jgi.p|Nanoce1779_2|586251, mRNA_4035 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586251
Unique NamemRNA_4035
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_8:689773..691406 +

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Properties
Property NameValue
TranscriptId586337
TrackFilteredModels2
ProteinId586251
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:689773..691406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586251gene_4035Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586251mRNA_4035-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4035CDS_4035Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4035 ID=mRNA_4035|Name=jgi.p|Nanoce1779_2|586251|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
AGGTGAGGATGGCAGAGCCTACAAGTAGTCGCATAGACGAGGAGGCGCTC
CGGAGCAAGCAGGTCATCACGGTGGTGCTTGACAAGGCGTCGTTGGAGAC
TGTCAAGATGAAAAGCGGACAATACTGCCTTCTCAGCTGCGACGACCACC
AGGCCATGATGAAGAAGGGTGGCAAGAATCCTGCAGACTATAGACCTGAC
ATCTTACACCAAGAGTTGCTGGCCTTACTGGACAGTCCTTTGAACAAGGT
GGGAAAGCTCAAGGTGTACATCCACTCGGCATCCAACGTCCTCATCGAGG
TCAACCCCAAATGCCGCATCCCCCGGACCTATAAGCGCTTTGCGGGGCTC
ATGGTCCAACTGCTACACAAACTCAAGGTGCGCTCGGCGGACGGCAAAGC
CACCCTTCTGAAGGTAATCAAGAACCCCATAACCCGGCACTTGCCTGCTG
GCTGCAAATGCTATGGCTTCTCCGTGCAGGGCACGCTTTACAATCCTAGC
TCTCTCGCCTGTGCACTGCCCGAAGATAAACCCATCGTTTTTGTCCTGGG
GGCCATGGCGGCGGGGCACATCACTGTGAATGACCATCCTTACGTCGAGG
AAATGGTTTCCGTCTCGGACTTCCCGCTCAGCGGCGCCACAGCCATCAAC
CGCCTCTTGGGCGCTATCGAGGACTATTGGGGCATTTTGTAGAGAGGGCT
AGTCGGGCACGGTACGCAGTACATACATACATATACACATGCATTTGGGT
GCGTAAGTGATGAAAGCAGGGTGAAAAGAAGACTTTCATTTCCTGAAAGA
AATCAACAAGAGCATACTCGAT
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protein sequence of jgi.p|Nanoce1779_2|586251

>mRNA_4035-protein ID=mRNA_4035-protein|Name=jgi.p|Nanoce1779_2|586251|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MAEPTSSRIDEEALRSKQVITVVLDKASLETVKMKSGQYCLLSCDDHQAM
MKKGGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIHSASNVLIEVNP
KCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPITRHLPAGCK
CYGFSVQGTLYNPSSLACALPEDKPIVFVLGAMAAGHITVNDHPYVEEMV
SVSDFPLSGATAINRLLGAIEDYWGIL*
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mRNA from alignment at scaffold_8:689773..691406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4035 ID=mRNA_4035|Name=jgi.p|Nanoce1779_2|586251|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp|location=Sequence derived from alignment at scaffold_8:689773..691406+ (Nannochloropsis oceanica)
AGGTGAGGATGGCAGAGCCTACAAGTAGTCGCATAGACGAGGAGGCGCTC
CGGAGCAAGCAGGTCATCACGGTGGTGCTTGACAAGGCGTCGTTGGAGAC
TGTCAAGATGAAAAGCGGACAATACTGCCTTCTCAGCTGCGACGACCACC
AGGCCATGATGAAGAAGGGTGGCAAGAATCCTGCAGACTATAGACCTGAC
ATCTTACACCAAGAGTTGCTGGCCTTACTGGACAGTCCTTTGAACAAGGT
GGGAAAGCTCAAGGTGTACATCCACTCGGCATCCAACGTCCTCATCGAGG
TCAACCCCAAATGCCGCATCCCCCGGACCTATAAGCGCTTTGCGGGGCTC
ATGGGTAGGTGAAAGAGGTATACCGGGGAGTAAACGAAGGAAGTTTGATG
GGGAAAACTGCTGGTTGATCAGATGTTGCACGATGACCACGATGACTTTT
GGCATGGAAGGGAGGCGACTATGAGCATGTAGGGTCAACATGGAATGGTA
AAGAATAGAAAGGCACACTTGGATAAGTACAACCCAAACACTCATAAAAA
ATATTTTCGCACACTCACGATGCCTCACTCAACCCTACTATCATCAAACT
CTTCTCACTCGTTTGCCTTCACCCACTTTTTTCCACCTTCCCACGCCTCA
ACAGTCCAACTGCTACACAAACTCAAGGTGCGCTCGGCGGACGGCAAAGC
CACCCTTCTGAAGGTAATCAAGAACCCCATAACCCGGCACTTGCCTGCTG
GCTGCAAATGCTATGGCTTCTCCGTGCAGGGCACGCTTTACAATCCTAGC
TCTCTCGCCTGTGCACTGCCCGAAGATAAACCCATCGTTTTTGTCCTGGG
GGCCATGGCGGCGGGGCACATCACTGTGAATGACCATCCTTACGTACGTG
GGAGGGAGGCTGAAGGGAATTTTGAGGGAAAGGAAAGGGGGGAAATGAAG
GGAGAATGAGTCAATTCGAAGGCCAACAAGACCCCTTGACTATCTCAACC
TTTTTTGTGGCGGTCTTCATTTATTTTCTAGGAGACCGGAAGCAGGTTTT
TCTCTCGTCTCAGCTGGTTGTGTACAGACAGGAGAGCCGCGCTTTTTGGG
ATGATGTTCTTCTCCTTTTTTGCTAGTTCACTTTCTGTACTTACGTTCCA
CTGTCTCCTTTCCACGCCGTTTTGCCCACACAACAATACAGGTCGAGGAA
ATGGTTTCCGTCTCGGACTTCCCGGTAAGTGTGTAGTGACTCATCAAACA
TCCGCATGCTTCAATGCCGGCTTCATCTTTCCTGCCCACCGTGTCGCTCT
GTGTTATTCACTCTCCAAAGCAGACGTGTTTGTGTCCCACTGGCTGTCTA
CATCTCGTCTGGGAGGAGCACGTACATTATCATGGATTGTTGACCCTGAT
GAATGTCATCTTGATTTATCGTACTCATGCACACACAGCTCAGCGGCGCC
ACAGCCATCAACCGCCTCTTGGGCGCTATCGAGGACTATTGGGGCATTTT
GTAGAGAGGGCTAGTCGGGCACGGTACGCAGTACATACATACATATACAC
ATGCATTTGGGTGCGTAAGTGATGAAAGCAGGGTGAAAAGAAGACTTTCA
TTTCCTGAAAGAAATCAACAAGAGCATACTCGAT
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Coding sequence (CDS) from alignment at scaffold_8:689773..691406+

>mRNA_4035 ID=mRNA_4035|Name=jgi.p|Nanoce1779_2|586251|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_8:689773..691406+ (Nannochloropsis oceanica)
ATGGCAGAGCCTACAAGTAGTCGCATAGACGAGGAGGCGCTCCGGAGCAA
GCAGGTCATCACGGTGGTGCTTGACAAGGCGTCGTTGGAGACTGTCAAGA
TGAAAAGCGGACAATACTGCCTTCTCAGCTGCGACGACCACCAGGCCATG
ATGAAGAAGGGTGGCAAGAATCCTGCAGACTATAGACCTGACATCTTACA
CCAAGAGTTGCTGGCCTTACTGGACAGTCCTTTGAACAAGGTGGGAAAGC
TCAAGGTGTACATCCACTCGGCATCCAACGTCCTCATCGAGGTCAACCCC
AAATGCCGCATCCCCCGGACCTATAAGCGCTTTGCGGGGCTCATGGTCCA
ACTGCTACACAAACTCAAGGTGCGCTCGGCGGACGGCAAAGCCACCCTTC
TGAAGGTAATCAAGAACCCCATAACCCGGCACTTGCCTGCTGGCTGCAAA
TGCTATGGCTTCTCCGTGCAGGGCACGCTTTACAATCCTAGCTCTCTCGC
CTGTGCACTGCCCGAAGATAAACCCATCGTTTTTGTCCTGGGGGCCATGG
CGGCGGGGCACATCACTGTGAATGACCATCCTTACGTCGAGGAAATGGTT
TCCGTCTCGGACTTCCCGCTCAGCGGCGCCACAGCCATCAACCGCCTCTT
GGGCGCTATCGAGGACTATTGGGGCATTTTGTAGATGGCAGAGCCTACAA
GTAGTCGCATAGACGAGGAGGCGCTCCGGAGCAAGCAGGTCATCACGGTG
GTGCTTGACAAGGCGTCGTTGGAGACTGTCAAGATGAAAAGCGGACAATA
CTGCCTTCTCAGCTGCGACGACCACCAGGCCATGATGAAGAAGGGTGGCA
AGAATCCTGCAGACTATAGACCTGACATCTTACACCAAGAGTTGCTGGCC
TTACTGGACAGTCCTTTGAACAAGGTGGGAAAGCTCAAGGTGTACATCCA
CTCGGCATCCAACGTCCTCATCGAGGTCAACCCCAAATGCCGCATCCCCC
GGACCTATAAGCGCTTTGCGGGGCTCATGGTCCAACTGCTACACAAACTC
AAGGTGCGCTCGGCGGACGGCAAAGCCACCCTTCTGAAGGTAATCAAGAA
CCCCATAACCCGGCACTTGCCTGCTGGCTGCAAATGCTATGGCTTCTCCG
TGCAGGGCACGCTTTACAATCCTAGCTCTCTCGCCTGTGCACTGCCCGAA
GATAAACCCATCGTTTTTGTCCTGGGGGCCATGGCGGCGGGGCACATCAC
TGTGAATGACCATCCTTACGTCGAGGAAATGGTTTCCGTCTCGGACTTCC
CGCTCAGCGGCGCCACAGCCATCAACCGCCTCTTGGGCGCTATCGAGGAC
TATTGGGGCATTTTGTAGATGGCAGAGCCTACAAGTAGTCGCATAGACGA
GGAGGCGCTCCGGAGCAAGCAGGTCATCACGGTGGTGCTTGACAAGGCGT
CGTTGGAGACTGTCAAGATGAAAAGCGGACAATACTGCCTTCTCAGCTGC
GACGACCACCAGGCCATGATGAAGAAGGGTGGCAAGAATCCTGCAGACTA
TAGACCTGACATCTTACACCAAGAGTTGCTGGCCTTACTGGACAGTCCTT
TGAACAAGGTGGGAAAGCTCAAGGTGTACATCCACTCGGCATCCAACGTC
CTCATCGAGGTCAACCCCAAATGCCGCATCCCCCGGACCTATAAGCGCTT
TGCGGGGCTCATGGTCCAACTGCTACACAAACTCAAGGTGCGCTCGGCGG
ACGGCAAAGCCACCCTTCTGAAGGTAATCAAGAACCCCATAACCCGGCAC
TTGCCTGCTGGCTGCAAATGCTATGGCTTCTCCGTGCAGGGCACGCTTTA
CAATCCTAGCTCTCTCGCCTGTGCACTGCCCGAAGATAAACCCATCGTTT
TTGTCCTGGGGGCCATGGCGGCGGGGCACATCACTGTGAATGACCATCCT
TACGTCGAGGAAATGGTTTCCGTCTCGGACTTCCCGCTCAGCGGCGCCAC
AGCCATCAACCGCCTCTTGGGCGCTATCGAGGACTATTGGGGCATTTTGT
AGATGGCAGAGCCTACAAGTAGTCGCATAGACGAGGAGGCGCTCCGGAGC
AAGCAGGTCATCACGGTGGTGCTTGACAAGGCGTCGTTGGAGACTGTCAA
GATGAAAAGCGGACAATACTGCCTTCTCAGCTGCGACGACCACCAGGCCA
TGATGAAGAAGGGTGGCAAGAATCCTGCAGACTATAGACCTGACATCTTA
CACCAAGAGTTGCTGGCCTTACTGGACAGTCCTTTGAACAAGGTGGGAAA
GCTCAAGGTGTACATCCACTCGGCATCCAACGTCCTCATCGAGGTCAACC
CCAAATGCCGCATCCCCCGGACCTATAAGCGCTTTGCGGGGCTCATGGTC
CAACTGCTACACAAACTCAAGGTGCGCTCGGCGGACGGCAAAGCCACCCT
TCTGAAGGTAATCAAGAACCCCATAACCCGGCACTTGCCTGCTGGCTGCA
AATGCTATGGCTTCTCCGTGCAGGGCACGCTTTACAATCCTAGCTCTCTC
GCCTGTGCACTGCCCGAAGATAAACCCATCGTTTTTGTCCTGGGGGCCAT
GGCGGCGGGGCACATCACTGTGAATGACCATCCTTACGTCGAGGAAATGG
TTTCCGTCTCGGACTTCCCGCTCAGCGGCGCCACAGCCATCAACCGCCTC
TTGGGCGCTATCGAGGACTATTGGGGCATTTTGTAG
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Synonyms
Publications