jgi.p|Nanoce1779_2|586199, mRNA_4028 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586199
Unique NamemRNA_4028
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length646
Alignment locationscaffold_8:668537..669731 -

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Properties
Property NameValue
TranscriptId586285
TrackFilteredModels2
ProteinId586199
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:668537..669731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586199gene_4028Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586199mRNA_4028-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4028CDS_4028Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4028 ID=mRNA_4028|Name=jgi.p|Nanoce1779_2|586199|organism=Nannochloropsis oceanica|type=mRNA|length=646bp
AGGTGTTCCCGCCCACCCCGCCTACCCTTGTACCGCCTTCGCTTATTCAT
CATCAGCGGCCTTCATCCACAGCCTCCGCGTCCGTCTCGTTCTGCACGTC
GTACATAGCTCACTACAAGTGTCAGTGATGGGACTCAGCGTTGTTCCAGC
ACTCAAGGCTCGAGTGATGGCCGTGGAATTTGTGAAAAACAACCCGCGGA
TCAAGGCGATGCTAGACCACCCCGCTGGACCGTTTACGATTCATTTCTGG
GCGCCGTCGTTCAAATGGGGCATTTCCTTGGCAAACATCGCCGACTTCAA
CCGGCCAGCTGAATTCATCTCCGTGCCGCAGCAACTTGCGGTGACTGCCA
CGGGCATTATCTGGTCACGGTACAGCTTCGTCATCACCCCTGTCAACTAC
AACCTCTTCAGTGTCAATGCCTTTATGGCCGTCACGGGCAGCTACCAGCT
TTGGCGTAAATTTACCACCCAAGCTACGCCCACTGCGCCTCCCAACTCGG
CCTCGGTCTCGTCTTGAGTTATGCATGCGAAGGACAGAGAATGAAGGAAG
GAGCGGGGGAGGTGCATAGAAGGGTTATTAAGTTGTTGGCTATGTGTTGT
CCTAACGTTCAATGAAAACACAACGCTCTCGCGAGACAGTGTCAAA
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protein sequence of jgi.p|Nanoce1779_2|586199

>mRNA_4028-protein ID=mRNA_4028-protein|Name=jgi.p|Nanoce1779_2|586199|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MGLSVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGIS
LANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFM
AVTGSYQLWRKFTTQATPTAPPNSASVSS*
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mRNA from alignment at scaffold_8:668537..669731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4028 ID=mRNA_4028|Name=jgi.p|Nanoce1779_2|586199|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp|location=Sequence derived from alignment at scaffold_8:668537..669731- (Nannochloropsis oceanica)
AGGTGTTCCCGCCCACCCCGCCTACCCTTGTACCGCCTTCGCTTATTCAT
CATCAGCGGCCTTCATCCACAGCCTCCGCGTCCGTCTCGTTCTGCACGTC
GTACATAGCTCACTACAAGTGTCAGTGATGGGACTCAGCGTTGTTCCAGC
ACTCAAGGCTCGAGTGATGGCCGTGGAATTTGTGAAAAACAACCCGCGGA
TCAAGGCGATGCTAGACCACCCCGCTGGACCGTTTACGAGTAAGTGCTGT
GCTAAGGGTTAGGGTTAGGGTCAGAGCGCTTAACCTGCATTTATGCCGGT
TCGGGTGTCCGCTCTTACCCTTTATCTTTCCTTACATAACAATGTCTGCT
CGCTGATTACATGCTTGCCCCGCCCTGCTCCCATATGCCCGTGTGTTCCT
CTATAATATTTGCTCTGCACCCTCCATCATATTGGCTCTGCAACCTCCAC
GTCAGGGCGTCATCGTATTGGTAAATGACTGCATATGTCACATTTTTCAA
AAGTTCCATACATCCTGCATCGCTACACATGTTGCCACGAATTGGAAAAA
TCCGACAAAAAACCTTACTCGTTGTCTTCTCATCTGTTCATCCCATATGT
CAACTCGCCCATCCATGTTCAGTTCATTTCTGGGCGCCGTCGTTCAAATG
GGGCATTTCCTTGGCAAACATCGCCGACTTCAACCGGCCAGCTGAATTCA
TCTCCGTGCCGCAGCAACTTGGTAAGTACAATCAAGCACGTGACGCTTTA
CCTCCTTCTCTCCCCTGCCTCTCTGTTCCTCTTTCGCTGCTTCACAAAGC
GCAATAGTGTTCGACCGTGTTTTTAAGATGGCATACGCAACCTTTAAAGC
ATGCGATTGACGCTTCTTCCACCCATTTAAACCACAGCGGTGACTGCCAC
GGGCATTATCTGGTCACGGTACAGCTTCGTCATCACCCCTGTCAACTACA
ACCTCTTCAGTGTCAATGCCTTTATGGCCGTCACGGGCAGCTACCAGCTT
TGGCGTAAATTTACCACCCAAGCTACGCCCACTGCGCCTCCCAACTCGGC
CTCGGTCTCGTCTTGAGTTATGCATGCGAAGGACAGAGAATGAAGGAAGG
AGCGGGGGAGGTGCATAGAAGGGTTATTAAGTTGTTGGCTATGTGTTGTC
CTAACGTTCAATGAAAACACAACGCTCTCGCGAGACAGTGTCAAA
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Coding sequence (CDS) from alignment at scaffold_8:668537..669731-

>mRNA_4028 ID=mRNA_4028|Name=jgi.p|Nanoce1779_2|586199|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_8:668537..669731- (Nannochloropsis oceanica)
CGGTGACTGCCACGGGCATTATCTGGTCACGGTACAGCTTCGTCATCACC
CCTGTCAACTACAACCTCTTCAGTGTCAATGCCTTTATGGCCGTCACGGG
CAGCTACCAGCTTTGGCGTAAATTTACCACCCAAGCTACGCCCACTGCGC
CTCCCAACTCGGCCTCGGTCTCGTCTTGATTCATTTCTGGGCGCCGTCGT
TCAAATGGGGCATTTCCTTGGCAAACATCGCCGACTTCAACCGGCCAGCT
GAATTCATCTCCGTGCCGCAGCAACTTGATGGGACTCAGCGTTGTTCCAG
CACTCAAGGCTCGAGTGATGGCCGTGGAATTTGTGAAAAACAACCCGCGG
ATCAAGGCGATGCTAGACCACCCCGCTGGACCGTTTACGACGGTGACTGC
CACGGGCATTATCTGGTCACGGTACAGCTTCGTCATCACCCCTGTCAACT
ACAACCTCTTCAGTGTCAATGCCTTTATGGCCGTCACGGGCAGCTACCAG
CTTTGGCGTAAATTTACCACCCAAGCTACGCCCACTGCGCCTCCCAACTC
GGCCTCGGTCTCGTCTTGATTCATTTCTGGGCGCCGTCGTTCAAATGGGG
CATTTCCTTGGCAAACATCGCCGACTTCAACCGGCCAGCTGAATTCATCT
CCGTGCCGCAGCAACTTGATGGGACTCAGCGTTGTTCCAGCACTCAAGGC
TCGAGTGATGGCCGTGGAATTTGTGAAAAACAACCCGCGGATCAAGGCGA
TGCTAGACCACCCCGCTGGACCGTTTACGACGGTGACTGCCACGGGCATT
ATCTGGTCACGGTACAGCTTCGTCATCACCCCTGTCAACTACAACCTCTT
CAGTGTCAATGCCTTTATGGCCGTCACGGGCAGCTACCAGCTTTGGCGTA
AATTTACCACCCAAGCTACGCCCACTGCGCCTCCCAACTCGGCCTCGGTC
TCGTCTTGATTCATTTCTGGGCGCCGTCGTTCAAATGGGGCATTTCCTTG
GCAAACATCGCCGACTTCAACCGGCCAGCTGAATTCATCTCCGTGCCGCA
GCAACTTGATGGGACTCAGCGTTGTTCCAGCACTCAAGGCTCGAGTGATG
GCCGTGGAATTTGTGAAAAACAACCCGCGGATCAAGGCGATGCTAGACCA
CCCCGCTGGACCGTTTACGA
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Synonyms
Publications