jgi.p|Nanoce1779_2|586186, mRNA_4027 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586186
Unique Name	mRNA_4027
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1281
Alignment location	scaffold_8:667051..668514 +

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Properties


Property Name	Value
TranscriptId	586272
Track	FilteredModels2
ProteinId	586186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:667051..668514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586186	gene_4027	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586186	mRNA_4027-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4027	CDS_4027	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:667051..668514+
coding sequence from alignment at scaffold_8:667051..668514+

mRNA sequence

>mRNA_4027 ID=mRNA_4027|Name=jgi.p|Nanoce1779_2|586186|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ATCATTTTCGTAGGCTTACATCTTGGAGAAGCTAGGAAGGAAGAGAAAAA
CAAACAGGGAACAAACAACTATTGAAATACAAAGATTTTTGGCCATTTAT
TCACGCGCTTTTTAACGTAGTCGTGATGAAGTTGGATGACGCATGAGGTA
TATAACTACTCTTTCCGAGTCGTTGATTACGCCTTAGACACGGACGCTCT
TACAAACGTAGATTCATTCTTGAGCTGCTACACACAGGTCTAGGCGCGAG
GGACTGGGTGCAAGAGACCAGAAAAAAAGGAGAAGCAGCTCGCAACAGCT
CGACTCTTGACTGTCGGAGCCCGGACCACCTCTTTACCACAACCACAGCC
AAATTGAGGATGCCATTTCCGCCCTTACAACGTTTCTGGGCCTCGGTAGC
CACACTCTGGGCGCTATTTGGGCTCGCACTTTCACCGGCCCTTTCAAATG
CCTATGTTCTCCCATCATGCTGCCTCAGCCGGCAGCGGTTTCTATTCATG
AATGCGGGGCACAGGACAGGAGGCGTGAAGCCTTTATCCCAGTCTTCTTC
AGCATGGTACAGTCGTGCTGACGTGTTTCGAGGAGGGCTTGTACTCTTGC
CAGGTGCCATGTTAACATGCTTAGCTCCATGGGGAGTCCGACCTGTCTCA
GCCGCCGAGGAGGAAAAGGAAAAGGTGGAATCCTCCACCTTCATTCCTTT
TGTCGCCTCCAGCAAGACCTTCACATTTGACTACCCCGACTCTTGGAAGC
TGGCCCCCAAACTTGTGCAGACACATCAAGAAGAGGTGACACTCAAAAGC
ACAGTCCAACGAGGCTTCTCCGCGGGAGTAGCGGTGGACCCCGTCCGGAT
CGAGCGGATCGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTG
TGAACCTGGAAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGAC
AGTGCGCAAGAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGAC
GCGGGGCAAGAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGC
TGGTTGTCTTCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAG
GCGATAATTACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGA
GGCTAGGTGACGAATTAACCAGGCTTCAAGGGGAGCAGACATTAAGGGTA
AGGGAGCATGTATTATTTATTAGCCTTTAGAACAGGCTTAAATCAAAAGA
AAGAAATAAGCTACGTCCGAGACGCAATTGA

protein sequence of jgi.p|Nanoce1779_2|586186

>mRNA_4027-protein ID=mRNA_4027-protein|Name=jgi.p|Nanoce1779_2|586186|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MPFPPLQRFWASVATLWALFGLALSPALSNAYVLPSCCLSRQRFLFMNAG
HRTGGVKPLSQSSSAWYSRADVFRGGLVLLPGAMLTCLAPWGVRPVSAAE
EEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQ
RGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQ
EGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAII
TQMLASFQAPPPAEAR*

mRNA from alignment at scaffold_8:667051..668514+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4027 ID=mRNA_4027|Name=jgi.p|Nanoce1779_2|586186|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at scaffold_8:667051..668514+ (Nannochloropsis oceanica)
ATCATTTTCGTAGGCTTACATCTTGGAGAAGCTAGGAAGGAAGAGAAAAA
CAAACAGGGAACAAACAACTATTGAAATACAAAGATTTTTGGCCATTTAT
TCACGCGCTTTTTAACGTAGTCGTGATGAAGTTGGATGACGCATGAGGTA
TATAACTACTCTTTCCGAGTCGTTGATTACGCCTTAGACACGGACGCTCT
TACAAACGTAGATTCATTCTTGAGCTGCTACACACAGGTCTAGGCGCGAG
GGACTGGGTGCAAGAGACCAGAAAAAAAGGAGAAGCAGCTCGCAACAGCT
CGACTCTTGACTGTCGGAGCCCGGACCACCTCTTTACCACAACCACAGCC
AAATTGAGGATGCCATTTCCGCCCTTACAACGTTTCTGGGCCTCGGTAGC
CACACTCTGGGCGCTATTTGGGCTCGCACTTTCACCGGCCCTTTCAAATG
CCTATGTTCTCCCATCATGCTGCCTCAGCCGGCAGCGGTTTCTATTCATG
AATGCGGGGCACAGGACAGGAGGCGTGAAGCCTTTATCCCAGTCTTCTTC
AGCATGGTACAGTCGTGCTGACGTGTTTCGAGGAGGGCTTGTACTCTTGC
CAGGTGCCATGTTAACATGCTTAGCTCCATGGGGAGTCCGACCTGTCTCA
GCCGCCGAGGAGGAAAAGGAAAAGGTGGAATCCTCCACCTTCATTCCTTT
TGTCGCCTCCAGCAAGACCTTCACATTTGACTACCCCGACTCTTGGAAGC
TGGCCCCCAAACTTGTGCAGACACATCAAGAAGAGGTAAGAGGATGTGTG
GTCATAATGGCCAGTCAATGAGGTGACCGAGGGTAAACGCATTTGCCCCC
TGCCATACGCTTCCAATAGGTGACACTCAAAAGCACAGTCCAACGAGGCT
TCTCCGCGGGAGTAGCGGTAAGTAGGAAGAGGGAAGAGTGGAAATAAAAT
GAGAAATGCAAGGCGATGGGGGCAGGAAAAGAATATCCCACTTGGTTCCC
CTAACTCGGTTCATAGGTGGACCCCGTCCGGATCGAGCGGATCGAGCAAA
CTGGCACGCCTGCCCAAGTCGGTGGTCGCATTGTGAACCTGGAAGGGAAG
AAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGACAGTGCGCAAGAGGGCAA
CTATTACACGTTCGACTACAGGGTGGAGTCGACGCGGGGCAAGAATCGCT
TCCTGGCCAAGGCCATTATCTATGCCCAGAAGCTGGTTGTCTTCACCGTG
CAGGTCCCCATCCCCGCCTATGAGTCTAATGAGGCGATAATTACACAAAT
GCTTGCCTCTTTTCAAGCACCACCACCGGCCGAGGCTAGGTGACGAATTA
ACCAGGCTTCAAGGGGAGCAGACATTAAGGGTAAGGGAGCATGTATTATT
TATTAGCCTTTAGAACAGGCTTAAATCAAAAGAAAGAAATAAGCTACGTC
CGAGACGCAATTGA

Coding sequence (CDS) from alignment at scaffold_8:667051..668514+

>mRNA_4027 ID=mRNA_4027|Name=jgi.p|Nanoce1779_2|586186|organism=Nannochloropsis oceanica|type=CDS|length=2403bp|location=Sequence derived from alignment at scaffold_8:667051..668514+ (Nannochloropsis oceanica)
ATGCCATTTCCGCCCTTACAACGTTTCTGGGCCTCGGTAGCCACACTCTG
GGCGCTATTTGGGCTCGCACTTTCACCGGCCCTTTCAAATGCCTATGTTC
TCCCATCATGCTGCCTCAGCCGGCAGCGGTTTCTATTCATGAATGCGGGG
CACAGGACAGGAGGCGTGAAGCCTTTATCCCAGTCTTCTTCAGCATGGTA
CAGTCGTGCTGACGTGTTTCGAGGAGGGCTTGTACTCTTGCCAGGTGCCA
TGTTAACATGCTTAGCTCCATGGGGAGTCCGACCTGTCTCAGCCGCCGAG
GAGGAAAAGGAAAAGGTGGAATCCTCCACCTTCATTCCTTTTGTCGCCTC
CAGCAAGACCTTCACATTTGACTACCCCGACTCTTGGAAGCTGGCCCCCA
AACTTGTGCAGACACATCAAGAAGAGGTGACACTCAAAAGCACAGTCCAA
CGAGGCTTCTCCGCGGGAGTAGCGGTGGACCCCGTCCGGATCGAGCGGAT
CGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTGTGAACCTGG
AAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGACAGTGCGCAA
GAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGACGCGGGGCAA
GAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGCTGGTTGTCT
TCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAGGCGATAATT
ACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGAGGCTAGGTG
AATGCCATTTCCGCCCTTACAACGTTTCTGGGCCTCGGTAGCCACACTCT
GGGCGCTATTTGGGCTCGCACTTTCACCGGCCCTTTCAAATGCCTATGTT
CTCCCATCATGCTGCCTCAGCCGGCAGCGGTTTCTATTCATGAATGCGGG
GCACAGGACAGGAGGCGTGAAGCCTTTATCCCAGTCTTCTTCAGCATGGT
ACAGTCGTGCTGACGTGTTTCGAGGAGGGCTTGTACTCTTGCCAGGTGCC
ATGTTAACATGCTTAGCTCCATGGGGAGTCCGACCTGTCTCAGCCGCCGA
GGAGGAAAAGGAAAAGGTGGAATCCTCCACCTTCATTCCTTTTGTCGCCT
CCAGCAAGACCTTCACATTTGACTACCCCGACTCTTGGAAGCTGGCCCCC
AAACTTGTGCAGACACATCAAGAAGAGGTGACACTCAAAAGCACAGTCCA
ACGAGGCTTCTCCGCGGGAGTAGCGGTGGACCCCGTCCGGATCGAGCGGA
TCGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTGTGAACCTG
GAAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGACAGTGCGCA
AGAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGACGCGGGGCA
AGAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGCTGGTTGTC
TTCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAGGCGATAAT
TACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGAGGCTAGGT
GAATGCCATTTCCGCCCTTACAACGTTTCTGGGCCTCGGTAGCCACACTC
TGGGCGCTATTTGGGCTCGCACTTTCACCGGCCCTTTCAAATGCCTATGT
TCTCCCATCATGCTGCCTCAGCCGGCAGCGGTTTCTATTCATGAATGCGG
GGCACAGGACAGGAGGCGTGAAGCCTTTATCCCAGTCTTCTTCAGCATGG
TACAGTCGTGCTGACGTGTTTCGAGGAGGGCTTGTACTCTTGCCAGGTGC
CATGTTAACATGCTTAGCTCCATGGGGAGTCCGACCTGTCTCAGCCGCCG
AGGAGGAAAAGGAAAAGGTGGAATCCTCCACCTTCATTCCTTTTGTCGCC
TCCAGCAAGACCTTCACATTTGACTACCCCGACTCTTGGAAGCTGGCCCC
CAAACTTGTGCAGACACATCAAGAAGAGGTGACACTCAAAAGCACAGTCC
AACGAGGCTTCTCCGCGGGAGTAGCGGTGGACCCCGTCCGGATCGAGCGG
ATCGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTGTGAACCT
GGAAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGACAGTGCGC
AAGAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGACGCGGGGC
AAGAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGCTGGTTGT
CTTCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAGGCGATAA
TTACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGAGGCTAGG
TGA

Synonyms

Publications