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Properties
| Property Name | Value |
|---|
| TranscriptId | 586287 |
| Track | FilteredModels2 |
| ProteinId | 586201 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:669661..672795 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4029 ID=mRNA_4029|Name=jgi.p|Nanoce1779_2|586201|organism=Nannochloropsis oceanica|type=mRNA|length=2821bp
TTTTGAGCTCCGCGAACTACACCGGCATCAAAAACGTCATCGACAAGATT
CTCCTCGCCAAGGCGAATCAGCAGCAGAATGAGAGGAAGCAGAGGAACCA
TGGCAGTGAAGGACATAGGACATTCCAAGGACGAGCCGCTGTGGCGGCAG
TACCTCTAAGGATCCGAGGCGACAGCTTCATGGTCACGCTCCTCGAGCCC
GAGAGATACCCGCGGTCTACCTTTGCCCAGATGTACATCTTGAGTCACCG
GCAGTTTCGCAAGGCCTGGAAAATGGTATATCTGAGCTTCATTGTCTTCA
CCGTCAACTCACTAACAGTGTTACTGATGACCGCCTGCTCTTTTACCGCG
AACGAGGAGCGGGCGTGTACGGCACTGTGCCCTACTGGTTCAGCTCCTCC
TTGGCCTATATTCCCCAGTGTGCCCTCGCTAGCATCACCTACTGCACCGT
CGTCTACAAGATGTCCGGGCTGAACGCCGCTGCAGGTACGTAAGGAGCGA
ACAAAGGAGATGAGCCCCTCCTAAATAATTGTACGCGTATTCACTTTCTC
GACAAAACAGGCGCCTTTGGTTACTTTTGCCTGGTCGTGACCATGTGCGG
GCTCTGCGGCATGTACTTCTGCCAACTGGTCTCGTTGGCGTCCCCCAACT
CCCAAATCGCTGTCTCCGTCTTCCCCGCGGCGCTATTTTTGGTTGTAGCT
TTTGCGGGCTTCGTTGTCCGGTTGCCTTCCTTGCCTGACTGGTTGGGTTC
GTGGGCACCGATCATTAGTTTCGCCCGGTGGGGGTTTCAGGGGTTGGTCA
TCAACGAGTTTAAGGGCAACGAGAAGATCGACTATTACGAGATCATTCAG
ATGCAGATTCCCGAACCCTATCAAGCCTTTATCGAAAACTTTGGGTTTGA
AGGCTATTCGAAGTACGACTCACTGCCTATTCTTGCCATATGTCTGGCCA
TTTTGTGGCTAGCCACCATAATTCCCATCAAATTCGTGTCGTTTGAGAAG
CGATGATGTGTGTATAATGATTATGTAGGAACTTCATCTTCCGATGATGT
ATAACATGGATGTGTACGTGTTTAATTTATCAAACCTAAGCTCTAGGCAC
AATATAAGAGGATGAAAGGAAAAAGTAGCACACTTAACCTGTAAAGCGGT
GCTTATCTCCTTCTTATCCAGCGAATAACATCTATCAATCGACACTCCAG
CTGCCCTTGTTTTCTGTGATCATGTGCATGGATGTCACCCTGGCACCCGA
AGTCAGACTTGCTAAATAATACCATTATCCAGTGCTTACCAATCGATATG
GACCATTCCTGCACGCCGTTACTACATTTAGGCTTTTACGAAAGGTTAAA
GTCTCCCTGATTAAACTTCTATTAACTTTGGGGACCCGAAAAGGTGATCA
TTCCGCCTTGCCGAATTACCTAACGTTTCGAACGATAGAACAAGTTAGGT
GAAAATGCCGTTCGTATCAGGATCCGCGGCCAATGTCACATGAAAAACAG
AATCTTTGTTGTGTTTGGTCTTGTTTTGTCTTTGCTTTTCTCGAATGCAC
ACTTCTGAAGGTCTTTTTATAGCTCGTGCCGAAGCAGGCCGACACCGTAC
CTTGCAGAGCAACCCATTTTCATTTTTGGTAACTGGTGCTTGACAACCAG
ATAAAACCAGTGATACCTACCACTGGGAAACTACCAATTGGCATTGTAAG
TAATGTATCAAGTATCTGGTTACGATGTGGATGATTTTGAATGACGCGGG
GGGACAGAGAGCCAGGGGGGGGGGCTAGTATCCGAGAGCACCCCTATTAA
GCTCATTCGAACGACCACAAATTTTTTCGGTCATGGTCAAGCCTCGCCGG
TTCGAAGAAAGAGTAGAGACACGAGAGCACCCCTATTAAGCTCATTCGAA
CGACCACAAATTTTTTCGGTCATGGTCAAGCCTCGCCGGTTCGAAGAATG
AGTAGAGACACAAGTGGAATTTGTGCGTGAAGCAGAGGGGTAATGGGAAG
CCCCCGATTGCCCTTTTTCTTTATTTTGGCTTGAAATGATAGATACCAAT
CGGTACTTTGACCCTAGGGGTAGCCTACTTGGTGTTCTTTCCCAACCTAC
TTGGTACTCTCGGCGTCATACTTGGTAAGTATACCAATTGGCAAATTGGC
GTCGAGCTACAAGTACTACCAAGTACCCGTGAAGAGATACCATATACGGT
CCTGGGAGCAGAGCGCTCACTTTGATTTGATCGATTGATTTCTTGATTAT
TTTGTGAGATCGATATTGACCTTGGTTAAGCCTATTAATTTATCGAAATC
TCTTGTGGGTCATCAATAACCATTTACGAGTCAGGTGGTGGAGTGGAGAC
TGTGCCATGATTAGGGTGTGGGGAAGGTGAGATGGACGGGACGCTCACTG
GCAGGTTATTGATCAACCTCCTCTATCTAGAGGCCGGTTCCCCAGAGGCA
GATTGCCTAGAGTTTGTTCTCGATCAGGAATACAAATGAAGCAAAATGTG
CATGGTGAAGGAAATAGTGCGTCTCGAGATGCTTACGTACACAAAGTGTC
AGCCCAAACGTAGAAGTAACTTAAAATTGTGAGCAGTGCAAGTATGACCG
ACCCCACAAAGGAAGTGTTCGGCGGCCAGCGGAAAGGAACGCCGTTGCTC
GCATGGACACCACCAGCCCAGGCGTACAGCGAGGACTCGCGTGGCATTGC
TGGACTGACCGCTTACCACCTTTTTCACCACTCCCTTCACATTCCACTTT
AGGTGTTCCCGCCCACCCCGCCTACCCTTGTACCGCCTTCGCTTATTCAT
CATCAGCGGCCTTCATCCACA back to topprotein sequence of jgi.p|Nanoce1779_2|586201 >mRNA_4029-protein ID=mRNA_4029-protein|Name=jgi.p|Nanoce1779_2|586201|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MCGLCGMYFCQLVSLASPNSQIAVSVFPAALFLVVAFAGFVVRLPSLPDW
LGSWAPIISFARWGFQGLVINEFKGNEKIDYYEIIQMQIPEPYQAFIENF
GFEGYSKYDSLPILAICLAILWLATIIPIKFVSFEKR* back to topmRNA from alignment at scaffold_8:669661..672795- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4029 ID=mRNA_4029|Name=jgi.p|Nanoce1779_2|586201|organism=Nannochloropsis oceanica|type=mRNA|length=3135bp|location=Sequence derived from alignment at scaffold_8:669661..672795- (Nannochloropsis oceanica)
TTTTGAGCTCCGCGAACTACACCGGCATCAAAAACGTCATCGACAAGATT
CTCCTCGCCAAGGCGAATCAGCAGCAGAATGAGAGGAAGCAGAGGAACCA
TGGCAGTGAAGGACATAGGACATTCCAAGGACGAGCCGCTGTGGCGGCAG
TACCTCTAAGGATCCGAGGCGACAGCTTCATGGTCACGCTCCTCGAGCCC
GAGAGATACCCGCGGTCTACCTTTGCCCAGATGTACATCTTGAGTCACCG
GCAGTTTCGCAAGGCCTGGAAAATGGTATATCTGAGCTTCACTTTAGCGC
GGGAAAAAGGGAGATTTATATTTCTGTAAATGATACTGACACGCTCAATT
TTTCACTTTCCCCCCCCTCCTTCGTTGACCCTTTCCCCATACAGAAACGC
GACGTGTTCTACAGCATGCTCCGCAACATTTTAGTGGCCGTCTTTCACGG
GAGCCTCTACACGAACTTGTCGCCGGGCGCCATCCAGTCGCGGCTATCTC
TCCTTTTCTTCGCCATTATGTTCGTTATGATGGCCAACCAGTCCTTCATT
CCCAAGTACGTCTCTCTTTTAAACCACATAGTCAATCCTTCGGCCCCAAA
CTTACTTGTCTTCACCGTCAACTCACTAACAGTGTTACTGATGACCGCCT
GCTCTTTTACCGCGAACGAGGAGCGGGCGTGTACGGCACTGTGCCCTACT
GGTTCAGCTCCTCCTTGGCCTATATTCCCCAGTGTGCCCTCGCTAGCATC
ACCTACTGCACCGTCGTCTACAAGATGTCCGGGCTGAACGCCGCTGCAGG
TACGTAAGGAGCGAACAAAGGAGATGAGCCCCTCCTAAATAATTGTACGC
GTATTCACTTTCTCGACAAAACAGGCGCCTTTGGTTACTTTTGCCTGGTC
GTGACCATGTGCGGGCTCTGCGGCATGTACTTCTGCCAACTGGTCTCGTT
GGCGTCCCCCAACTCCCAAATCGCTGTCTCCGTCTTCCCCGCGGCGCTAT
TTTTGGTTGTAGCTTTTGCGGGCTTCGTTGTCCGGTTGCCTTCCTTGCCT
GACTGGTTGGGTTCGTGGGCACCGATCATTAGTTTCGCCCGGTGGGGGTT
TCAGGGGTTGGTCATCAACGAGTTTAAGGGCAACGAGAAGATCGACTATT
ACGAGATCATTCAGATGCAGATTCCCGAACCCTATCAAGCCTTTATCGAA
AACTTTGGGTTTGAAGGCTATTCGAAGTACGACTCACTGCCTATTCTTGC
CATATGTCTGGCCATTTTGTGGCTAGCCACCATAATTCCCATCAAATTCG
TGTCGTTTGAGAAGCGATGATGTGTGTATAATGATTATGTAGGAACTTCA
TCTTCCGATGATGTATAACATGGATGTGTACGTGTTTAATTTATCAAACC
TAAGCTCTAGGCACAATATAAGAGGATGAAAGGAAAAAGTAGCACACTTA
ACCTGTAAAGCGGTGCTTATCTCCTTCTTATCCAGCGAATAACATCTATC
AATCGACACTCCAGCTGCCCTTGTTTTCTGTGATCATGTGCATGGATGTC
ACCCTGGCACCCGAAGTCAGACTTGCTAAATAATACCATTATCCAGTGCT
TACCAATCGATATGGACCATTCCTGCACGCCGTTACTACATTTAGGCTTT
TACGAAAGGTTAAAGTCTCCCTGATTAAACTTCTATTAACTTTGGGGACC
CGAAAAGGTGATCATTCCGCCTTGCCGAATTACCTAACGTTTCGAACGAT
AGAACAAGTTAGGTGAAAATGCCGTTCGTATCAGGATCCGCGGCCAATGT
CACATGAAAAACAGAATCTTTGTTGTGTTTGGTCTTGTTTTGTCTTTGCT
TTTCTCGAATGCACACTTCTGAAGGTCTTTTTATAGCTCGTGCCGAAGCA
GGCCGACACCGTACCTTGCAGAGCAACCCATTTTCATTTTTGGTAACTGG
TGCTTGACAACCAGATAAAACCAGTGATACCTACCACTGGGAAACTACCA
ATTGGCATTGTAAGTAATGTATCAAGTATCTGGTTACGATGTGGATGATT
TTGAATGACGCGGGGGGACAGAGAGCCAGGGGGGGGGGCTAGTATCCGAG
AGCACCCCTATTAAGCTCATTCGAACGACCACAAATTTTTTCGGTCATGG
TCAAGCCTCGCCGGTTCGAAGAAAGAGTAGAGACACGAGAGCACCCCTAT
TAAGCTCATTCGAACGACCACAAATTTTTTCGGTCATGGTCAAGCCTCGC
CGGTTCGAAGAATGAGTAGAGACACAAGTGGAATTTGTGCGTGAAGCAGA
GGGGTAATGGGAAGCCCCCGATTGCCCTTTTTCTTTATTTTGGCTTGAAA
TGATAGATACCAATCGGTACTTTGACCCTAGGGGTAGCCTACTTGGTGTT
CTTTCCCAACCTACTTGGTACTCTCGGCGTCATACTTGGTAAGTATACCA
ATTGGCAAATTGGCGTCGAGCTACAAGTACTACCAAGTACCCGTGAAGAG
ATACCATATACGGTCCTGGGAGCAGAGCGCTCACTTTGATTTGATCGATT
GATTTCTTGATTATTTTGTGAGATCGATATTGACCTTGGTTAAGCCTATT
AATTTATCGAAATCTCTTGTGGGTCATCAATAACCATTTACGAGTCAGGT
GGTGGAGTGGAGACTGTGCCATGATTAGGGTGTGGGGAAGGTGAGATGGA
CGGGACGCTCACTGGCAGGTTATTGATCAACCTCCTCTATCTAGAGGCCG
GTTCCCCAGAGGCAGATTGCCTAGAGTTTGTTCTCGATCAGGAATACAAA
TGAAGCAAAATGTGCATGGTGAAGGAAATAGTGCGTCTCGAGATGCTTAC
GTACACAAAGTGTCAGCCCAAACGTAGAAGTAACTTAAAATTGTGAGCAG
TGCAAGTATGACCGACCCCACAAAGGAAGTGTTCGGCGGCCAGCGGAAAG
GAACGCCGTTGCTCGCATGGACACCACCAGCCCAGGCGTACAGCGAGGAC
TCGCGTGGCATTGCTGGACTGACCGCTTACCACCTTTTTCACCACTCCCT
TCACATTCCACTTTAGGTGTTCCCGCCCACCCCGCCTACCCTTGTACCGC
CTTCGCTTATTCATCATCAGCGGCCTTCATCCACA back to topCoding sequence (CDS) from alignment at scaffold_8:669661..672795- >mRNA_4029 ID=mRNA_4029|Name=jgi.p|Nanoce1779_2|586201|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_8:669661..672795- (Nannochloropsis oceanica)
ATGTGCGGGCTCTGCGGCATGTACTTCTGCCAACTGGTCTCGTTGGCGTC
CCCCAACTCCCAAATCGCTGTCTCCGTCTTCCCCGCGGCGCTATTTTTGG
TTGTAGCTTTTGCGGGCTTCGTTGTCCGGTTGCCTTCCTTGCCTGACTGG
TTGGGTTCGTGGGCACCGATCATTAGTTTCGCCCGGTGGGGGTTTCAGGG
GTTGGTCATCAACGAGTTTAAGGGCAACGAGAAGATCGACTATTACGAGA
TCATTCAGATGCAGATTCCCGAACCCTATCAAGCCTTTATCGAAAACTTT
GGGTTTGAAGGCTATTCGAAGTACGACTCACTGCCTATTCTTGCCATATG
TCTGGCCATTTTGTGGCTAGCCACCATAATTCCCATCAAATTCGTGTCGT
TTGAGAAGCGATGA back to top
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