jgi.p|Nanoce1779_2|586171, mRNA_4021 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586171
Unique Name	mRNA_4021
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1982
Alignment location	scaffold_8:653640..656167 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586257
Track	FilteredModels2
ProteinId	586171

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:653640..656167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586171	gene_4021	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586171	mRNA_4021-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4021	CDS_4021	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:653640..656167+
coding sequence from alignment at scaffold_8:653640..656167+

mRNA sequence

>mRNA_4021 ID=mRNA_4021|Name=jgi.p|Nanoce1779_2|586171|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp
GATGGCGTCAGGGGGTTGGTGCTCTGTTTAAGTTGTGAGAAAGAATAGAT
TAGGAGGGGTGTGAGCGGTATTCTACATTTGTAGAGATGCACGTGGCTTG
TGGTTCTGTACATGTCGCATACAACAAAATGGCCAACGCTGCAGCCCATT
CCTACGCTCCTGAGTGAGAAGTGAAACGACTTAACAGAACGCGGCGAAGC
AAAGCAAGGAAAATGACGAAATAAGAGGGAGGTGCTTGGACCCGGGCTCC
GTGGGAAGCTTGTTGTATTTCAGGGCTCTCGGGCAACCACCCACCACACC
ACACATTCACAACCGATGTATGGCCGGGTGGAGTGCAGGAACTTTGGCAT
TGCAACAGCGTTATCCTCCCTTGTCCAGCTCCCAATACCCCGACTCAAAT
TGGTTTTCTCATTTTACCTACAAACCACCATGCCTTGCGCTTATCACTCA
GACACCTGCACTAGACGAGCCTGTGCATATCTGTGACCCTTGCCGCTTTG
CTGTTTGGAGGCAGGACGCAGGGGAGGAGGGAGGAAGACAGACCGAGCGA
AACCTCCCCTTCCTCTATCACCTGATGCCTACCCACCGGCAATGAATTGC
GACAAGAAGAAGCCCTCGATATATCGTGCAGGGACACCATTTACCATTGA
GCACGCCGATGATCACATAGCGCGGACCTTCAAGACGTGACAGACTGCAC
TGTCACGGCAAGAAGACATCCGCCCCCTCCCAACGCGTCGAGGGACGCTA
TTGCACGAAATTCTCTGAAGTCTTCCCCAAGCCACCCACTGTCACACACT
TGTGCCCGCCCCGTTTCATTTCCTGATTTTTAAATTACGTCCATAATTCA
CAAACCACAGCCAGCCTCCGTCCCCGACCCATTTCAAGCAGCAAAAATGA
GTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGTCAGC
CAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGAGCGA
GCTTGTCAAAACCATGCTTCCCGATGACGATGACAACACCGACACGCAGG
AGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGATCGAG
TTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAGCCTCT
GAAGAGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAACTTCG
TGAACGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAACTAC
ATGGACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCAGCAT
GATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATCACAA
ACGACTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAAGTGG
TGCGAGGAGGTCTAAGCCCGAGGCATTAGGGAAGGAGGGAGGGAGGGATG
AAGTGAGAGGGGTGAAGGAGAAGGATCAGAAGTACCAGTAACAGCAGTCG
AGGAGCCGCACTAATGCTTGGCAGTCAACAAAGAGAGAGTAGTGGACATT
GCAAGGGGGCAATGGGAGATGGAGGGGCTGACGAAAGGCAAGGGCACAGA
ATGAGGAGAACATATGCAAGAGGTATTGTGGGCCCAAAGAGGGAGAAAGA
ATAATATGTCATCTAGGACCTAAGACGGACGAAAGATAGTGGATCCGCAG
ATTCTCTGTCTCTCTTTTTACTCTCCCAGTTTGCGTCTTGCTACGGACAT
GTTCCCACCGTTTATGAAAGAGATTGCGGACGGGGTGGGAGGGCGCAGGA
GGGAGAAGGAGACAGCGTGTTAGATTCATGGAAGTAGGATGTGGTATGTG
TTCATGTGCAGCGACAGCAGAACAGAAGAAAAGGATGAAGGAGGAGAAGA
AGACGAACAAGAAGAAGGAGAGAAATAAGAACAAGAAGCGTAACAAAAAA
AGGAGAGGAAGAGACGAGCCCTCTCTGTTGCG

protein sequence of jgi.p|Nanoce1779_2|586171

>mRNA_4021-protein ID=mRNA_4021-protein|Name=jgi.p|Nanoce1779_2|586171|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MSDEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDT
QEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYAN
FVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNI
TNDFTPEEEAQVREENKWCEEV*

mRNA from alignment at scaffold_8:653640..656167+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4021 ID=mRNA_4021|Name=jgi.p|Nanoce1779_2|586171|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp|location=Sequence derived from alignment at scaffold_8:653640..656167+ (Nannochloropsis oceanica)
GATGGCGTCAGGGGGTTGGTGCTCTGTTTAAGTTGTGAGAAAGAATAGAT
TAGGAGGGGTGTGAGCGGTATTCTACATTTGTAGAGATGCACGTGGCTTG
TGGTTCTGTACATGTCGCATACAACAAAATGGCCAACGCTGCAGCCCATT
CCTACGCTCCTGAGTGAGAAGTGAAACGACTTAACAGAACGCGGCGAAGC
AAAGCAAGGAAAATGACGAAATAAGAGGGAGGTGCTTGGACCCGGGCTCC
GTGGGAAGCTTGTTGTATTTCAGGGCTCTCGGGCAACCACCCACCACACC
ACACATTCACAACCGATGTATGGCCGGGTGGAGTGCAGGAACTTTGGCAT
TGCAACAGCGTTATCCTCCCTTGTCCAGCTCCCAATACCCCGACTCAAAT
TGGTTTTCTCATTTTACCTACAAACCACCATGCCTTGCGCTTATCACTCA
GACACCTGCACTAGACGAGCCTGTGCATATCTGTGACCCTTGCCGCTTTG
CTGTTTGGAGGCAGGACGCAGGGGAGGAGGGAGGAAGACAGACCGAGCGA
AACCTCCCCTTCCTCTATCACCTGATGCCTACCCACCGGCAATGAATTGC
GACAAGAAGAAGCCCTCGATATATCGTGCAGGGACACCATTTACCATTGA
GCACGCCGATGATCACATAGCGCGGACCTTCAAGACGTGACAGACTGCAC
TGTCACGGCAAGAAGACATCCGCCCCCTCCCAACGCGTCGAGGGACGCTA
TTGCACGAAATTCTCTGAAGTCTTCCCCAAGCCACCCACTGTCACACACT
TGTGCCCGCCCCGTTTCATTTCCTGATTTTTAAATTACGTCCATAATTCA
CAAACCACAGCCAGCCTCCGTCCCCGACCCATTTCAAGCAGCAAAAATGA
GTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGTCAGC
CAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGAGCGA
GCTTGTCAAAACCATGCTTCCCGATGGTATGGGCGAGGGGGGCAAGGGGC
GGGAGGGGCATGCACGCGGAAGGAGTACATACACGGAGAAAGTGGAGTAC
GAAAAGCGGAGGGCAAGGACATGGCCCACCGGAAAGAAAGAGCTTCTCCC
TCCCGTACTTCCCTGGGGGTGCAAATTAAATAACGGCCAAACGCTTCTAA
CCATCACCATTCCTCCCTTTTTTTCTTCGCACCGCATTAAACACCCCCGC
TCCCTCTTCACTTCCCTCCCCAAATAGACGATGACAACACCGACACGCAG
GAGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGATCGA
GTTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAGGTGA
GGTTCCTTATGGGTTTTGGGGAAAGGAGAAGGACATGTCTTGATATGCCC
GTCAATCGGTACCCAGAACCTGTGTCTGTGTGTGGTTGCTCGCTCTTTTA
TTATTTTTTGTTGTGTGCCCGTCCTAACAATTAAGTCTGTATAAATCTTA
CTCCCCTCTCCCTCTTCCTTATCGCCAAACACATCTTTATGCACTCCTCA
TATCCTTACCCTCCATCCCCCCCCCCTTATTTATCTGCTATCCCCTGCTC
TTACTCACTCATCCCTCTTTTGCCCTCCCCTCGTTCTACAGCCTCTGAAG
AGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAACTTCGTGAA
CGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAACTACATGG
ACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCAGCATGATC
AAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATCACAAACGA
CTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAAGTGGTGCG
AGGAGGTCTAAGCCCGAGGCATTAGGGAAGGAGGGAGGGAGGGATGAAGT
GAGAGGGGTGAAGGAGAAGGATCAGAAGTACCAGTAACAGCAGTCGAGGA
GCCGCACTAATGCTTGGCAGTCAACAAAGAGAGAGTAGTGGACATTGCAA
GGGGGCAATGGGAGATGGAGGGGCTGACGAAAGGCAAGGGCACAGAATGA
GGAGAACATATGCAAGAGGTATTGTGGGCCCAAAGAGGGAGAAAGAATAA
TATGTCATCTAGGACCTAAGACGGACGAAAGATAGTGGATCCGCAGATTC
TCTGTCTCTCTTTTTACTCTCCCAGTTTGCGTCTTGCTACGGACATGTTC
CCACCGTTTATGAAAGAGATTGCGGACGGGGTGGGAGGGCGCAGGAGGGA
GAAGGAGACAGCGTGTTAGATTCATGGAAGTAGGATGTGGTATGTGTTCA
TGTGCAGCGACAGCAGAACAGAAGAAAAGGATGAAGGAGGAGAAGAAGAC
GAACAAGAAGAAGGAGAGAAATAAGAACAAGAAGCGTAACAAAAAAAGGA
GAGGAAGAGACGAGCCCTCTCTGTTGCG

Coding sequence (CDS) from alignment at scaffold_8:653640..656167+

>mRNA_4021 ID=mRNA_4021|Name=jgi.p|Nanoce1779_2|586171|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_8:653640..656167+ (Nannochloropsis oceanica)
ATGAGTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGT
CAGCCAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGA
GCGAGCTTGTCAAAACCATGCTTCCCGATGACGATGACAACACCGACACG
CAGGAGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGAT
CGAGTTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAGC
CTCTGAAGAGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAAC
TTCGTGAACGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAA
CTACATGGACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCA
GCATGATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATC
ACAAACGACTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAA
GTGGTGCGAGGAGGTCTAAATGAGTGACGAAGCCAAGGGAACGGAGTCCG
GCAAGGTGGTGCACCTGGTCAGCCAGGAAGGCGACCAGTACGAGGTAGAA
GTGGCAGTCTGCAAGATGAGCGAGCTTGTCAAAACCATGCTTCCCGATGA
CGATGACAACACCGACACGCAGGAGATCCCGTTGCCCAACGTCAAGAACA
GCGTGCTGGCCAAAGTGATCGAGTTCTGTAAGCATCATAAGGATGATCCA
ATGAATGACATCGAAAAGCCTCTGAAGAGCGCGAACATGCACGAGGTGGT
GCAGGACTGGTATGCGAACTTCGTGAACGTGGACCAAGAGCTGCTATTCG
AGCTCATCCTCGCCGCCAACTACATGGACATAAAACCCTTGCTAGACCTG
ACCTGCGCCACAGTGGCCAGCATGATCAAGGGAAAGACGCCCGAGGAGAT
CCGTCGCACCTTCAACATCACAAACGACTTCACTCCCGAGGAGGAGGCGC
AGGTGCGTGAGGAGAACAAGTGGTGCGAGGAGGTCTAAATGAGTGACGAA
GCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGTCAGCCAGGAAGG
CGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGAGCGAGCTTGTCA
AAACCATGCTTCCCGATGACGATGACAACACCGACACGCAGGAGATCCCG
TTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGATCGAGTTCTGTAA
GCATCATAAGGATGATCCAATGAATGACATCGAAAAGCCTCTGAAGAGCG
CGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAACTTCGTGAACGTG
GACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAACTACATGGACAT
AAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCAGCATGATCAAGG
GAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATCACAAACGACTTC
ACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAAGTGGTGCGAGGA
GGTCTAA

Synonyms

Publications