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Properties
| Property Name | Value |
|---|
| TranscriptId | 586298 |
| Track | FilteredModels2 |
| ProteinId | 586212 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:670129..672795 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4030 ID=mRNA_4030|Name=jgi.p|Nanoce1779_2|586212|organism=Nannochloropsis oceanica|type=mRNA|length=2548bp
TTTTGAGCTCCGCGAACTACACCGGCATCAAAAACGTCATCGACAAGATT
CTCCTCGCCAAGGCGAATCAGCAGCAGAATGAGAGGAAGCAGAGGAACCA
TGGCAGTGAAGGACATAGGACATTCCAAGGACGAGCCGCTGTGGCGGCAG
TACCTCTAAGGATCCGAGGCGACAGCTTCATGGTCACGCTCCTCGAGCCC
GAGAGATACCCGCGGTCTACCTTTGCCCAGATGTACATCTTGAGTCACCG
GCAGTTTCGCAAGGCCTGGAAAATGAAACGCGACGTGTTCTACAGCATGC
TCCGCAACATTTTAGTGGCCGTCTTTCACGGGAGCCTCTACACGAACTTG
TCGCCGGGCGCCATCCAGTCGCGGCTATCTCTCCTTTTCTTCGCCATTAT
GTTCGTTATGATGGCCAACCAGTCCTTCATTCCCAAGTACGTCTCTCTTT
TAAACCACATAGTCAATCCTTCGGCCCCAAACTTACTTGTCTTCACCGTC
AACTCACTAACAGTGTTACTGATGACCGCCTGCTCTTTTACCGCGAACGA
GGAGCGGGCGTGTACGGCACTGTGCCCTACTGGTTCAGCTCCTCCTTGGC
CTATATTCCCCAGTGTGCCCTCGCTAGCATCACCTACTGCACCGTCGTCT
ACAAGATGTCCGGGCTGAACGCCGCTGCAGGTACGTAAGGAGCGAACAAA
GGAGATGAGCCCCTCCTAAATAATTGTACGCGTATTCACTTTCTCGACAA
AACAGGCGCCTTTGGTTACTTTTGCCTGGTCGTGACCATGTGCGGGCTCT
GCGGCATGTACTTCTGCCAACTGGTCTCGTTGGCGTCCCCCAACTCCCAA
ATCGCTGTCTCCGTCTTCCCCGCGGCGCTATTTTTGGTTGTAGCTTTTGC
GGGCTTCGTTGTCCGGTTGCCTTCCTTGCCTGACTGGTTGGGTTCGTGGG
CACCGATCATTAGTTTCGCCCGGTGGGGGTTTCAGGGGTTGGTCATCAAC
GAGTTTAAGGGCAACGAGAAGATCGACTATTACGAGATCATTCAGATGCA
GATTCCCGAACCCTATCAAGCCTTTATCGAAAACTTTGGGTTTGAAGGCT
ATTCGAAGTACGACTCACTGCCTATTCTTGCCATATGTCTGGCCATTTTG
TGGCTAGCCACCATAATTCCCATCAAATTCGTGTCGTTTGAGAAGCGATG
ATGTGTGTATAATGATTATGTAGGAACTTCATCTTCCGATGATGTATAAC
ATGGATGTGTACGTGTTTAATTTATCAAACCTAAGCTCTAGGCACAATAT
AAGAGGATGAAAGGAAAAAGTAGCACACTTAACCTGTAAAGCGGTGCTTA
TCTCCTTCTTATCCAGCGAATAACATCTATCAATCGACACTCCAGCTGCC
CTTGTTTTCTGTGATCATGTGCATGGATGTCACCCTGGCACCCGAAGTCA
GACTTGCTAAATAATACCATTATCCAGTGCTTACCAATCGATATGGACCA
TTCCTGCACGCCGTTACTACATTTAGGCTTTTACGAAAGGTTAAAGTCTC
CCTGATTAAACTTCTATTAACTTTGGGGACCCGAAAAGGTGATCATTCCG
CCTTGCCGAATTACCTAACGTTTCGAACGATAGAACAAGTTAGGTGAAAA
TGCCGTTCGTATCAGGATCCGCGGCCAATGTCACATGAAAAACAGAATCT
TTGTTGTGTTTGGTCTTGTTTTGTCTTTGCTTTTCTCGAATGCACACTTC
TGAAGGTCTTTTTATAGCTCGTGCCGAAGCAGGCCGACACCGTACCTTGC
AGAGCAACCCATTTTCATTTTTGGTAACTGGTGCTTGACAACCAGATAAA
ACCAGTGATACCTACCACTGGGAAACTACCAATTGGCATTGTAAGTAATG
TATCAAGTATCTGGTTACGATGTGGATGATTTTGAATGACGCGGGGGGAC
AGAGAGCCAGGGGGGGGGGCTAGTATCCGAGAGCACCCCTATTAAGCTCA
TTCGAACGACCACAAATTTTTTCGGTCATGGTCAAGCCTCGCCGGTTCGA
AGAAAGAGTAGAGACACGAGAGCACCCCTATTAAGCTCATTCGAACGACC
ACAAATTTTTTCGGTCATGGTCAAGCCTCGCCGGTTCGAAGAATGAGTAG
AGACACAAGTGGAATTTGTGCGTGAAGCAGAGGGGTAATGGGAAGCCCCC
GATTGCCCTTTTTCTTTATTTTGGCTTGAAATGATAGATACCAATCGGTA
CTTTGACCCTAGGGGTAGCCTACTTGGTGTTCTTTCCCAACCTACTTGGT
ACTCTCGGCGTCATACTTGGTAAGTATACCAATTGGCAAATTGGCGTCGA
GCTACAAGTACTACCAAGTACCCGTGAAGAGATACCATATACGGTCCTGG
GAGCAGAGCGCTCACTTTGATTTGATCGATTGATTTCTTGATTATTTTGT
GAGATCGATATTGACCTTGGTTAAGCCTATTAATTTATCGAAATCTCTTG
TGGGTCATCAATAACCATTTACGAGTCAGGTGGTGGAGTGGAGACTGT back to topprotein sequence of jgi.p|Nanoce1779_2|586212 >mRNA_4030-protein ID=mRNA_4030-protein|Name=jgi.p|Nanoce1779_2|586212|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MVTLLEPERYPRSTFAQMYILSHRQFRKAWKMKRDVFYSMLRNILVAVFH
GSLYTNLSPGAIQSRLSLLFFAIMFVMMANQSFIPKYVSLLNHIVNPSAP
NLLVFTVNSLTVLLMTACSFTANEERACTALCPTGSAPPWPIFPSVPSLA
SPTAPSSTRCPG* back to topmRNA from alignment at scaffold_8:670129..672795- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4030 ID=mRNA_4030|Name=jgi.p|Nanoce1779_2|586212|organism=Nannochloropsis oceanica|type=mRNA|length=2667bp|location=Sequence derived from alignment at scaffold_8:670129..672795- (Nannochloropsis oceanica)
TTTTGAGCTCCGCGAACTACACCGGCATCAAAAACGTCATCGACAAGATT
CTCCTCGCCAAGGCGAATCAGCAGCAGAATGAGAGGAAGCAGAGGAACCA
TGGCAGTGAAGGACATAGGACATTCCAAGGACGAGCCGCTGTGGCGGCAG
TACCTCTAAGGATCCGAGGCGACAGCTTCATGGTCACGCTCCTCGAGCCC
GAGAGATACCCGCGGTCTACCTTTGCCCAGATGTACATCTTGAGTCACCG
GCAGTTTCGCAAGGCCTGGAAAATGGTATATCTGAGCTTCACTTTAGCGC
GGGAAAAAGGGAGATTTATATTTCTGTAAATGATACTGACACGCTCAATT
TTTCACTTTCCCCCCCCTCCTTCGTTGACCCTTTCCCCATACAGAAACGC
GACGTGTTCTACAGCATGCTCCGCAACATTTTAGTGGCCGTCTTTCACGG
GAGCCTCTACACGAACTTGTCGCCGGGCGCCATCCAGTCGCGGCTATCTC
TCCTTTTCTTCGCCATTATGTTCGTTATGATGGCCAACCAGTCCTTCATT
CCCAAGTACGTCTCTCTTTTAAACCACATAGTCAATCCTTCGGCCCCAAA
CTTACTTGTCTTCACCGTCAACTCACTAACAGTGTTACTGATGACCGCCT
GCTCTTTTACCGCGAACGAGGAGCGGGCGTGTACGGCACTGTGCCCTACT
GGTTCAGCTCCTCCTTGGCCTATATTCCCCAGTGTGCCCTCGCTAGCATC
ACCTACTGCACCGTCGTCTACAAGATGTCCGGGCTGAACGCCGCTGCAGG
TACGTAAGGAGCGAACAAAGGAGATGAGCCCCTCCTAAATAATTGTACGC
GTATTCACTTTCTCGACAAAACAGGCGCCTTTGGTTACTTTTGCCTGGTC
GTGACCATGTGCGGGCTCTGCGGCATGTACTTCTGCCAACTGGTCTCGTT
GGCGTCCCCCAACTCCCAAATCGCTGTCTCCGTCTTCCCCGCGGCGCTAT
TTTTGGTTGTAGCTTTTGCGGGCTTCGTTGTCCGGTTGCCTTCCTTGCCT
GACTGGTTGGGTTCGTGGGCACCGATCATTAGTTTCGCCCGGTGGGGGTT
TCAGGGGTTGGTCATCAACGAGTTTAAGGGCAACGAGAAGATCGACTATT
ACGAGATCATTCAGATGCAGATTCCCGAACCCTATCAAGCCTTTATCGAA
AACTTTGGGTTTGAAGGCTATTCGAAGTACGACTCACTGCCTATTCTTGC
CATATGTCTGGCCATTTTGTGGCTAGCCACCATAATTCCCATCAAATTCG
TGTCGTTTGAGAAGCGATGATGTGTGTATAATGATTATGTAGGAACTTCA
TCTTCCGATGATGTATAACATGGATGTGTACGTGTTTAATTTATCAAACC
TAAGCTCTAGGCACAATATAAGAGGATGAAAGGAAAAAGTAGCACACTTA
ACCTGTAAAGCGGTGCTTATCTCCTTCTTATCCAGCGAATAACATCTATC
AATCGACACTCCAGCTGCCCTTGTTTTCTGTGATCATGTGCATGGATGTC
ACCCTGGCACCCGAAGTCAGACTTGCTAAATAATACCATTATCCAGTGCT
TACCAATCGATATGGACCATTCCTGCACGCCGTTACTACATTTAGGCTTT
TACGAAAGGTTAAAGTCTCCCTGATTAAACTTCTATTAACTTTGGGGACC
CGAAAAGGTGATCATTCCGCCTTGCCGAATTACCTAACGTTTCGAACGAT
AGAACAAGTTAGGTGAAAATGCCGTTCGTATCAGGATCCGCGGCCAATGT
CACATGAAAAACAGAATCTTTGTTGTGTTTGGTCTTGTTTTGTCTTTGCT
TTTCTCGAATGCACACTTCTGAAGGTCTTTTTATAGCTCGTGCCGAAGCA
GGCCGACACCGTACCTTGCAGAGCAACCCATTTTCATTTTTGGTAACTGG
TGCTTGACAACCAGATAAAACCAGTGATACCTACCACTGGGAAACTACCA
ATTGGCATTGTAAGTAATGTATCAAGTATCTGGTTACGATGTGGATGATT
TTGAATGACGCGGGGGGACAGAGAGCCAGGGGGGGGGGCTAGTATCCGAG
AGCACCCCTATTAAGCTCATTCGAACGACCACAAATTTTTTCGGTCATGG
TCAAGCCTCGCCGGTTCGAAGAAAGAGTAGAGACACGAGAGCACCCCTAT
TAAGCTCATTCGAACGACCACAAATTTTTTCGGTCATGGTCAAGCCTCGC
CGGTTCGAAGAATGAGTAGAGACACAAGTGGAATTTGTGCGTGAAGCAGA
GGGGTAATGGGAAGCCCCCGATTGCCCTTTTTCTTTATTTTGGCTTGAAA
TGATAGATACCAATCGGTACTTTGACCCTAGGGGTAGCCTACTTGGTGTT
CTTTCCCAACCTACTTGGTACTCTCGGCGTCATACTTGGTAAGTATACCA
ATTGGCAAATTGGCGTCGAGCTACAAGTACTACCAAGTACCCGTGAAGAG
ATACCATATACGGTCCTGGGAGCAGAGCGCTCACTTTGATTTGATCGATT
GATTTCTTGATTATTTTGTGAGATCGATATTGACCTTGGTTAAGCCTATT
AATTTATCGAAATCTCTTGTGGGTCATCAATAACCATTTACGAGTCAGGT
GGTGGAGTGGAGACTGT back to topCoding sequence (CDS) from alignment at scaffold_8:670129..672795- >mRNA_4030 ID=mRNA_4030|Name=jgi.p|Nanoce1779_2|586212|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_8:670129..672795- (Nannochloropsis oceanica)
AAACGCGACGTGTTCTACAGCATGCTCCGCAACATTTTAGTGGCCGTCTT
TCACGGGAGCCTCTACACGAACTTGTCGCCGGGCGCCATCCAGTCGCGGC
TATCTCTCCTTTTCTTCGCCATTATGTTCGTTATGATGGCCAACCAGTCC
TTCATTCCCAAGTACGTCTCTCTTTTAAACCACATAGTCAATCCTTCGGC
CCCAAACTTACTTGTCTTCACCGTCAACTCACTAACAGTGTTACTGATGA
CCGCCTGCTCTTTTACCGCGAACGAGGAGCGGGCGTGTACGGCACTGTGC
CCTACTGGTTCAGCTCCTCCTTGGCCTATATTCCCCAGTGTGCCCTCGCT
AGCATCACCTACTGCACCGTCGTCTACAAGATGTCCGGGCTGAATGGTCA
CGCTCCTCGAGCCCGAGAGATACCCGCGGTCTACCTTTGCCCAGATGTAC
ATCTTGAGTCACCGGCAGTTTCGCAAGGCCTGGAAAATGAAACGCGACGT
GTTCTACAGCATGCTCCGCAACATTTTAGTGGCCGTCTTTCACGGGAGCC
TCTACACGAACTTGTCGCCGGGCGCCATCCAGTCGCGGCTATCTCTCCTT
TTCTTCGCCATTATGTTCGTTATGATGGCCAACCAGTCCTTCATTCCCAA
GTACGTCTCTCTTTTAAACCACATAGTCAATCCTTCGGCCCCAAACTTAC
TTGTCTTCACCGTCAACTCACTAACAGTGTTACTGATGACCGCCTGCTCT
TTTACCGCGAACGAGGAGCGGGCGTGTACGGCACTGTGCCCTACTGGTTC
AGCTCCTCCTTGGCCTATATTCCCCAGTGTGCCCTCGCTAGCATCACCTA
CTGCACCGTCGTCTACAAGATGTCCGGGCTGAATGGTCACGCTCCTCGAG
CCCGAGAGATACCCGCGGTCTACCTTTGCCCAGATGTACATCTTGAGTCA
CCGGCAGTTTCGCAAGGCCTGGAAAATG back to top
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