jgi.p|Nanoce1779_2|586254, mRNA_4037 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586254
Unique NamemRNA_4037
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1542
Alignment locationscaffold_8:695055..696803 -

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Properties
Property NameValue
TranscriptId586340
TrackFilteredModels2
ProteinId586254
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:695055..696803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586254gene_4037Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586254mRNA_4037-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4037CDS_4037Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4037 ID=mRNA_4037|Name=jgi.p|Nanoce1779_2|586254|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA
ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC
GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC
GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT
CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC
TCTTACACCACGCCGATCCAGAACCAACATATCCCGGTGTACTGTGGTTC
GTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTTGCTATTG
CATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGTTGTTATC
AATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGGCAGCTTA
CGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGCCAGGCTT
ACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAGAAATTGT
GCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATGCGGTTGA
CAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACGGGGGACG
CGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTGCTATATC
GATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGTATGAAGG
CGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGGGAGACGA
CAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAGCTACTGG
GGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTGACGCCGG
TACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGATTATGGGG
TGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGACGGATGGA
AACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTTGTCGTCA
TTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATGGGAGAAG
CGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAGCGAATAG
CAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTTGTTGCAC
AGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCTACCAAGT
ATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAAACTGGTG
TCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTCCGTACTT
GCGTCGCCGGGAAAAGGGGTTTAACGGCCATACTTATTTGTCAGACACTA
TCCTCCTCCTTCTCTCCTCCTCCTCCTCTCATCATCCTCCTCTCCTCCTC
CTCCTCTCCTCCCCCTCCTTTTCCTTCTCCCCCTCCTCCTTCGCACCCTC
CTCCTCCTCTTCCTTTTTCTCCTCCTCCTCCTCCTCATCCTC
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protein sequence of jgi.p|Nanoce1779_2|586254

>mRNA_4037-protein ID=mRNA_4037-protein|Name=jgi.p|Nanoce1779_2|586254|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MMMKLLLLATTALVGADHIVYRSGELALRDPASYQNEVIRAARPHTYLSA
NDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIAS
KGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYE
AKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAA
IIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTD
GIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYGVG
REGGKTEGENNWTDGNLFSMVQ*
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mRNA from alignment at scaffold_8:695055..696803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4037 ID=mRNA_4037|Name=jgi.p|Nanoce1779_2|586254|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at scaffold_8:695055..696803- (Nannochloropsis oceanica)
CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA
ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC
GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC
GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT
CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC
TCTTACACCACGCCGATCCAGAACCAACATATCCCGGTACGCATAAAAGG
GATGACAGATGCATTGCATGTATGGCCTGGCGACAGAAGCGTGTGACGAC
TCTGTAAAGCCCCGACGCTAACGATGGTTGTCATCCGTCCAATTTACTTT
TCGCACCACATTCAAATATGTATAGAACCGCGTTTTTTCGATGTCGTTTT
AACTTTTCCACTTATTCCATTTCCTCCATTTTGCTTGACACAGGTGTACT
GTGGTTCGTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTT
GCTATTGCATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGT
TGTTATCAATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGG
CAGCTTACGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGC
CAGGCTTACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAG
AAATTGTGCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATG
CGGTTGACAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACG
GGGGACGCGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTG
CTATATCGATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGT
ATGAAGGCGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGG
GAGACGACAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAG
CTACTGGGGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTG
ACGCCGGTACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGAT
TATGGGGTGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGAC
GGATGGAAACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTT
GTCGTCATTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATG
GGAGAAGCGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAG
CGAATAGCAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTT
GTTGCACAGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCT
ACCAAGTATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAA
ACTGGTGTCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTC
CGTACTTGCGTCGCCGGGAAAAGGGGTTTAACGGCCATACTTATTTGTCA
GACACTATCCTCCTCCTTCTCTCCTCCTCCTCCTCTCATCATCCTCCTCT
CCTCCTCCTCCTCTCCTCCCCCTCCTTTTCCTTCTCCCCCTCCTCCTTCG
CACCCTCCTCCTCCTCTTCCTTTTTCTCCTCCTCCTCCTCCTCATCCTC
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Coding sequence (CDS) from alignment at scaffold_8:695055..696803-

>mRNA_4037 ID=mRNA_4037|Name=jgi.p|Nanoce1779_2|586254|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_8:695055..696803- (Nannochloropsis oceanica)
GTGTACTGTGGTTCGTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGA
TCGGCTTGCTATTGCATCCAAAGGACAGCTGCCAGACGTGATGCCCGCAC
CACAAGTTGTTATCAATTGTGGGACAGCCGGGGACTGTAACGGTGGAGAC
AGCGGGGCAGCTTACGCGTGGATACATGAAGTGGGAGGCATCCCTGATGT
GAGCTGCCAGGCTTACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATA
CCTGCAGAAATTGTGCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACA
TGTTATGCGGTTGACAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAA
TGTCACGGGGGACGCGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGG
TGGTCTGCTATATCGATGCGGGGCCACTTGAGGATTATACTGGGGGGGTT
AACATGTATGAAGGCGCCCACGGTACGAATCACGCGATTGCACTGGTGGG
GTGGGGGGAGACGACAGATGGTATCAAATTTTACATCGGGAGGAATAGCT
GGGGGAGCTACTGGGGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGA
GCTTTTGACGCCGGTACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAG
CATTGATTATGGGGTGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATA
ATTGGACGGATGGAAACTTGTTCTCCATGGTGCAGTAAATGATGATGAAG
TTGCTGCTCCTAGCCACCACAGCTCTAGTTGGCGCGGATCATATTGTGTA
CCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGCGTCGTACCAGAACGAAG
TAATTCGGGCGGCCCGACCTCATACTTACCTGTCGGCTAATGACCTGCCT
TCGGAGTGGGATTGGCGCTCAGTCGATGGGCTCTCTTACACCACGCCGAT
CCAGAACCAACATATCCCGGTGTACTGTGGTTCGTGCTGGTCTTTCAGCG
CCATGTCCTCGCTAGGGGATCGGCTTGCTATTGCATCCAAAGGACAGCTG
CCAGACGTGATGCCCGCACCACAAGTTGTTATCAATTGTGGGACAGCCGG
GGACTGTAACGGTGGAGACAGCGGGGCAGCTTACGCGTGGATACATGAAG
TGGGAGGCATCCCTGATGTGAGCTGCCAGGCTTACGAGGCGAAGAATCGG
CCATGCACGTTGGAAAATACCTGCAGAAATTGTGCACCCGAGTTTAGGAA
ATTGCGGAAGGGACGCACATGTTATGCGGTTGACAAGTACCCTAAAATTT
TCGTGGAGGAATATGGAAATGTCACGGGGGACGCGGCAATTATAGCAGAA
ATTTACGCGAGGGGGCCGGTGGTCTGCTATATCGATGCGGGGCCACTTGA
GGATTATACTGGGGGGGTTAACATGTATGAAGGCGCCCACGGTACGAATC
ACGCGATTGCACTGGTGGGGTGGGGGGAGACGACAGATGGTATCAAATTT
TACATCGGGAGGAATAGCTGGGGGAGCTACTGGGGTGAGAAGGGCTGGTT
TCGCATTGTACGAGGAGGAGCTTTTGACGCCGGTACGTGTTTCTGGGCAG
TACCGTCATCCGACTTCAGCATTGATTATGGGGTGGGCAGGGAAGGTGGA
AAAACAGAAGGAGAAAATAATTGGACGGATGGAAACTTGTTCTCCATGGT
GCAGTAAATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTG
GCGCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCT
GCGTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCT
GTCGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGC
TCTCTTACACCACGCCGATCCAGAACCAACATATCCCG
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Synonyms
Publications