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Properties
| Property Name | Value |
|---|
| TranscriptId | 586264 |
| Track | FilteredModels2 |
| ProteinId | 586178 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:656700..659916 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4023 ID=mRNA_4023|Name=jgi.p|Nanoce1779_2|586178|organism=Nannochloropsis oceanica|type=mRNA|length=2443bp
CTTAGAGCCTTCAAGAAAAGAAGCATGTCAGGGCACCAGCATCCACTTGT
CACAGTCTCTGCAGCTGGGGACGTTTAGACAACCCCCTCTCCTTGTTGCC
TCCATCTGTCCATACCGCGCCATTTCAACCACTGACGACCCACCACCAAT
TTCTACCAGACACAGACAATGTCGATTTCACGAAAGGAGATGCCGGCGCC
TCCTGCTGCTTCCTCAACGTTGCCGCCGTCTGCGTTTAAAGCCCATCCTC
CTTCACAGCAAGAAGGTCGGCCACGGGCGCTCTTCATAATAGCCCACCCT
GACGACGAGACCATGTTTTTTTCTCCAACGATTGCCCATTATCGGCGCCA
AGGCTCGGCTATGTCGGTGCTGTGCGTCTCTACCGGTGACTACTACGGAC
AAGGCTCTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGC
ATCCCTCCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGGATGG
CCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCGTCCGCGAGG
CCGTGACTCGCGACGATATCGACGAGGTCGTGACGTTTGACGTGGGCGGC
GTATCTGGCCATCCAAATCACGTAGCTCTCGCACGCGCGGTTAGCAGTCT
TGTCAGACAAGGAGGAGACGGAACCAGGTTGCCGCCTGCCGTAAAAGTTT
GGACATTGGAGACAACCAGTGTCATTCGAAAATACATTGGGCCTGCTGAC
ATCCTGGTGTCAATCTTTGCATGCCTGTGGGTAAGTCTGTGTGGATCACT
GGGTCGAAGAACGTGTGCAACGGATCATGGGGGGCGTAGGACCACCAGCA
GCACAACAGGTTTTCGTCTTTGCCTCAACGACAGCCCAGGCCTGACTTAC
AAGGCGATGCTGGCGCATGCGAGTCAGTTTGTATGGTACCGGCGTCTCTT
CATCATATTTTCCCGATACACCTACATAAATACGCTGCATGAGGAAGGCA
CTGGCGCAAATGGGAAGGGGGTGGGGGTCCAATTTGGACATGTGGAAGGC
ATAAGAGTTAAGAAAGCATAATTAATATTTGGAATAAGAGACTGTGCCCT
AGAATGCTTTTATCGCTGCCGACATCAAGATCTTGGTCGTCCAGGTTTGA
CTCGCGACACACAAGCGCTGCGAGCGTGCATGGGCCGGGAAAGGTGGCGC
GAGGTCTTTCTGTGGTCAGAGGCGAGCGGAGGCGAGGCACATGCATATGC
TTCTTCACATCCCTGATCACAACTCAAATTCTAATTGCCCTCAGAGCAAA
GTCTCTCTGGCGTATTGTCATGCTGCAGTTGCCAGCTTGGGCTCAACTCC
CCCTCTCCGTGTTTGTTCATCACGAATACACACACTCACACATACATGCA
CAGAGGGAAATAGCCTCCTCTCCCAGGCTAGAATGCCTGCTCATACACAT
GCCAGCATGCCAGCCACCACGGCCTACGCCTCTTCGGAGCCCTCCAGCCT
CTTGTCTATTGTAGATCGGACCGCCTATGACCGCCTTATCAAGTCTATCG
CAGACGATCTGCCCCAAGCGACGCAGCAAAAGTTCCGAGAGGAGGCCAAG
GAGTGCACAGATTACGCGAGGGCACGAAAGCTGATTGAGTTGGTGCTGGC
GCAAAGCGCTGTTATCATGGCCCGGCCAGTGGAGAAGGACATCGAGGGCT
CCTACCAGGTGCTGATCTCCTTGCTAGACCGACTGTCGGACCCGGCAGAC
CTTCCCGTCATGGTCGAGCGACTCGTGAGCAACCTCCGCTCCTCCGCAAA
CGAGAAACCCGGTCTTCGATTGAAGCTCCTCTCCAATTTCTACAACCTCC
TTAAGTCTGGCACACCCGAACGCTTCCAGGTCCTTTTGGCTATCATTGAA
TATGCACGCGACACCAAGCAGCTGGAGGTACTTTCGGACTTTTTCGCGAA
TCTTGAGGACTGGAAGAAGAATTGGCGGCACCTCTCAGAGAAGAACGAGC
GACAGCTCTACCTGCTAGTGTCGGACACTCTGGCGAGCGCCGGCAAGAAC
TCGGAGGCCCACCACTTCCTCATCAAGTACATTTCCACCTTCTCGGAGCA
AGACACCGACCTTGATCTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCG
TGATTGGAGCCGTCAAGCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTG
GGTTTGCCCGCGGTGAAGCGTTTGGCGGCTGACCCGGCACACAAAACCGT
GCATGAGTTGCTACAGGTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGG
AGTATGAGAGCAAGTACCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGC
GAGAAGGCCTTGCGGGACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGC
CGAGTACGAAGAGATCCCGTACTCGGCGGTATCGGCCACGTTG back to topprotein sequence of jgi.p|Nanoce1779_2|586178 >mRNA_4023-protein ID=mRNA_4023-protein|Name=jgi.p|Nanoce1779_2|586178|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSISRKEMPAPPAASSTLPPSAFKAHPPSQQEGRPRALFIIAHPDDETMF
FSPTIAHYRRQGSAMSVLCVSTGDYYGQGSVRGQELEEGCRLLGIPPQRL
TLLDDKDLQDGPDHGWPEPLLCSLVREAVTRDDIDEVVTFDVGGVSGHPN
HVALARAVSSLVRQGGDGTRLPPAVKVWTLETTSVIRKYIGPADILVSIF
ACLWVSLCGSLGRRTCATDHGGRRTTSSTTGFRLCLNDSPGLTYKAMLAH
ASQFVWYRRLFIIFSRYTYINTLHEEGTGANGKGVGVQFGHVEGIRVKKA
* back to topmRNA from alignment at scaffold_8:656700..659916- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4023 ID=mRNA_4023|Name=jgi.p|Nanoce1779_2|586178|organism=Nannochloropsis oceanica|type=mRNA|length=3217bp|location=Sequence derived from alignment at scaffold_8:656700..659916- (Nannochloropsis oceanica)
CTTAGAGCCTTCAAGAAAAGAAGCATGTCAGGGCACCAGCATCCACTTGT
CACAGTCTCTGCAGCTGGGGACGTTTAGACAACCCCCTCTCCTTGTTGCC
TCCATCTGTCCATACCGCGCCATTTCAACCACTGACGACCCACCACCAAT
TTCTACCAGACACAGACAATGTCGATTTCACGAAAGGAGATGCCGGCGCC
TCCTGCTGCTTCCTCAACGTTGCCGCCGTCTGCGTTTAAAGCCCATCCTC
CTTCACAGCAAGAAGGTCGGCCACGGGCGCTCTTCATAATAGCCCACCCT
GACGACGAGACCATGTTTTTTTCTCCAACGATTGCCCATTATCGGCGCCA
AGGCTCGGCTATGTCGGTGCTGTGCGTCTCTACCGGTAATGCAGGGAAGA
GGAGGTGGACTGTTCGTTGTGCATTGCTCATATCGTCTTATGCCGGCATT
TTACTCCCTCACCCGCATTCTGCGCCACAGGTGACTACTACGGACAAGGC
TCTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGCATCCC
TCCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGGTAAGTATGT
CGACTGCACACACTTGTGCCTTTCGACACAGTTGGTTCCAAGAGGGCAAG
AGAATTTGATTTTGTATGAGTTATGTCATCAATTTGACATACAATTTGAC
AGGATGGCCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCGTC
CGCGAGGCCGTGACTCGCGACGATATCGACGAGGTCAGTCCGGATAATAT
ACGCTTGTATGAGATTCTGCCAATTCATTTCGCTATCATACTCAATTAAA
AGTCACTTTCTCCCAAGCCCAGGTCGTGACGTTTGACGTGGGCGGCGTAT
CTGGCCATCCAAATCACGTAGCTCTCGCACGCGCGGTTAGCAGTCTTGTC
AGACAAGGAGGAGACGGAACCAGGTTGCCGCCTGCCGTAAAAGTTTGGAC
ATTGGAGACAACCAGTGTCATTCGAAAATACATTGGGCCTGCTGACATCC
TGGTGTCAATCTTTGCATGCCTGTGGGTAAGTCTGTGTGGATCACTGGGT
CGAAGAACGTGTGCAACGGATCATGGGGGGCGTAGGACCACCAGCAGCAC
AACAGGTTTTCGTCTTTGCCTCAACGACAGCCCAGGCCTGACTTACAAGG
CGATGCTGGCGCATGCGAGTCAGTTTGTATGGTACCGGCGTCTCTTCATC
ATATTTTCCCGATACACCTACATAAATACGCTGCATGAGGAAGGCACTGG
CGCAAATGGGAAGGGGGTGGGGGTCCAATTTGGACATGTGGAAGGCATAA
GAGTTAAGAAAGCATAATTAATATTTGGAATAAGAGACTGTGCCCTAGAA
TGCTTTTATCGCTGCCGACATCAAGATCTTGGTCGTCCAGGTTTGACTCG
CGACACACAAGCGCTGCGAGCGTGCATGGGCCGGGAAAGGTGGCGCGAGG
TCTTTCTGTGGTCAGAGGCGAGCGGAGGCGAGGCACATGCATATGCTTCT
TCACATCCCTGATCACAACTCAAATTCTAATTGCCCTCAGAGCAAAGTCT
CTCTGGCGTATTGTCATGCTGCAGTTGCCAGCTTGGGCTCAACTCCCCCT
CTCCGTGTTTGTTCATCACGAATACACACACTCACACATACATGCACAGA
GGGAAATAGCCTCCTCTCCCAGGCTAGAATGCCTGCTCATACACATGCCA
GCATGCCAGCCACCACGGCCTACGCCTCTTCGGAGCCCTCCAGCCTCTTG
TCTATTGTAGATCGGACCGCCTATGACCGCCTTATCAAGTCTATCGCAGA
CGATCTGCCCCAAGCGACGCAGCAAAAGTTCCGAGGTAGGGAAGGAGTCA
ATATGGACGATGATAGTAGATGAGAGCTGGATAGGCTAGGCTAAGCTGCA
TCCATGCTGCGTACACACATTTTGCCACCCACTCACACGTACACAAAAAG
AGGAGGCCAAGGAGTGCACAGATTACGCGAGGGCACGAAAGCTGATTGAG
TTGGTGCTGGCGCAAAGCGCTGTTATCATGGCCCGGCCAGTGGAGAAGGA
CATCGAGGGCTCCTACCAGGTAAGAAGACGGACGACTAAGCCCCTGCTTC
TACTCAAGTAAAGAGCGGAATGCGTTTACAGCTTCCCCCTGGATTATCAC
CTTACCATTGTCCTCGCATGTACACAGGTGCTGATCTCCTTGCTAGACCG
ACTGTCGGACCCGGCAGACCTTCCCGTCATGGTCGAGCGACTCGTGAGCA
ACCTCCGCTCCTCCGCAAACGAGAAACCCGGTCTTCGGTAAGACATTGTC
GATAACTTCTGCTCAATGTCAATTGCTTCTCATTTCTCCTTTCTCTGTTA
CTACGCATTTTCTTCCAACCCCATTTCGTCTTCCTCCTCATCCTCCCCTT
CACGTCTACAGATTGAAGCTCCTCTCCAATTTCTACAACCTCCTTAAGTC
TGGCACACCCGAACGCTTCCAGGTCCTTTTGGCTATCATTGAATATGCAC
GCGACACCAAGCAGGTGCGTTTGTGGTCGAGACAATGGGTGAAAGACTAG
AAGGATGTACACGGCCTCACAGAAAAATGCATGGTTCTTGCTTTTCTCTT
ACATTTTAACGCTTCATTCCTCTCGCATTTACTTCGCGCCCACAGCTGGA
GGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGAAGAAGAATTGGC
GGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTGCTAGTGTCGGAC
ACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCACTTCCTCATCAA
GTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTGATCTTTCCGAGA
CGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTCAAGCAGCCTTTG
ACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGTGAAGCGTTTGGC
GGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTACAGGTTTTCAGCT
TTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAGTACCCGGGCGTT
CTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCGGGACATGCGTCT
TCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGATCCCGTACTCGG
CGGTATCGGCCACGTTG back to topCoding sequence (CDS) from alignment at scaffold_8:656700..659916- >mRNA_4023 ID=mRNA_4023|Name=jgi.p|Nanoce1779_2|586178|organism=Nannochloropsis oceanica|type=CDS|length=3612bp|location=Sequence derived from alignment at scaffold_8:656700..659916- (Nannochloropsis oceanica)
GTCGTGACGTTTGACGTGGGCGGCGTATCTGGCCATCCAAATCACGTAGC
TCTCGCACGCGCGGTTAGCAGTCTTGTCAGACAAGGAGGAGACGGAACCA
GGTTGCCGCCTGCCGTAAAAGTTTGGACATTGGAGACAACCAGTGTCATT
CGAAAATACATTGGGCCTGCTGACATCCTGGTGTCAATCTTTGCATGCCT
GTGGGTAAGTCTGTGTGGATCACTGGGTCGAAGAACGTGTGCAACGGATC
ATGGGGGGCGTAGGACCACCAGCAGCACAACAGGTTTTCGTCTTTGCCTC
AACGACAGCCCAGGCCTGACTTACAAGGCGATGCTGGCGCATGCGAGTCA
GTTTGTATGGTACCGGCGTCTCTTCATCATATTTTCCCGATACACCTACA
TAAATACGCTGCATGAGGAAGGCACTGGCGCAAATGGGAAGGGGGTGGGG
GTCCAATTTGGACATGTGGAAGGCATAAGAGTTAAGAAAGCATAAGATGG
CCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCGTCCGCGAGG
CCGTGACTCGCGACGATATCGACGAGGTGACTACTACGGACAAGGCTCTG
TGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGCATCCCTCCA
CAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGATGTCGATTTCACG
AAAGGAGATGCCGGCGCCTCCTGCTGCTTCCTCAACGTTGCCGCCGTCTG
CGTTTAAAGCCCATCCTCCTTCACAGCAAGAAGGTCGGCCACGGGCGCTC
TTCATAATAGCCCACCCTGACGACGAGACCATGTTTTTTTCTCCAACGAT
TGCCCATTATCGGCGCCAAGGCTCGGCTATGTCGGTGCTGTGCGTCTCTA
CCGGTCGTGACGTTTGACGTGGGCGGCGTATCTGGCCATCCAAATCACGT
AGCTCTCGCACGCGCGGTTAGCAGTCTTGTCAGACAAGGAGGAGACGGAA
CCAGGTTGCCGCCTGCCGTAAAAGTTTGGACATTGGAGACAACCAGTGTC
ATTCGAAAATACATTGGGCCTGCTGACATCCTGGTGTCAATCTTTGCATG
CCTGTGGGTAAGTCTGTGTGGATCACTGGGTCGAAGAACGTGTGCAACGG
ATCATGGGGGGCGTAGGACCACCAGCAGCACAACAGGTTTTCGTCTTTGC
CTCAACGACAGCCCAGGCCTGACTTACAAGGCGATGCTGGCGCATGCGAG
TCAGTTTGTATGGTACCGGCGTCTCTTCATCATATTTTCCCGATACACCT
ACATAAATACGCTGCATGAGGAAGGCACTGGCGCAAATGGGAAGGGGGTG
GGGGTCCAATTTGGACATGTGGAAGGCATAAGAGTTAAGAAAGCATAAGA
TGGCCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCGTCCGCG
AGGCCGTGACTCGCGACGATATCGACGAGGTGACTACTACGGACAAGGCT
CTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGCATCCCT
CCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGATGTCGATTTC
ACGAAAGGAGATGCCGGCGCCTCCTGCTGCTTCCTCAACGTTGCCGCCGT
CTGCGTTTAAAGCCCATCCTCCTTCACAGCAAGAAGGTCGGCCACGGGCG
CTCTTCATAATAGCCCACCCTGACGACGAGACCATGTTTTTTTCTCCAAC
GATTGCCCATTATCGGCGCCAAGGCTCGGCTATGTCGGTGCTGTGCGTCT
CTACCGGTCGTGACGTTTGACGTGGGCGGCGTATCTGGCCATCCAAATCA
CGTAGCTCTCGCACGCGCGGTTAGCAGTCTTGTCAGACAAGGAGGAGACG
GAACCAGGTTGCCGCCTGCCGTAAAAGTTTGGACATTGGAGACAACCAGT
GTCATTCGAAAATACATTGGGCCTGCTGACATCCTGGTGTCAATCTTTGC
ATGCCTGTGGGTAAGTCTGTGTGGATCACTGGGTCGAAGAACGTGTGCAA
CGGATCATGGGGGGCGTAGGACCACCAGCAGCACAACAGGTTTTCGTCTT
TGCCTCAACGACAGCCCAGGCCTGACTTACAAGGCGATGCTGGCGCATGC
GAGTCAGTTTGTATGGTACCGGCGTCTCTTCATCATATTTTCCCGATACA
CCTACATAAATACGCTGCATGAGGAAGGCACTGGCGCAAATGGGAAGGGG
GTGGGGGTCCAATTTGGACATGTGGAAGGCATAAGAGTTAAGAAAGCATA
AGATGGCCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCGTCC
GCGAGGCCGTGACTCGCGACGATATCGACGAGGTGACTACTACGGACAAG
GCTCTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGCATC
CCTCCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGATGTCGAT
TTCACGAAAGGAGATGCCGGCGCCTCCTGCTGCTTCCTCAACGTTGCCGC
CGTCTGCGTTTAAAGCCCATCCTCCTTCACAGCAAGAAGGTCGGCCACGG
GCGCTCTTCATAATAGCCCACCCTGACGACGAGACCATGTTTTTTTCTCC
AACGATTGCCCATTATCGGCGCCAAGGCTCGGCTATGTCGGTGCTGTGCG
TCTCTACCGGTCGTGACGTTTGACGTGGGCGGCGTATCTGGCCATCCAAA
TCACGTAGCTCTCGCACGCGCGGTTAGCAGTCTTGTCAGACAAGGAGGAG
ACGGAACCAGGTTGCCGCCTGCCGTAAAAGTTTGGACATTGGAGACAACC
AGTGTCATTCGAAAATACATTGGGCCTGCTGACATCCTGGTGTCAATCTT
TGCATGCCTGTGGGTAAGTCTGTGTGGATCACTGGGTCGAAGAACGTGTG
CAACGGATCATGGGGGGCGTAGGACCACCAGCAGCACAACAGGTTTTCGT
CTTTGCCTCAACGACAGCCCAGGCCTGACTTACAAGGCGATGCTGGCGCA
TGCGAGTCAGTTTGTATGGTACCGGCGTCTCTTCATCATATTTTCCCGAT
ACACCTACATAAATACGCTGCATGAGGAAGGCACTGGCGCAAATGGGAAG
GGGGTGGGGGTCCAATTTGGACATGTGGAAGGCATAAGAGTTAAGAAAGC
ATAAGATGGCCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCG
TCCGCGAGGCCGTGACTCGCGACGATATCGACGAGGTGACTACTACGGAC
AAGGCTCTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGC
ATCCCTCCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGATGTC
GATTTCACGAAAGGAGATGCCGGCGCCTCCTGCTGCTTCCTCAACGTTGC
CGCCGTCTGCGTTTAAAGCCCATCCTCCTTCACAGCAAGAAGGTCGGCCA
CGGGCGCTCTTCATAATAGCCCACCCTGACGACGAGACCATGTTTTTTTC
TCCAACGATTGCCCATTATCGGCGCCAAGGCTCGGCTATGTCGGTGCTGT
GCGTCTCTACCG back to top
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