jgi.p|Nanoce1779_2|527291, mRNA_4025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527291
Unique NamemRNA_4025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1428
Alignment locationscaffold_8:662758..664401 -

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Properties
Property NameValue
TranscriptId527377
TrackFilteredModels2
ProteinId527291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:662758..664401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527291gene_4025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527291mRNA_4025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4025CDS_4025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4025 ID=mRNA_4025|Name=jgi.p|Nanoce1779_2|527291|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
ATGCAGAGCAAGGACAGCTCGAGCACCACCCCTCCTACACCTCTAGTATG
GTCCAACGTGTTGCGCGACAAGTTGCTCCTAGGTGTGGAGCCCTCGCCGG
ACGTGTACGCCATCCTTATCGTGTATTTTGTGCAAGGTGCCATCGGCTTG
GCCCGCCTTGCCACAACCTTCTACCTCAAGGACGACCTACACTTGTCCCC
TGCGGAGTCCGCCGCCCTCACAGGCATTTTTTCGACGCCTTGGCTGCTTA
AACCTCTTTACGGCTTTTTATCCGACGGGTTTCCTTTGGGCGGGTATCGT
CGTCGATCCTACTTAGCGCTCTCTGGTCTCTTAGGAGCACTTTCCTATTT
GGCTTTGGCCTCCCCCGGCGTAGTGGACTCAGTGGGCACGGCCACGGTCG
CCATCACGCTGGGCTCGCTCTCGGTGGCGGTCAGTGATGTGGTGGCCGAT
TCTCTCGTGGTAGAGAAGATTCAGGCAGCGGGCCCTGGGGGAGATCCCAA
GCTAGCGGGCGGCTTACAGTCCTTATGCTGGGGCAGCTCAGCCATGGGAG
GGATTACAAGTGCTTACTTCTCTGGGGTGTTGCTGGAAACGATCGGAACG
AGGGGTTTGTTTGGAATTACGGCCTCGTTACCCTTGTTGGTGACTTTAGT
TTCGCTGTCTATTCGGGAGACACGGCTGTCATTTGATTACAGCAGCTCTA
TCAGTCTGGCCAAGGAGCAAGCCATGCTCTTGCGGTTAGCCCTCACGCAG
AAATCAGTGTACCTTCCCCTCTTCTTTCTGGTCTTGTGGCAAGGCAGCCC
TTCCAGTGACTCGGCCTTCTTTTATTTCCTCACGAATGAGCTGCACATGC
AGCCCGAGTTCCTCGGCCGGGTGCGCTTAGGGACCAGCATCGCCTCCCTC
GCTGGGGTGTGGCTCTACCAGCGCTACCTGCGGGAGGTGCCGATTGCCAA
AATCCTCTTTTGGACCACGCTCGCTTCAGTACCGCTGGGGTTGACGCAAC
TTATCCTGGTGTACCACCTAAACACCGGTCTGGGGATCCCCAACGAGATC
TTCACCTTCGGCGACAGTGTAGTGCTGACTGTACTCGGCCAGATAGCCTT
CATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGCATTGAGG
GGACACTCTTTGCGACGTTGATGAGCGTGTTTAACGGTGCGGGGGCTTTG
GGCGCAGAGCTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCACCGAGAA
TAATTTTCAGAATTTGGGTCTGCTAATCGCCATTTGCAACCTCAGCACCC
TTTTGTCTCTACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAGCAAGAGT
GGCGAAGGGGGCGATGCACGAGGAGTTGAGCAGGAGGAACAGAAGATGGA
GGGACATGTCCACGAGACAAAAAATTAG
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protein sequence of jgi.p|Nanoce1779_2|527291

>mRNA_4025-protein ID=mRNA_4025-protein|Name=jgi.p|Nanoce1779_2|527291|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MQSKDSSSTTPPTPLVWSNVLRDKLLLGVEPSPDVYAILIVYFVQGAIGL
ARLATTFYLKDDLHLSPAESAALTGIFSTPWLLKPLYGFLSDGFPLGGYR
RRSYLALSGLLGALSYLALASPGVVDSVGTATVAITLGSLSVAVSDVVAD
SLVVEKIQAAGPGGDPKLAGGLQSLCWGSSAMGGITSAYFSGVLLETIGT
RGLFGITASLPLLVTLVSLSIRETRLSFDYSSSISLAKEQAMLLRLALTQ
KSVYLPLFFLVLWQGSPSSDSAFFYFLTNELHMQPEFLGRVRLGTSIASL
AGVWLYQRYLREVPIAKILFWTTLASVPLGLTQLILVYHLNTGLGIPNEI
FTFGDSVVLTVLGQIAFMPTLVLAARLCPPGIEGTLFATLMSVFNGAGAL
GAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKS
GEGGDARGVEQEEQKMEGHVHETKN*
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mRNA from alignment at scaffold_8:662758..664401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4025 ID=mRNA_4025|Name=jgi.p|Nanoce1779_2|527291|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_8:662758..664401- (Nannochloropsis oceanica)
ATGCAGAGCAAGGACAGCTCGAGCACCACCCCTCCTACACCTCTAGTATG
GTCCAACGTGTTGCGCGACAAGTTGCTCCTAGGTGTGGAGCCCTCGCCGG
ACGTGTACGCCATCCTTATCGTGTATTTTGTGCAAGGTGCCATCGGCTTG
GCCCGCCTTGCCACAACCTTCTACCTCAAGGACGACCTACACTTGTCCCC
TGCGGAGTCCGCCGCCCTCACAGGCATTTTTTCGACGCCTTGGCTGCTTA
AACCTCTTTACGGCTTTTTATCCGACGGGTTTCCTTTGGGCGGGTATCGT
CGTCGATCCTACTTAGCGCTCTCTGGTCTCTTAGGAGCACTTTCCTATTT
GGCTTTGGCCTCCCCCGGCGTAGTGGACTCAGTGGGCACGGCCACGGTCG
CCATCACGCTGGGCTCGCTCTCGGTGGCGGTCAGTGATGTGGTGGCCGAT
TCTCTCGTGGTAGAGAAGATTCAGGCAGCGGGCCCTGGGGGAGATCCCAA
GCTAGCGGGCGGCTTACAGTCCTTATGCTGGGGCAGCTCAGCCATGGGAG
GGATTACAAGTGCTTACTTCTCTGGGGTGTTGCTGGAAACGATCGGAACG
AGGGGTTTGTTTGGAATTACGGCCTCGTTACCCTTGTTGGTGACTTTAGT
TTCGCTGTCTATTCGGGAGACACGGCTGTCATTTGATTACAGCAGCTCTA
TCAGTCTGGCCAAGGAGCAAGCCATGCTCTTGCGGTTAGCCCTCACGCAG
AAATCAGTGTACCTTCCCCTCTTCTTTCTGGTCTTGTGGCAAGGCAGCCC
TTCCAGTGACTCGGCCTTCTTTTATTTCCTCACGAATGAGCTGCACATGC
AGCCCGAGTTCCTCGGCCGGGTGCGCTTAGGGACCAGCATCGCCTCCCTC
GCTGGGGTGTGGCTCTACCAGCGCTACCTGCGGGAGGTGCCGATTGCCAA
AATCCTCTTTTGGACCACGCTCGCTTCAGTACCGGTACGTTCACGGTGGA
TGGTCACTTGTTTCAAATGTGCTTACAAGTGTTTGCAGGCTTACAAATCA
GTGCGTGCTTCCTTACTTCTTCCCGGCTTATCCTAGCATGATATTTATTA
AACATTCTTCATTGGTTCTTTTCACGTGGGTAGTTTCAATTACAAATGAT
CACCCGAATCTCCTCCTTTTCTTTCGTCCTTATTTTTTTTGAAACCACAG
CTGGGGTTGACGCAACTTATCCTGGTGTACCACCTAAACACCGGTCTGGG
GATCCCCAACGAGATCTTCACCTTCGGCGACAGTGTAGTGCTGACTGTAC
TCGGCCAGATAGCCTTCATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGT
CCTCCAGGCATTGAGGGGACACTCTTTGCGACGTTGATGAGCGTGTTTAA
CGGTGCGGGGGCTTTGGGCGCAGAGCTGGGGGCATTTTTGACGTCCGCGC
TGGGTGTCACCGAGAATAATTTTCAGAATTTGGGTCTGCTAATCGCCATT
TGCAACCTCAGCACCCTTTTGTCTCTACCATTTTTGTCCTTGCTCCCAGC
GGAAAAAAGCAAGAGTGGCGAAGGGGGCGATGCACGAGGAGTTGAGCAGG
AGGAACAGAAGATGGAGGGACATGTCCACGAGACAAAAAATTAG
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Coding sequence (CDS) from alignment at scaffold_8:662758..664401-

>mRNA_4025 ID=mRNA_4025|Name=jgi.p|Nanoce1779_2|527291|organism=Nannochloropsis oceanica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_8:662758..664401- (Nannochloropsis oceanica)
CTGGGGTTGACGCAACTTATCCTGGTGTACCACCTAAACACCGGTCTGGG
GATCCCCAACGAGATCTTCACCTTCGGCGACAGTGTAGTGCTGACTGTAC
TCGGCCAGATAGCCTTCATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGT
CCTCCAGGCATTGAGGGGACACTCTTTGCGACGTTGATGAGCGTGTTTAA
CGGTGCGGGGGCTTTGGGCGCAGAGCTGGGGGCATTTTTGACGTCCGCGC
TGGGTGTCACCGAGAATAATTTTCAGAATTTGGGTCTGCTAATCGCCATT
TGCAACCTCAGCACCCTTTTGTCTCTACCATTTTTGTCCTTGCTCCCAGC
GGAAAAAAGCAAGAGTGGCGAAGGGGGCGATGCACGAGGAGTTGAGCAGG
AGGAACAGAAGATGGAGGGACATGTCCACGAGACAAAAAATTAGATGCAG
AGCAAGGACAGCTCGAGCACCACCCCTCCTACACCTCTAGTATGGTCCAA
CGTGTTGCGCGACAAGTTGCTCCTAGGTGTGGAGCCCTCGCCGGACGTGT
ACGCCATCCTTATCGTGTATTTTGTGCAAGGTGCCATCGGCTTGGCCCGC
CTTGCCACAACCTTCTACCTCAAGGACGACCTACACTTGTCCCCTGCGGA
GTCCGCCGCCCTCACAGGCATTTTTTCGACGCCTTGGCTGCTTAAACCTC
TTTACGGCTTTTTATCCGACGGGTTTCCTTTGGGCGGGTATCGTCGTCGA
TCCTACTTAGCGCTCTCTGGTCTCTTAGGAGCACTTTCCTATTTGGCTTT
GGCCTCCCCCGGCGTAGTGGACTCAGTGGGCACGGCCACGGTCGCCATCA
CGCTGGGCTCGCTCTCGGTGGCGGTCAGTGATGTGGTGGCCGATTCTCTC
GTGGTAGAGAAGATTCAGGCAGCGGGCCCTGGGGGAGATCCCAAGCTAGC
GGGCGGCTTACAGTCCTTATGCTGGGGCAGCTCAGCCATGGGAGGGATTA
CAAGTGCTTACTTCTCTGGGGTGTTGCTGGAAACGATCGGAACGAGGGGT
TTGTTTGGAATTACGGCCTCGTTACCCTTGTTGGTGACTTTAGTTTCGCT
GTCTATTCGGGAGACACGGCTGTCATTTGATTACAGCAGCTCTATCAGTC
TGGCCAAGGAGCAAGCCATGCTCTTGCGGTTAGCCCTCACGCAGAAATCA
GTGTACCTTCCCCTCTTCTTTCTGGTCTTGTGGCAAGGCAGCCCTTCCAG
TGACTCGGCCTTCTTTTATTTCCTCACGAATGAGCTGCACATGCAGCCCG
AGTTCCTCGGCCGGGTGCGCTTAGGGACCAGCATCGCCTCCCTCGCTGGG
GTGTGGCTCTACCAGCGCTACCTGCGGGAGGTGCCGATTGCCAAAATCCT
CTTTTGGACCACGCTCGCTTCAGTACCGCTGGGGTTGACGCAACTTATCC
TGGTGTACCACCTAAACACCGGTCTGGGGATCCCCAACGAGATCTTCACC
TTCGGCGACAGTGTAGTGCTGACTGTACTCGGCCAGATAGCCTTCATGCC
GACGCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGCATTGAGGGGACAC
TCTTTGCGACGTTGATGAGCGTGTTTAACGGTGCGGGGGCTTTGGGCGCA
GAGCTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCACCGAGAATAATTT
TCAGAATTTGGGTCTGCTAATCGCCATTTGCAACCTCAGCACCCTTTTGT
CTCTACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAGCAAGAGTGGCGAA
GGGGGCGATGCACGAGGAGTTGAGCAGGAGGAACAGAAGATGGAGGGACA
TGTCCACGAGACAAAAAATTAGATGCAGAGCAAGGACAGCTCGAGCACCA
CCCCTCCTACACCTCTAGTATGGTCCAACGTGTTGCGCGACAAGTTGCTC
CTAGGTGTGGAGCCCTCGCCGGACGTGTACGCCATCCTTATCGTGTATTT
TGTGCAAGGTGCCATCGGCTTGGCCCGCCTTGCCACAACCTTCTACCTCA
AGGACGACCTACACTTGTCCCCTGCGGAGTCCGCCGCCCTCACAGGCATT
TTTTCGACGCCTTGGCTGCTTAAACCTCTTTACGGCTTTTTATCCGACGG
GTTTCCTTTGGGCGGGTATCGTCGTCGATCCTACTTAGCGCTCTCTGGTC
TCTTAGGAGCACTTTCCTATTTGGCTTTGGCCTCCCCCGGCGTAGTGGAC
TCAGTGGGCACGGCCACGGTCGCCATCACGCTGGGCTCGCTCTCGGTGGC
GGTCAGTGATGTGGTGGCCGATTCTCTCGTGGTAGAGAAGATTCAGGCAG
CGGGCCCTGGGGGAGATCCCAAGCTAGCGGGCGGCTTACAGTCCTTATGC
TGGGGCAGCTCAGCCATGGGAGGGATTACAAGTGCTTACTTCTCTGGGGT
GTTGCTGGAAACGATCGGAACGAGGGGTTTGTTTGGAATTACGGCCTCGT
TACCCTTGTTGGTGACTTTAGTTTCGCTGTCTATTCGGGAGACACGGCTG
TCATTTGATTACAGCAGCTCTATCAGTCTGGCCAAGGAGCAAGCCATGCT
CTTGCGGTTAGCCCTCACGCAGAAATCAGTGTACCTTCCCCTCTTCTTTC
TGGTCTTGTGGCAAGGCAGCCCTTCCAGTGACTCGGCCTTCTTTTATTTC
CTCACGAATGAGCTGCACATGCAGCCCGAGTTCCTCGGCCGGGTGCGCTT
AGGGACCAGCATCGCCTCCCTCGCTGGGGTGTGGCTCTACCAGCGCTACC
TGCGGGAGGTGCCGATTGCCAAAATCCTCTTTTGGACCACGCTCGCTTCA
GTACCG
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Synonyms
Publications