jgi.p|Nanoce1779_2|422797, mRNA_4032 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|422797
Unique Name	mRNA_4032
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2045
Alignment location	scaffold_8:677405..679873 -

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Properties


Property Name	Value
TranscriptId	422883
Track	FilteredModels2
ProteinId	422797

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:677405..679873 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|422797	gene_4032	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|422797	mRNA_4032-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4032	CDS_4032	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:677405..679873-
coding sequence from alignment at scaffold_8:677405..679873-

mRNA sequence

>mRNA_4032 ID=mRNA_4032|Name=jgi.p|Nanoce1779_2|422797|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp
GTCAGGGCCTCGAGCGGTGCGTAAACAAGGTATGCGCGGAAGGAGAACGG
GCAGCTATCAGCACAAGTAGCATGGGCCCCTAAAGTTTTACTGGAGCGAC
AAAAATAAAGATAATCACATGATCCTCTCCCTCGCACGCGTAGTGATCAG
TACAGCAGTGCGCTCCCCACAAATAACTGGGATGGGACTTTCTTCTGCCC
TCAGGCTCTAAAGTGCATTACCGCGGCATCACGACAGTGGCAAGATCAGG
GCTGCCTTCGGATCTAGGAGAGGTCTACCCTAGTTTGTGTTTGTTTTCAC
ACGCTGCCACGAACAGAATGCAGAAACCGCTGTGCATGTTGCTGTGTCTG
GTGTTGCGGCCAGCCGTGTCAGTGGCGTTTGTGCCCGCCTCAATACCAGC
CTCATCCCTCGCTTCGGTTGCAGCCGTCGACCGGCTAACTACGTCGACGT
CCACATTGGTGCAAAGTTCAACGCTTTTCCAGTCCAAAAGGAGAAGACTA
TTCGCTGCCAGTACATTGCCACAAGATCGCCAACAGCGGCGGGGTCGGCA
GGCGGAGGACTGGGAGCAGGGGAAGGACGAGCAAGGGATTCAGGAGACGG
AGAAACGCGAACGAAAGCCGATCTTGTCTACATTGGTAGGAATGCTGGCT
TCCAAGCTGCTCCGTAAGACAGCACGACGGGTGTCAGGCCTGGATATTGA
TGTGGGCGCCCGCTCCAACTCGGATGTGCTGGCAGGGAATTTGCCGCTTG
TCAAGGCCAAGTTCAACCTCATCGTCCTCGAGAACCTACAAATTAGTGGC
GGAGGCCGCATTGAGATTACCGGTCTCAATATCCGGCTATTGGCCCTGCT
TCTCGCCCGGCGCCTGTCATTGATCCGCCGCCCCTTCGAAGTGTGGGGGC
AGTACGTCCTGACGCAGCAAGACGTCTCCGCCTCCAAGCTCATCCGCGAC
ATGGTCCAACTCCTCGTCAACAACGTCCTACGCACCCTCTTTCCCTCCCT
GCACCTTACCTTCTTCGATGTGTCTATCGACTCGGTGCAGATATCCCCTT
TGCGAAAGCTGGCCGTGTATGGCACCGCCAACATCGCCGAGTCGGACGCC
GGCATGCCCTTCACCCTTCTGACCGGGGTGGGCCTGGCGGGCGACGGCCA
CATCGTCTACCTGGACAAACCCGAGCTGGTATTGAATCCTCAGACGACTT
TGCCAGTTAAGGTTCCGCTGGGATCCATCCGGGCCTTTGACGTGGACATT
GGCGACAACGCGCGGATTGAGAGCCTGGAGATTGATGATATTCGTGGGGT
CTCAGTCACGGCTCGCACACTTATTACGCCTGCCCCACCCTTTCAAGTCA
CAGACATGGGAAAGCGAGCTGCATTCATGTACGATATGGGCGCTTTCTTT
AGCAGTTTCTTTGGGTTTACCCATTTTTCTGATTTGGACTTGAATGGAGA
AAGCAAGAGATGAGGAGAGGGGGTTTGACGGAAGAGGGGACGGAAAAGTA
GAATTGTGGTGATAGGCCATTGAAAGGTAGAAGAAACAGAGAAATTTTAT
TCAGGAGTTAAGTAGTACATGTCAGACAACGGGATTTTGAACAATCGAAT
GAGGAAATCGGGTGTGTGTAAGACGTAAAAATTAATTGAAATAATCAATA
TCCTGAGTCAGCGGACGTCCGCACACGTACAAACCCGAACATGGCATAGT
ATGTGTTATGAAGGGGTGAATGTGTGATTATAATAGACAGCAACAACAGT
GTAGAGACTTAATAGAGCTTGATTGACTGATAAAGCAAATGGAGAGAAGA
GACGGAGGAGATTACCTCCTCCATCGCGCATGGGAATGCGCCAGTACCTG
GGCCGTCGTGGTAAAATAAAAAAACATCGGTGGACCGATCGAACGAGTCA
TCACTCCTGTAAGATAAGCATACAAATCAATAACCAACAATCCTTGTACA
GAAGACGAACCAATGAAGGGGAAGTGTAGCGTCGCGTTATGGCGTTGCTC
GTGTGAACAAAATTTGAATGGTGCGTTTATTTTCCAACGGTTGGC

protein sequence of jgi.p|Nanoce1779_2|422797

>mRNA_4032-protein ID=mRNA_4032-protein|Name=jgi.p|Nanoce1779_2|422797|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQKPLCMLLCLVLRPAVSVAFVPASIPASSLASVAAVDRLTTSTSTLVQS
STLFQSKRRRLFAASTLPQDRQQRRGRQAEDWEQGKDEQGIQETEKRERK
PILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFN
LIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQ
QDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLRKLAV
YGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVP
LGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVTDMGKR
AAFMYDMGAFFSSFFGFTHFSDLDLNGESKR*

mRNA from alignment at scaffold_8:677405..679873-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4032 ID=mRNA_4032|Name=jgi.p|Nanoce1779_2|422797|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp|location=Sequence derived from alignment at scaffold_8:677405..679873- (Nannochloropsis oceanica)
GTCAGGGCCTCGAGCGGTGCGTAAACAAGGTATGCGCGGAAGGAGAACGG
GCAGCTATCAGCACAAGTAGCATGGGCCCCTAAAGTTTTACTGGAGCGAC
AAAAATAAAGATAATCACATGATCCTCTCCCTCGCACGCGTAGTGATCAG
TACAGCAGTGCGCTCCCCACAAATAACTGGGATGGGACTTTCTTCTGCCC
TCAGGCTCTAAAGTGCATTACCGTAAGAAGCAACACGGCGGGTCCACATG
AATCCACAGAGCCACACCCTTCCTCTGGCCATCTCGATCGCTGTCGCATT
TGCTGCCTCCATCTTTCACTCCTCACCCAACACGCACCCCCTTCATCACC
CAAGACAGGCGGCATCACGACAGTGGCAAGATCAGGGCTGCCTTCGGATC
TAGGAGAGGTCTACCCTAGTTTGTGTTTGTTTTCACACGCTGCCACGTAA
GGATAGCTGATAATCAACGTTTGTTCTTCGAGCGGGCGTAGAAAAGCTCT
CTTACGCTAGACGACAAACTTACCCATTGGCAAGGAACAGAATGCAGAAA
CCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGGCCAGCCGTGTCAGTGGC
GTTTGTGCCCGCCTCAATACCAGCCTCATCCCTCGCTTCGGTTGCAGCCG
TCGACCGGCTAACTACGTCGACGTCCACATTGGTGCAAAGTTCAACGCTT
TTCCAGTCCAAAAGGAGAAGACTATTCGCTGCCAGTACATTGCCACAAGA
TCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGACTGGGAGCAGGGGAAGG
ACGAGCAAGGGATTCAGGAGACGGAGAAACGCGAACGAAAGCCGATCTTG
TCTACATTGGTAGGAATGCTGGCTTCCAAGCTGCTCCGTAAGACAGCACG
ACGGGTGTCAGGCCTGGATATTGATGTGGGCGCCCGCTCCAACTCGGATG
TGCTGGCAGGGAATTTGCCGCTTGTCAAGGTACGAAAGATTTGTGTATGG
ATTGGTACGGGTGACTGATGATGGCGATATAAGGGATATGAAGGGATAAT
GGTGTAATTCTCGCGTTTTGATAACAAATATAAAATAAATGAAGACACGT
GCTTCATTTTTCTTTTTGTCAATCCATATTTCCTCTTGGCCAAATTTCAT
CTCTTCCTTTCCTTTCTCCTTCCTCTCAGGCCAAGTTCAACCTCATCGTC
CTCGAGAACCTACAAATTAGTGGCGGAGGCCGCATTGAGATTACCGGTCT
CAATATCCGGCTATTGGCCCTGCTTCTCGCCCGGCGCCTGTCATTGATCC
GCCGCCCCTTCGAAGTGTGGGGGCAGTACGTCCTGACGCAGCAAGACGTC
TCCGCCTCCAAGCTCATCCGCGACATGGTCCAACTCCTCGTCAACAACGT
CCTACGCACCCTCTTTCCCTCCCTGCACCTTACCTTCTTCGATGTGTCTA
TCGACTCGGTGCAGATATCCCCTTTGCGAAAGCTGGCCGTGTATGGCACC
GCCAACATCGCCGAGTCGGACGCCGGCATGCCCTTCACCCTTCTGACCGG
GGTGGGCCTGGCGGGCGACGGCCACATCGTCTACCTGGACAAACCCGAGC
TGGTATTGAATCCTCAGACGACTTTGCCAGTTAAGGTTCCGCTGGGATCC
ATCCGGGCCTTTGACGTGGACATTGGCGACAACGCGCGGATTGAGAGCCT
GGAGATTGATGATATTCGTGGGGTCTCAGTCACGGCTCGCACACTTATTA
CGCCTGCCCCACCCTTTCAAGTCACAGACATGGGAAAGCGAGCTGCATTC
ATGTACGATATGGGCGCTTTCTTTAGCAGTTTCTTTGGGTTTACCCATTT
TTCTGATTTGGACTTGAATGGAGAAAGCAAGAGATGAGGAGAGGGGGTTT
GACGGAAGAGGGGACGGAAAAGTAGAATTGTGGTGATAGGCCATTGAAAG
GTAGAAGAAACAGAGAAATTTTATTCAGGAGTTAAGTAGTACATGTCAGA
CAACGGGATTTTGAACAATCGAATGAGGAAATCGGGTGTGTGTAAGACGT
AAAAATTAATTGAAATAATCAATATCCTGAGTCAGCGGACGTCCGCACAC
GTACAAACCCGAACATGGCATAGTATGTGTTATGAAGGGGTGAATGTGTG
ATTATAATAGACAGCAACAACAGTGTAGAGACTTAATAGAGCTTGATTGA
CTGATAAAGCAAATGGAGAGAAGAGACGGAGGAGATTACCTCCTCCATCG
CGCATGGGAATGCGCCAGTACCTGGGCCGTCGTGGTAAAATAAAAAAACA
TCGGTGGACCGATCGAACGAGTCATCACTCCTGTAAGATAAGCATACAAA
TCAATAACCAACAATCCTTGTACAGAAGACGAACCAATGAAGGGGAAGTG
TAGCGTCGCGTTATGGCGTTGCTCGTGTGAACAAAATTTGAATGGTGCGT
TTATTTTCCAACGGTTGGC

Coding sequence (CDS) from alignment at scaffold_8:677405..679873-

>mRNA_4032 ID=mRNA_4032|Name=jgi.p|Nanoce1779_2|422797|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_8:677405..679873- (Nannochloropsis oceanica)
GCCAAGTTCAACCTCATCGTCCTCGAGAACCTACAAATTAGTGGCGGAGG
CCGCATTGAGATTACCGGTCTCAATATCCGGCTATTGGCCCTGCTTCTCG
CCCGGCGCCTGTCATTGATCCGCCGCCCCTTCGAAGTGTGGGGGCAGTAC
GTCCTGACGCAGCAAGACGTCTCCGCCTCCAAGCTCATCCGCGACATGGT
CCAACTCCTCGTCAACAACGTCCTACGCACCCTCTTTCCCTCCCTGCACC
TTACCTTCTTCGATGTGTCTATCGACTCGGTGCAGATATCCCCTTTGCGA
AAGCTGGCCGTGTATGGCACCGCCAACATCGCCGAGTCGGACGCCGGCAT
GCCCTTCACCCTTCTGACCGGGGTGGGCCTGGCGGGCGACGGCCACATCG
TCTACCTGGACAAACCCGAGCTGGTATTGAATCCTCAGACGACTTTGCCA
GTTAAGGTTCCGCTGGGATCCATCCGGGCCTTTGACGTGGACATTGGCGA
CAACGCGCGGATTGAGAGCCTGGAGATTGATGATATTCGTGGGGTCTCAG
TCACGGCTCGCACACTTATTACGCCTGCCCCACCCTTTCAAGTCACAGAC
ATGGGAAAGCGAGCTGCATTCATGTACGATATGGGCGCTTTCTTTAGCAG
TTTCTTTGGGTTTACCCATTTTTCTGATTTGGACTTGAATGGAGAAAGCA
AGAGATGAATGCAGAAACCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGG
CCAGCCGTGTCAGTGGCGTTTGTGCCCGCCTCAATACCAGCCTCATCCCT
CGCTTCGGTTGCAGCCGTCGACCGGCTAACTACGTCGACGTCCACATTGG
TGCAAAGTTCAACGCTTTTCCAGTCCAAAAGGAGAAGACTATTCGCTGCC
AGTACATTGCCACAAGATCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGA
CTGGGAGCAGGGGAAGGACGAGCAAGGGATTCAGGAGACGGAGAAACGCG
AACGAAAGCCGATCTTGTCTACATTGGTAGGAATGCTGGCTTCCAAGCTG
CTCCGTAAGACAGCACGACGGGTGTCAGGCCTGGATATTGATGTGGGCGC
CCGCTCCAACTCGGATGTGCTGGCAGGGAATTTGCCGCTTGTCAAGGCCA
AGTTCAACCTCATCGTCCTCGAGAACCTACAAATTAGTGGCGGAGGCCGC
ATTGAGATTACCGGTCTCAATATCCGGCTATTGGCCCTGCTTCTCGCCCG
GCGCCTGTCATTGATCCGCCGCCCCTTCGAAGTGTGGGGGCAGTACGTCC
TGACGCAGCAAGACGTCTCCGCCTCCAAGCTCATCCGCGACATGGTCCAA
CTCCTCGTCAACAACGTCCTACGCACCCTCTTTCCCTCCCTGCACCTTAC
CTTCTTCGATGTGTCTATCGACTCGGTGCAGATATCCCCTTTGCGAAAGC
TGGCCGTGTATGGCACCGCCAACATCGCCGAGTCGGACGCCGGCATGCCC
TTCACCCTTCTGACCGGGGTGGGCCTGGCGGGCGACGGCCACATCGTCTA
CCTGGACAAACCCGAGCTGGTATTGAATCCTCAGACGACTTTGCCAGTTA
AGGTTCCGCTGGGATCCATCCGGGCCTTTGACGTGGACATTGGCGACAAC
GCGCGGATTGAGAGCCTGGAGATTGATGATATTCGTGGGGTCTCAGTCAC
GGCTCGCACACTTATTACGCCTGCCCCACCCTTTCAAGTCACAGACATGG
GAAAGCGAGCTGCATTCATGTACGATATGGGCGCTTTCTTTAGCAGTTTC
TTTGGGTTTACCCATTTTTCTGATTTGGACTTGAATGGAGAAAGCAAGAG
ATGAATGCAGAAACCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGGCCAG
CCGTGTCAGTGGCGTTTGTGCCCGCCTCAATACCAGCCTCATCCCTCGCT
TCGGTTGCAGCCGTCGACCGGCTAACTACGTCGACGTCCACATTGGTGCA
AAGTTCAACGCTTTTCCAGTCCAAAAGGAGAAGACTATTCGCTGCCAGTA
CATTGCCACAAGATCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGACTGG
GAGCAGGGGAAGGACGAGCAAGGGATTCAGGAGACGGAGAAACGCGAACG
AAAGCCGATCTTGTCTACATTGGTAGGAATGCTGGCTTCCAAGCTGCTCC
GTAAGACAGCACGACGGGTGTCAGGCCTGGATATTGATGTGGGCGCCCGC
TCCAACTCGGATGTGCTGGCAGGGAATTTGCCGCTTGTCAAG

Synonyms

Publications