jgi.p|Nanoce1779_2|586185, mRNA_4026 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586185
Unique Name	mRNA_4026
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1582
Alignment location	scaffold_8:665552..667133 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586271
Track	FilteredModels2
ProteinId	586185

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:665552..667133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586185	gene_4026	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586185	mRNA_4026-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4026	CDS_4026	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:665552..667133+
coding sequence from alignment at scaffold_8:665552..667133+

mRNA sequence

>mRNA_4026 ID=mRNA_4026|Name=jgi.p|Nanoce1779_2|586185|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
ACAGACCACCCCTCCTCTCCAGTCGCTACCCTTCTCAGCAAAGATGCAGA
CCCCCATCAGCAACGTGCACGCTAAAATGATGGCGTTATCCGAAAAGAAG
GCTAAGACCTGGAACGACGTGGCCATCGACTGGATGGCGGGCGGTATCGC
GGCCGGTGTCTCTAAGACAGCTGTGGCTCCCATTGAGCGTGTCAAGCTCC
TCCTCCAGACACAGGATGCCAATCCCAAGATCGCCTCCGGGGAGGTTCCC
CGTTACTCCGGCGTGGTGAACGTGCTGGTGCGCGTGTCCAAGGAGCAAGG
GGTTCCCGCCTTGTGGCGTGGTAACGCCGCCAATGTGCTGCGCTACTTTC
CCACTCAGGCCTTTAACTTCGCGTTCAAGGACACTTTCAAGTCAATGTTC
CCCAAGTACGACCCCCAGACACAGTTCTGGGCCTTCTTCGGCTCCAACAT
GGCAGCAGGAGGCTTAGCGGGTGCTGCTTCCCTCCTCATTGTGTACCCCT
TGGACTTTGCGCGCACGCGTCTGGCCGCTGATCTGGGTAAGGACGGCGCC
CGTGAGTTCAACGGTTTGGTGGACTGCCTGAAGAAGGTAGTGAAGACCGG
CGGTCCCATGGCCTTGTATCAGGGCTTCGGTGTTTCCGTGCAGGGCATTA
TCGTGTACCGTGGTGCCTACTTTGGTTTGTACGACACTGCCAAGGGCGCA
CTTTTCAAGGACGAAGCCAGCTCAGGCATTCTCTACCGATGGGCGATCGC
CCAGGCCGTGACGGCCGCGGCCGGCATCGTCTCCTACCCCCTTGACACCA
TCCGTCGACGACTCATGATGCAGGCGGGCGGCAAGAAACTTTACAACGGC
ACCATGGATTGCGTGAGCAAGATCATTCAGAACGAGGGACCTAAGGCCTT
CTTTAAGGGTGCGTGGTCCAACGTGCTGCGCGGGGCGGGCGGCGCTTTGG
TCCTGGTCTTTTACGACGAGATCAAGAAGGCGCTGGGTGCCTCGTCTGGC
AGCAGCTCCGAGTAAGGCTTCACTATGCCAGGACCTAGGGGACACGCACA
CTCATATATGTTCTCAGATCACCTCACTGTCACATCATCGTCATCTCATC
ATCAACCCGTCACCGTTTTTATAAAACCTTACGAGGACAGTAGAATAATT
GTTTTGGCCGAAAAAGGGCACATGTGGGAGGGAAGAAAGAGAATGAGGCG
AGGGGTTAGACGGGCGTGTCAGGGAAACGGATGGGTGTCGTTCACGTTTT
TGAAGAGAAGAAAGAAAGAGTAGAGTTCGGGGACTTTTTGTACCCTTTTT
TGTGTCTGTGTGCTTGTGTGCTTGTGTATGTGAAGTCGAATGTTTGTATT
GGTGACCCTACCGAGACACCGGGATTTCAGAGGAGAACCATTTTTACGGG
GGGGCAGTTTTTACAAAGCATTCCACCCTCCCACCCGTCCGAGCCGTAGG
GGTTGGCCTCTTACATCTGCAGGTGCATCCGTGGGGGGAATAACGTTTCA
TCATTTTCGTAGGCTTACATCTTGGAGAAGCTAGGAAGGAAGAGAAAAAC
AAACAGGGAACAAACAACTATTGAAATACAAA

protein sequence of jgi.p|Nanoce1779_2|586185

>mRNA_4026-protein ID=mRNA_4026-protein|Name=jgi.p|Nanoce1779_2|586185|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MQTPISNVHAKMMALSEKKAKTWNDVAIDWMAGGIAAGVSKTAVAPIERV
KLLLQTQDANPKIASGEVPRYSGVVNVLVRVSKEQGVPALWRGNAANVLR
YFPTQAFNFAFKDTFKSMFPKYDPQTQFWAFFGSNMAAGGLAGAASLLIV
YPLDFARTRLAADLGKDGAREFNGLVDCLKKVVKTGGPMALYQGFGVSVQ
GIIVYRGAYFGLYDTAKGALFKDEASSGILYRWAIAQAVTAAAGIVSYPL
DTIRRRLMMQAGGKKLYNGTMDCVSKIIQNEGPKAFFKGAWSNVLRGAGG
ALVLVFYDEIKKALGASSGSSSE*

mRNA from alignment at scaffold_8:665552..667133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4026 ID=mRNA_4026|Name=jgi.p|Nanoce1779_2|586185|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_8:665552..667133+ (Nannochloropsis oceanica)
ACAGACCACCCCTCCTCTCCAGTCGCTACCCTTCTCAGCAAAGATGCAGA
CCCCCATCAGCAACGTGCACGCTAAAATGATGGCGTTATCCGAAAAGAAG
GCTAAGACCTGGAACGACGTGGCCATCGACTGGATGGCGGGCGGTATCGC
GGCCGGTGTCTCTAAGACAGCTGTGGCTCCCATTGAGCGTGTCAAGCTCC
TCCTCCAGACACAGGATGCCAATCCCAAGATCGCCTCCGGGGAGGTTCCC
CGTTACTCCGGCGTGGTGAACGTGCTGGTGCGCGTGTCCAAGGAGCAAGG
GGTTCCCGCCTTGTGGCGTGGTAACGCCGCCAATGTGCTGCGCTACTTTC
CCACTCAGGCCTTTAACTTCGCGTTCAAGGACACTTTCAAGTCAATGTTC
CCCAAGTACGACCCCCAGACACAGTTCTGGGCCTTCTTCGGCTCCAACAT
GGCAGCAGGAGGCTTAGCGGGTGCTGCTTCCCTCCTCATTGTGTACCCCT
TGGACTTTGCGCGCACGCGTCTGGCCGCTGATCTGGGTAAGGACGGCGCC
CGTGAGTTCAACGGTTTGGTGGACTGCCTGAAGAAGGTAGTGAAGACCGG
CGGTCCCATGGCCTTGTATCAGGGCTTCGGTGTTTCCGTGCAGGGCATTA
TCGTGTACCGTGGTGCCTACTTTGGTTTGTACGACACTGCCAAGGGCGCA
CTTTTCAAGGACGAAGCCAGCTCAGGCATTCTCTACCGATGGGCGATCGC
CCAGGCCGTGACGGCCGCGGCCGGCATCGTCTCCTACCCCCTTGACACCA
TCCGTCGACGACTCATGATGCAGGCGGGCGGCAAGAAACTTTACAACGGC
ACCATGGATTGCGTGAGCAAGATCATTCAGAACGAGGGACCTAAGGCCTT
CTTTAAGGGTGCGTGGTCCAACGTGCTGCGCGGGGCGGGCGGCGCTTTGG
TCCTGGTCTTTTACGACGAGATCAAGAAGGCGCTGGGTGCCTCGTCTGGC
AGCAGCTCCGAGTAAGGCTTCACTATGCCAGGACCTAGGGGACACGCACA
CTCATATATGTTCTCAGATCACCTCACTGTCACATCATCGTCATCTCATC
ATCAACCCGTCACCGTTTTTATAAAACCTTACGAGGACAGTAGAATAATT
GTTTTGGCCGAAAAAGGGCACATGTGGGAGGGAAGAAAGAGAATGAGGCG
AGGGGTTAGACGGGCGTGTCAGGGAAACGGATGGGTGTCGTTCACGTTTT
TGAAGAGAAGAAAGAAAGAGTAGAGTTCGGGGACTTTTTGTACCCTTTTT
TGTGTCTGTGTGCTTGTGTGCTTGTGTATGTGAAGTCGAATGTTTGTATT
GGTGACCCTACCGAGACACCGGGATTTCAGAGGAGAACCATTTTTACGGG
GGGGCAGTTTTTACAAAGCATTCCACCCTCCCACCCGTCCGAGCCGTAGG
GGTTGGCCTCTTACATCTGCAGGTGCATCCGTGGGGGGAATAACGTTTCA
TCATTTTCGTAGGCTTACATCTTGGAGAAGCTAGGAAGGAAGAGAAAAAC
AAACAGGGAACAAACAACTATTGAAATACAAA

Coding sequence (CDS) from alignment at scaffold_8:665552..667133+

>mRNA_4026 ID=mRNA_4026|Name=jgi.p|Nanoce1779_2|586185|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_8:665552..667133+ (Nannochloropsis oceanica)
ATGCAGACCCCCATCAGCAACGTGCACGCTAAAATGATGGCGTTATCCGA
AAAGAAGGCTAAGACCTGGAACGACGTGGCCATCGACTGGATGGCGGGCG
GTATCGCGGCCGGTGTCTCTAAGACAGCTGTGGCTCCCATTGAGCGTGTC
AAGCTCCTCCTCCAGACACAGGATGCCAATCCCAAGATCGCCTCCGGGGA
GGTTCCCCGTTACTCCGGCGTGGTGAACGTGCTGGTGCGCGTGTCCAAGG
AGCAAGGGGTTCCCGCCTTGTGGCGTGGTAACGCCGCCAATGTGCTGCGC
TACTTTCCCACTCAGGCCTTTAACTTCGCGTTCAAGGACACTTTCAAGTC
AATGTTCCCCAAGTACGACCCCCAGACACAGTTCTGGGCCTTCTTCGGCT
CCAACATGGCAGCAGGAGGCTTAGCGGGTGCTGCTTCCCTCCTCATTGTG
TACCCCTTGGACTTTGCGCGCACGCGTCTGGCCGCTGATCTGGGTAAGGA
CGGCGCCCGTGAGTTCAACGGTTTGGTGGACTGCCTGAAGAAGGTAGTGA
AGACCGGCGGTCCCATGGCCTTGTATCAGGGCTTCGGTGTTTCCGTGCAG
GGCATTATCGTGTACCGTGGTGCCTACTTTGGTTTGTACGACACTGCCAA
GGGCGCACTTTTCAAGGACGAAGCCAGCTCAGGCATTCTCTACCGATGGG
CGATCGCCCAGGCCGTGACGGCCGCGGCCGGCATCGTCTCCTACCCCCTT
GACACCATCCGTCGACGACTCATGATGCAGGCGGGCGGCAAGAAACTTTA
CAACGGCACCATGGATTGCGTGAGCAAGATCATTCAGAACGAGGGACCTA
AGGCCTTCTTTAAGGGTGCGTGGTCCAACGTGCTGCGCGGGGCGGGCGGC
GCTTTGGTCCTGGTCTTTTACGACGAGATCAAGAAGGCGCTGGGTGCCTC
GTCTGGCAGCAGCTCCGAGTAA

Synonyms

Publications