jgi.p|Nanoce1779_2|577230, mRNA_403 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577230
Unique NamemRNA_403
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1231
Alignment locationscaffold_3:999637..1000867 -

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Properties
Property NameValue
TranscriptId577316
TrackFilteredModels2
ProteinId577230
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:999637..1000867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577230gene_403Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577230mRNA_403-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_403CDS_403Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_403 ID=mRNA_403|Name=jgi.p|Nanoce1779_2|577230|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp
ACAGGTTCCGAGCCGCGCCATTATTGGCACTTCCTGAGACCATGACGACG
TCCTCTCGCTGCCAAGCACCAGCAAGGCGGATATCGCCCAGCCTCCTCCC
TCTCCTCTTCCTTTTTGTCGTCGTGGTGTTCTACCTACCGTGTCCTGTCG
CCGCTTTTGGCTCCCTCCGCCACCTACATAGCACTACCAGCATCATAAGC
TTAAAACTTACTACACTGCATGCCCTGTCATCAGCCGCATCCGACGACAA
TGCCGACAGTGCTTCCTCACCCTCCTCCTTTCCAAGTTGCAGTAGCATTA
GCACCACAGGCATCACCCCCCTTGTTACTCCCACCATCCCCACGACTGCA
AGAAGAAGATCACTCGCTCCCGCTCAGTCCACCTCTCGCAGTGGTGCCTT
GCGGCAAGGCCTGCTGGCCGTGGCAGCCGCAATGGGCATCTCCTTCTCCT
CTCCCTCCCCTTTCCAGCCACCCTCTGCCTTTGCTGCCACCAACAGCGTG
CAAGACTCGGACTTACCGCCTGTTGCTTTCAAAACCAAAAGTGGACTCCG
GTACTATGATGTGCGAAAAGGTGAAGGTGCCAGTCCGAAATGGGGTCAAG
TCGCCATCATTCAATATGAGGGCTATATACGTGCCTCGCCCTTCTCAAAA
CTCGTCTTGTTCGACGACACTTACGCTCGCAAGACCCCTTATTTGGTGAA
ACATGGGAATGGTCGTGTCATCCGTGGGTTGGACGAAGGGTTGCATACCA
TGAGACTGGGAGGACTGCGACGCATTGTCGTACCGCTTGAACTAGGATAC
ACCAAAACAGGCCTCGGTCCCCTCCCTCCCAATGCCTTTCGCCGCAAAAT
TTTGGTGCGTGAGCTCGAAAAGGCCGAGACCAACGATCCGATGGGCGAAA
TAGTGTATGATGTGGAACTCGTATCATTGTACGATGATGAGGCGGATTTG
GGGTATTATGACGACTTGACTTTTGACTCGCAATATCTCCAAGATGGGAT
GGCGAAAAGCTTGCAGGAATTGAGGGATAAGGGGGTAAAGGTACCATCAA
CCAAGACCTTTATGACCAAACCGGAGATTTTGGGAAGTAGAAGGCAGGAG
ATAGAATTAAATTTGCCGGAGGAGGATTGATAGGAGGGGGTGACAAGGCA
CGTAAAGATAATTTGACTCACGGAAGGTCGGCAAGAAAGACAAAAAGCTG
CGTTGGTGTAGATATGTGGTAAATATGCGTT
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protein sequence of jgi.p|Nanoce1779_2|577230

>mRNA_403-protein ID=mRNA_403-protein|Name=jgi.p|Nanoce1779_2|577230|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MTTSSRCQAPARRISPSLLPLLFLFVVVVFYLPCPVAAFGSLRHLHSTTS
IISLKLTTLHALSSAASDDNADSASSPSSFPSCSSISTTGITPLVTPTIP
TTARRRSLAPAQSTSRSGALRQGLLAVAAAMGISFSSPSPFQPPSAFAAT
NSVQDSDLPPVAFKTKSGLRYYDVRKGEGASPKWGQVAIIQYEGYIRASP
FSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGLHTMRLGGLRRIVVPLE
LGYTKTGLGPLPPNAFRRKILVRELEKAETNDPMGEIVYDVELVSLYDDE
ADLGYYDDLTFDSQYLQDGMAKSLQELRDKGVKVPSTKTFMTKPEILGSR
RQEIELNLPEED*
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mRNA from alignment at scaffold_3:999637..1000867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_403 ID=mRNA_403|Name=jgi.p|Nanoce1779_2|577230|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp|location=Sequence derived from alignment at scaffold_3:999637..1000867- (Nannochloropsis oceanica)
ACAGGTTCCGAGCCGCGCCATTATTGGCACTTCCTGAGACCATGACGACG
TCCTCTCGCTGCCAAGCACCAGCAAGGCGGATATCGCCCAGCCTCCTCCC
TCTCCTCTTCCTTTTTGTCGTCGTGGTGTTCTACCTACCGTGTCCTGTCG
CCGCTTTTGGCTCCCTCCGCCACCTACATAGCACTACCAGCATCATAAGC
TTAAAACTTACTACACTGCATGCCCTGTCATCAGCCGCATCCGACGACAA
TGCCGACAGTGCTTCCTCACCCTCCTCCTTTCCAAGTTGCAGTAGCATTA
GCACCACAGGCATCACCCCCCTTGTTACTCCCACCATCCCCACGACTGCA
AGAAGAAGATCACTCGCTCCCGCTCAGTCCACCTCTCGCAGTGGTGCCTT
GCGGCAAGGCCTGCTGGCCGTGGCAGCCGCAATGGGCATCTCCTTCTCCT
CTCCCTCCCCTTTCCAGCCACCCTCTGCCTTTGCTGCCACCAACAGCGTG
CAAGACTCGGACTTACCGCCTGTTGCTTTCAAAACCAAAAGTGGACTCCG
GTACTATGATGTGCGAAAAGGTGAAGGTGCCAGTCCGAAATGGGGTCAAG
TCGCCATCATTCAATATGAGGGCTATATACGTGCCTCGCCCTTCTCAAAA
CTCGTCTTGTTCGACGACACTTACGCTCGCAAGACCCCTTATTTGGTGAA
ACATGGGAATGGTCGTGTCATCCGTGGGTTGGACGAAGGGTTGCATACCA
TGAGACTGGGAGGACTGCGACGCATTGTCGTACCGCTTGAACTAGGATAC
ACCAAAACAGGCCTCGGTCCCCTCCCTCCCAATGCCTTTCGCCGCAAAAT
TTTGGTGCGTGAGCTCGAAAAGGCCGAGACCAACGATCCGATGGGCGAAA
TAGTGTATGATGTGGAACTCGTATCATTGTACGATGATGAGGCGGATTTG
GGGTATTATGACGACTTGACTTTTGACTCGCAATATCTCCAAGATGGGAT
GGCGAAAAGCTTGCAGGAATTGAGGGATAAGGGGGTAAAGGTACCATCAA
CCAAGACCTTTATGACCAAACCGGAGATTTTGGGAAGTAGAAGGCAGGAG
ATAGAATTAAATTTGCCGGAGGAGGATTGATAGGAGGGGGTGACAAGGCA
CGTAAAGATAATTTGACTCACGGAAGGTCGGCAAGAAAGACAAAAAGCTG
CGTTGGTGTAGATATGTGGTAAATATGCGTT
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Coding sequence (CDS) from alignment at scaffold_3:999637..1000867-

>mRNA_403 ID=mRNA_403|Name=jgi.p|Nanoce1779_2|577230|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_3:999637..1000867- (Nannochloropsis oceanica)
ATGACGACGTCCTCTCGCTGCCAAGCACCAGCAAGGCGGATATCGCCCAG
CCTCCTCCCTCTCCTCTTCCTTTTTGTCGTCGTGGTGTTCTACCTACCGT
GTCCTGTCGCCGCTTTTGGCTCCCTCCGCCACCTACATAGCACTACCAGC
ATCATAAGCTTAAAACTTACTACACTGCATGCCCTGTCATCAGCCGCATC
CGACGACAATGCCGACAGTGCTTCCTCACCCTCCTCCTTTCCAAGTTGCA
GTAGCATTAGCACCACAGGCATCACCCCCCTTGTTACTCCCACCATCCCC
ACGACTGCAAGAAGAAGATCACTCGCTCCCGCTCAGTCCACCTCTCGCAG
TGGTGCCTTGCGGCAAGGCCTGCTGGCCGTGGCAGCCGCAATGGGCATCT
CCTTCTCCTCTCCCTCCCCTTTCCAGCCACCCTCTGCCTTTGCTGCCACC
AACAGCGTGCAAGACTCGGACTTACCGCCTGTTGCTTTCAAAACCAAAAG
TGGACTCCGGTACTATGATGTGCGAAAAGGTGAAGGTGCCAGTCCGAAAT
GGGGTCAAGTCGCCATCATTCAATATGAGGGCTATATACGTGCCTCGCCC
TTCTCAAAACTCGTCTTGTTCGACGACACTTACGCTCGCAAGACCCCTTA
TTTGGTGAAACATGGGAATGGTCGTGTCATCCGTGGGTTGGACGAAGGGT
TGCATACCATGAGACTGGGAGGACTGCGACGCATTGTCGTACCGCTTGAA
CTAGGATACACCAAAACAGGCCTCGGTCCCCTCCCTCCCAATGCCTTTCG
CCGCAAAATTTTGGTGCGTGAGCTCGAAAAGGCCGAGACCAACGATCCGA
TGGGCGAAATAGTGTATGATGTGGAACTCGTATCATTGTACGATGATGAG
GCGGATTTGGGGTATTATGACGACTTGACTTTTGACTCGCAATATCTCCA
AGATGGGATGGCGAAAAGCTTGCAGGAATTGAGGGATAAGGGGGTAAAGG
TACCATCAACCAAGACCTTTATGACCAAACCGGAGATTTTGGGAAGTAGA
AGGCAGGAGATAGAATTAAATTTGCCGGAGGAGGATTGA
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Synonyms
Publications