jgi.p|Nanoce1779_2|565237, mRNA_4022 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|565237
Unique Name	mRNA_4022
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1053
Alignment location	scaffold_8:656424..657839 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	565323
Track	FilteredModels2
ProteinId	565237

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:656424..657839 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565237	gene_4022	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565237	mRNA_4022-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4022	CDS_4022	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:656424..657839-
coding sequence from alignment at scaffold_8:656424..657839-

mRNA sequence

>mRNA_4022 ID=mRNA_4022|Name=jgi.p|Nanoce1779_2|565237|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
ATGGCCCGGCCAGTGGAGAAGGACATCGAGGGCTCCTACCAGGTGCTGAT
CTCCTTGCTAGACCGACTGTCGGACCCGGCAGACCTTCCCGTCATGGTCG
AGCGACTCGTGAGCAACCTCCGCTCCTCCGCAAACGAGAAACCCGGTCTT
CGATTGAAGCTCCTCTCCAATTTCTACAACCTCCTTAAGTCTGGCACACC
CGAACGCTTCCAGGTCCTTTTGGCTATCATTGAATATGCACGCGACACCA
AGCAGCTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGAAG
AAGAATTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTGCT
AGTGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCACT
TCCTCATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTGAT
CTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTCAA
GCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGTGA
AGCGTTTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTACAG
GTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAGTA
CCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCGGG
ACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGATC
CCGTACTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAGTGGA
GAGCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAAATGG
ACCAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCATTTC
TCCCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGCGTCA
GAACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCCGCTC
CCACCCACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTCTAAT
TAG

protein sequence of jgi.p|Nanoce1779_2|565237

>mRNA_4022-protein ID=mRNA_4022-protein|Name=jgi.p|Nanoce1779_2|565237|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGL
RLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWK
KNWRHLSEKNERQLYLLVSDTLASAGKNSEAHHFLIKYISTFSEQDTDLD
LSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQ
VFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAAEYEEI
PYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHF
SRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQALHHHHRGSSHSN
*

mRNA from alignment at scaffold_8:656424..657839-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4022 ID=mRNA_4022|Name=jgi.p|Nanoce1779_2|565237|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at scaffold_8:656424..657839- (Nannochloropsis oceanica)
ATGGCCCGGCCAGTGGAGAAGGACATCGAGGGCTCCTACCAGGTAAGAAG
ACGGACGACTAAGCCCCTGCTTCTACTCAAGTAAAGAGCGGAATGCGTTT
ACAGCTTCCCCCTGGATTATCACCTTACCATTGTCCTCGCATGTACACAG
GTGCTGATCTCCTTGCTAGACCGACTGTCGGACCCGGCAGACCTTCCCGT
CATGGTCGAGCGACTCGTGAGCAACCTCCGCTCCTCCGCAAACGAGAAAC
CCGGTCTTCGGTAAGACATTGTCGATAACTTCTGCTCAATGTCAATTGCT
TCTCATTTCTCCTTTCTCTGTTACTACGCATTTTCTTCCAACCCCATTTC
GTCTTCCTCCTCATCCTCCCCTTCACGTCTACAGATTGAAGCTCCTCTCC
AATTTCTACAACCTCCTTAAGTCTGGCACACCCGAACGCTTCCAGGTCCT
TTTGGCTATCATTGAATATGCACGCGACACCAAGCAGGTGCGTTTGTGGT
CGAGACAATGGGTGAAAGACTAGAAGGATGTACACGGCCTCACAGAAAAA
TGCATGGTTCTTGCTTTTCTCTTACATTTTAACGCTTCATTCCTCTCGCA
TTTACTTCGCGCCCACAGCTGGAGGTACTTTCGGACTTTTTCGCGAATCT
TGAGGACTGGAAGAAGAATTGGCGGCACCTCTCAGAGAAGAACGAGCGAC
AGCTCTACCTGCTAGTGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCG
GAGGCCCACCACTTCCTCATCAAGTACATTTCCACCTTCTCGGAGCAAGA
CACCGACCTTGATCTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGA
TTGGAGCCGTCAAGCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGT
TTGCCCGCGGTGAAGCGTTTGGCGGCTGACCCGGCACACAAAACCGTGCA
TGAGTTGCTACAGGTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGT
ATGAGAGCAAGTACCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAG
AAGGCCTTGCGGGACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGA
GTACGAAGAGATCCCGTACTCGGCGGTATCGGCCACGTTGCAAATCCCGC
ACGACGAAGTGGAGAGCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTG
GAGGCCAAAATGGACCAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTC
GCACCGGCATTTCTCCCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTC
ACTTGTGGCGTCAGAACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAG
AGGGTGCCCGCTCCCACCCACCAGGCACTGCACCATCATCACCGCGGCTC
CTCCCATTCTAATTAG

Coding sequence (CDS) from alignment at scaffold_8:656424..657839-

>mRNA_4022 ID=mRNA_4022|Name=jgi.p|Nanoce1779_2|565237|organism=Nannochloropsis oceanica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_8:656424..657839- (Nannochloropsis oceanica)
CTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGAAGAAGAA
TTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTGCTAGTGT
CGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCACTTCCTC
ATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTGATCTTTC
CGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTCAAGCAGC
CTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGTGAAGCGT
TTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTACAGGTTTT
CAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAGTACCCGG
GCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCGGGACATG
CGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGATCCCGTA
CTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAGTGGAGAGCT
GGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAAATGGACCAG
CAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCATTTCTCCCG
CCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGCGTCAGAACG
TCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCCGCTCCCACC
CACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTCTAATTAGAT
TGAAGCTCCTCTCCAATTTCTACAACCTCCTTAAGTCTGGCACACCCGAA
CGCTTCCAGGTCCTTTTGGCTATCATTGAATATGCACGCGACACCAAGCA
GGTGCTGATCTCCTTGCTAGACCGACTGTCGGACCCGGCAGACCTTCCCG
TCATGGTCGAGCGACTCGTGAGCAACCTCCGCTCCTCCGCAAACGAGAAA
CCCGGTCTTCGATGGCCCGGCCAGTGGAGAAGGACATCGAGGGCTCCTAC
CAGCTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGAAGAA
GAATTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTGCTAG
TGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCACTTC
CTCATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTGATCT
TTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTCAAGC
AGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGTGAAG
CGTTTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTACAGGT
TTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAGTACC
CGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCGGGAC
ATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGATCCC
GTACTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAGTGGAGA
GCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAAATGGAC
CAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCATTTCTC
CCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGCGTCAGA
ACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCCGCTCCC
ACCCACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTCTAATTA
GATTGAAGCTCCTCTCCAATTTCTACAACCTCCTTAAGTCTGGCACACCC
GAACGCTTCCAGGTCCTTTTGGCTATCATTGAATATGCACGCGACACCAA
GCAGGTGCTGATCTCCTTGCTAGACCGACTGTCGGACCCGGCAGACCTTC
CCGTCATGGTCGAGCGACTCGTGAGCAACCTCCGCTCCTCCGCAAACGAG
AAACCCGGTCTTCGATGGCCCGGCCAGTGGAGAAGGACATCGAGGGCTCC
TACCAGCTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGAA
GAAGAATTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTGC
TAGTGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCAC
TTCCTCATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTGA
TCTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTCA
AGCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGTG
AAGCGTTTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTACA
GGTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAGT
ACCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCGG
GACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGAT
CCCGTACTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAGTGG
AGAGCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAAATG
GACCAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCATTT
CTCCCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGCGTC
AGAACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCCGCT
CCCACCCACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTCTAA
TTAGATTGAAGCTCCTCTCCAATTTCTACAACCTCCTTAAGTCTGGCACA
CCCGAACGCTTCCAGGTCCTTTTGGCTATCATTGAATATGCACGCGACAC
CAAGCAGGTGCTGATCTCCTTGCTAGACCGACTGTCGGACCCGGCAGACC
TTCCCGTCATGGTCGAGCGACTCGTGAGCAACCTCCGCTCCTCCGCAAAC
GAGAAACCCGGTCTTCGATGGCCCGGCCAGTGGAGAAGGACATCGAGGGC
TCCTACCAGCTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTG
GAAGAAGAATTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACC
TGCTAGTGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCAC
CACTTCCTCATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCT
TGATCTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCG
TCAAGCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCG
GTGAAGCGTTTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCT
ACAGGTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCA
AGTACCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTG
CGGGACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGA
GATCCCGTACTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAG
TGGAGAGCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAA
ATGGACCAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCA
TTTCTCCCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGC
GTCAGAACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCC
GCTCCCACCCACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTC
TAATTAGATTGAAGCTCCTCTCCAATTTCTACAACCTCCTTAAGTCTGGC
ACACCCGAACGCTTCCAGGTCCTTTTGGCTATCATTGAATATGCACGCGA
CACCAAGCAGGTGCTGATCTCCTTGCTAGACCGACTGTCGGACCCGGCAG
ACCTTCCCGTCATGGTCGAGCGACTCGTGAGCAACCTCCGCTCCTCCGCA
AACGAGAAACCCGGTCTTCGATGGCCCGGCCAGTGGAGAAGGACATCGAG
GGCTCCTACCAG

Synonyms

Publications