGCCGCGGCGACAATGACGAGCGGGC
ACCCTATTTGCGTCCGAATCTGATCCCCAAAAGCTGCAAGCCTTTCATGG
ACTTGGCGGCCATGTGCAGCACAGAGGCACAGCGGCAGGCTGTGCAGCGT
GTGCTGGCGCAGCAACGACGGAAAGCGATGGCTGCAATCACTGCCACGGT
GACGACAGAAGCCGGGCGGCGCTTGCGGGACATGCTGCAAGTGCTGGAAA
AGTGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGCAGCTACC
GCTTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTATTTGAAC
ATGGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAGTGACATG
AAGCAACGGAAAATGAAAAAGAATAAAAAGTGATTGCGCCTTCGCTTGGA
GCACTTTCTGTCTGTCAATGGCCACGACAGTGGCGACATAGCCGACGCGC
AGGAGATATACAGTCTAGCCTACGCCATAATCATATGCCTAAGTATTTGA
GCGAGGTCGAGGCAGACCTCTACTGTGTAGAAACGATTTTGAATATGCAC
AGCCGCGGCGACAATGACGAGCGGGCACCCTATTTGCGTCCGAATCTGAT
CCCCAAAAGCTGCAAGCCTTTCATGGACTTGGCGGCCATGTGCAGCACAG
AGGCACAGCGGCAGGCTGTGCAGCGTGTGCTGGCGCAGCAACGACGGAAA
GCGATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGCTT
GCGGGACATGCTGCAAGTGCTGGAAAAGTGCTGCACCATTTAAGGTCACG
GTTGGTAGCCAGGGCTTGCAGCTACCGCTTGACAGTACAGTGGATGCGGG
AGCCGTTATCGAGATGTTATTTGAACATGGGAAACCGTGCGAATATGCAT
CGATAATGCCTAAGACAAGTGACATGAAGCAACGGAAAATGAAAAAGAAT
AAAAAGTGATTGCGCCTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCA
CGACAGTGGCGACATAGCCGACGCGCAGGAGATATACAGTCTAGCCTACG
CCATAATCATATGCCTAAGTATTTGAGCGAGGTCGAGGCAGACCTCTACT
GTGTAGAAACGATTTTGAATATGCACAGCCGCGGCGACAATGACGAGCGG
GCACCCTATTTGCGTCCGAATCTGATCCCCAAAAGCTGCAAGCCTTTCAT
GGACTTGGCGGCCATGTGCAGCACAGAGGCACAGCGGCAGGCTGTGCAGC
GTGTGCTGGCGCAGCAACGACGGAAAGCGATGGCTGCAATCACTGCCACG
GTGACGACAGAAGCCGGGCGGCGCTTGCGGGACATGCTGCAAGTGCTGGA
AAAGTGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGCAGCTA
CCGCTTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTATTTGA
ACATGGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAGTGACA
TGAAGCAACGGAAAATGAAAAAGAATAAAAAGTGATTGCGCCTTCGCTTG
GAGCACTTTCTGTCTGTCAATGGCCACGACAGTGGCGACATAGCCGACGC
GCAGGAGATATACAGTCTAGCCTACGCCATAATCATATGCCTAAGTATTT
GAGCGAGGTCGAGGCAGACCTCTACTGTGTAGAAACGATTTTGAATATGC
ACAGCCGCGGCGACAATGACGAGCGGGCACCCTATTTGCGTCCGAATCTG
ATCCCCAAAAGCTGCAAGCCTTTCATGGACTTGGCGGCCATGTGCAGCAC
AGAGGCACAGCGGCAGGCTGTGCAGCGTGTGCTGGCGCAGCAACGACGGA
AAGCGATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGC
TTGCGGGACATGCTGCAAGTGCTGGAAAAG
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Synonyms
Publications