jgi.p|Nanoce1779_2|421639, mRNA_4017 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|421639
Unique NamemRNA_4017
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length965
Alignment locationscaffold_8:642877..644670 -

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Properties
Property NameValue
TranscriptId421725
TrackFilteredModels2
ProteinId421639
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:642877..644670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|421639gene_4017Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|421639mRNA_4017-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4017CDS_4017Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4017 ID=mRNA_4017|Name=jgi.p|Nanoce1779_2|421639|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
TCCACTTCCTTGCCTTCATTTCACAGGCTTTATCTAGCAGTCCGGCGGGA
CGCTGACGATCACCAGGACGACCTAAGCACGATGACGATGACGATGCAAG
CAGGAAGGCGCCACGCCTCCCTTGTCGCCCTCGTCCTCGTCGGCCTGCGG
CTCACGACGACCGTTGCCTTCGTCTTCCCGTCGTCATCATTGTGTACGCC
ATTTCAAGTTCGCACACCAACGATGACGACCACCGCGTTGGCAGCCGTCA
AGCCCGAAGACCTTGTCATTGCACCGGGTGGGACCAACGATGACTTCACA
AATGAGCAGGAGTTGGACTATCTTGAGTGGCTGGTGCGCAAATACAAGAG
GAAGGGGCGGTTGGACGAGGCCCGTGAGCTCGAAGCAGACGTCCGGGCAC
GTCAGGAGTACGATGTGCGGGCCGTAACGCGACTGAATGATGTCTTCTAC
CAGGCCTTCACTGAGCAAGACCCCAAGGTCATGGCCGAGCTCTGGTTGCG
GGAGCCAGAGGTGTCGTGCATTCATCCGGGGGTGGCGGAGGTGGTGGTGG
GGTACGATCGGGTCATGCGTGTGTGGAAGGACATCTTGGCACCCAAGCGG
TCGTGGATTAAAATCACGCCGGAGGACTGCCGTGTGGTCGTGCGTGGGAA
TACGGCTTTCGCCTATTGTTTTGAGCGCGTAGTTCCCGATGCTGCGGGTT
CTAATCTAGAGCAGCGGCTGTTCGCCACGAATGTGTTCGTGCGGCGGCAG
GGCATGTGGTACATCGGTCACCACCACGCCACTCTCCTGAAGGCCCCCGC
CAGCGACAAACCTGCCCAAAACCAACAGCAGCAAAATGCGGCGCTCATGC
AGCAGCTGCAGCAGAGCCTGGGTTTAAACGGCAATAAGATAATCAATCTT
GGGCTCTAGTTAGGAAAATGTGGGCGAGATTTTGTACAGTGCAGTTAAAA
CAAGGAAGAAAGGAA
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protein sequence of jgi.p|Nanoce1779_2|421639

>mRNA_4017-protein ID=mRNA_4017-protein|Name=jgi.p|Nanoce1779_2|421639|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MTMTMQAGRRHASLVALVLVGLRLTTTVAFVFPSSSLCTPFQVRTPTMTT
TALAAVKPEDLVIAPGGTNDDFTNEQELDYLEWLVRKYKRKGRLDEAREL
EADVRARQEYDVRAVTRLNDVFYQAFTEQDPKVMAELWLREPEVSCIHPG
VAEVVVGYDRVMRVWKDILAPKRSWIKITPEDCRVVVRGNTAFAYCFERV
VPDAAGSNLEQRLFATNVFVRRQGMWYIGHHHATLLKAPASDKPAQNQQQ
QNAALMQQLQQSLGLNGNKIINLGL*
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mRNA from alignment at scaffold_8:642877..644670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4017 ID=mRNA_4017|Name=jgi.p|Nanoce1779_2|421639|organism=Nannochloropsis oceanica|type=mRNA|length=1794bp|location=Sequence derived from alignment at scaffold_8:642877..644670- (Nannochloropsis oceanica)
TCCACTTCCTTGCCTTCATTTCACAGGCTTTATCTAGCAGTCCGGCGGGA
CGCTGACGATCACCAGGACGACCTAAGCACGATGACGATGACGATGCAAG
CAGGAAGGCGCCACGCCTCCCTTGTCGCCCTCGTCCTCGTCGGCCTGCGG
CTCACGACGACCGTTGCCTTCGTCTTCCCGTCGTCATCATTGTGTACGCC
ATTTCAAGGTAGATTGCTGGGCTGGTCACCTGGGTTTGTAATTGGAAGGG
AAGGCGGCACTCGTTGTTGCACCACAATGACTCACCCCGGACTCGTTCTC
GATTTCTAACACCTAGTTCGCACACCAACGATGACGACCACCGCGTTGGC
AGCCGTCAAGCCCGAAGACCTTGTCATTGCACCGGGTGGGACCAACGATG
ACGTAAGTATGCGCATGGGGCATGTATCGGAGGGGTACAGGTGTGGGAAG
CGCATGTTGCTCAGCAGGAGCAGCTTTTCCTCTGACAACCAAATCAACGC
CCAACACCCAACACAGTTCACAAATGAGCAGGAGTTGGACTATCTTGAGT
GGCTGGTGCGCAAATACAAGAGGAAGGGGCGGTTGGACGAGGCCCGTGAG
CTCGAAGCAGACGTCCGGGCACGTCAGGAGTACGATGTGCGGGCCGTAAC
GCGACTGAATGATGTCTTCTACCAGGCCTTCACTGAGCAAGACCCCAAGG
TCATGGCCGAGCTCTGGTTGCGGGAGCCAGAGGTGTCGTGCATTCATCCG
GGGGTGGCGGAGGTGGTGGTGGGGTACGATCGGGTCATGCGTGTGTGGAA
GGACATCTTGGCACCCAAGCGGTCGTGGATTAAAATCACGCCGGAGGACT
GCCGTGTGGTCGTGCGTGGGAATACGGCTTTCGCCTATTGTTTTGAGCGC
GTAGTTCCCGATGCTGCGGGTTCTAATCTAGAGCAGCGGCTGTTCGCCAC
GAATGTGTTCGTGCGGCGGCAGGGCATGTGGTACATCGGTCACCACCACG
CCACTCTCCTGAAGGCCCCCGCCAGCGACAAACCTGCCCAAAACCAACAG
CAGCAAAATGCGGCGCTCATGCAGCAGCTGCAGCAGAGCCTGGGTTTAAA
CGGCAATAAGATAATCAATCTTGGTGGGCTGAAAGGGCAGAACGGAGCAG
GCGGGGGAGGTACGGGGGGCTCGATGGGCTCGTTGGACGATTTGGCCGCA
CAGCTGGGGGCACTAGAAAGGCAGCTGGGCGCGGGGGAGTCGCGGAAACC
GCGTGTGCGTATGCTGAAGGATGGGAAGTACCAGATTCTATCGGAGGATG
ACGATGAGGACGATGATGATGAGGATGATGAGGGGGTGCAAAGGGATAAG
GCTCTAACCCGGAAGACAGTGCGTGCGATTCAGCAATTGTTTAATGACGG
GCGCATCACTATCGAGCAGAAGCGTCGATTGCTCAACGAGATCATCCAGC
ACTCCAACCACGAAGTCCCCTCCATGGTCGAGATAGCGTACGAGCTCCTG
CTCCGCAATGATGAAGAGGTCGTCGCACCTCAAAGCGGTGGGAAAAGCTT
GCCGGCAGGGCAAAAAACTGGTGCATCTACGACCAATATTGCCGCCCCTG
CCGATGGGGATGCCTCTGCGGCGGCGACGAGCAGGGAGGAGGATATTTTG
AACGAGTTTCTGGAGCAATGTCGGATCATTGCGCAGGCGGGGGAGGAGGA
CGATGAGTAGGAGTGGGGTCAGGGTTGGAGGGCTCTAGTTAGGAAAATGT
GGGCGAGATTTTGTACAGTGCAGTTAAAACAAGGAAGAAAGGAA
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Coding sequence (CDS) from alignment at scaffold_8:642877..644670-

>mRNA_4017 ID=mRNA_4017|Name=jgi.p|Nanoce1779_2|421639|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_8:642877..644670- (Nannochloropsis oceanica)
GGCTCTAGTTCACAAATGAGCAGGAGTTGGACTATCTTGAGTGGCTGGTG
CGCAAATACAAGAGGAAGGGGCGGTTGGACGAGGCCCGTGAGCTCGAAGC
AGACGTCCGGGCACGTCAGGAGTACGATGTGCGGGCCGTAACGCGACTGA
ATGATGTCTTCTACCAGGCCTTCACTGAGCAAGACCCCAAGGTCATGGCC
GAGCTCTGGTTGCGGGAGCCAGAGGTGTCGTGCATTCATCCGGGGGTGGC
GGAGGTGGTGGTGGGGTACGATCGGGTCATGCGTGTGTGGAAGGACATCT
TGGCACCCAAGCGGTCGTGGATTAAAATCACGCCGGAGGACTGCCGTGTG
GTCGTGCGTGGGAATACGGCTTTCGCCTATTGTTTTGAGCGCGTAGTTCC
CGATGCTGCGGGTTCTAATCTAGAGCAGCGGCTGTTCGCCACGAATGTGT
TCGTGCGGCGGCAGGGCATGTGGTACATCGGTCACCACCACGCCACTCTC
CTGAAGGCCCCCGCCAGCGACAAACCTGCCCAAAACCAACAGCAGCAAAA
TGCGGCGCTCATGCAGCAGCTGCAGCAGAGCCTGGGTTTAAACGGCAATA
AGATAATCAATCTTGTTCGCACACCAACGATGACGACCACCGCGTTGGCA
GCCGTCAAGCCCGAAGACCTTGTCATTGCACCGGGTGGGACCAACGATGA
CATGACGATGACGATGCAAGCAGGAAGGCGCCACGCCTCCCTTGTCGCCC
TCGTCCTCGTCGGCCTGCGGCTCACGACGACCGTTGCCTTCGTCTTCCCG
TCGTCATCATTGTGTACGCCATTTCAAGGGCTCTAGTTCACAAATGAGCA
GGAGTTGGACTATCTTGAGTGGCTGGTGCGCAAATACAAGAGGAAGGGGC
GGTTGGACGAGGCCCGTGAGCTCGAAGCAGACGTCCGGGCACGTCAGGAG
TACGATGTGCGGGCCGTAACGCGACTGAATGATGTCTTCTACCAGGCCTT
CACTGAGCAAGACCCCAAGGTCATGGCCGAGCTCTGGTTGCGGGAGCCAG
AGGTGTCGTGCATTCATCCGGGGGTGGCGGAGGTGGTGGTGGGGTACGAT
CGGGTCATGCGTGTGTGGAAGGACATCTTGGCACCCAAGCGGTCGTGGAT
TAAAATCACGCCGGAGGACTGCCGTGTGGTCGTGCGTGGGAATACGGCTT
TCGCCTATTGTTTTGAGCGCGTAGTTCCCGATGCTGCGGGTTCTAATCTA
GAGCAGCGGCTGTTCGCCACGAATGTGTTCGTGCGGCGGCAGGGCATGTG
GTACATCGGTCACCACCACGCCACTCTCCTGAAGGCCCCCGCCAGCGACA
AACCTGCCCAAAACCAACAGCAGCAAAATGCGGCGCTCATGCAGCAGCTG
CAGCAGAGCCTGGGTTTAAACGGCAATAAGATAATCAATCTTGTTCGCAC
ACCAACGATGACGACCACCGCGTTGGCAGCCGTCAAGCCCGAAGACCTTG
TCATTGCACCGGGTGGGACCAACGATGACATGACGATGACGATGCAAGCA
GGAAGGCGCCACGCCTCCCTTGTCGCCCTCGTCCTCGTCGGCCTGCGGCT
CACGACGACCGTTGCCTTCGTCTTCCCGTCGTCATCATTGTGTACGCCAT
TTCAAGGGCTCTAGTTCACAAATGAGCAGGAGTTGGACTATCTTGAGTGG
CTGGTGCGCAAATACAAGAGGAAGGGGCGGTTGGACGAGGCCCGTGAGCT
CGAAGCAGACGTCCGGGCACGTCAGGAGTACGATGTGCGGGCCGTAACGC
GACTGAATGATGTCTTCTACCAGGCCTTCACTGAGCAAGACCCCAAGGTC
ATGGCCGAGCTCTGGTTGCGGGAGCCAGAGGTGTCGTGCATTCATCCGGG
GGTGGCGGAGGTGGTGGTGGGGTACGATCGGGTCATGCGTGTGTGGAAGG
ACATCTTGGCACCCAAGCGGTCGTGGATTAAAATCACGCCGGAGGACTGC
CGTGTGGTCGTGCGTGGGAATACGGCTTTCGCCTATTGTTTTGAGCGCGT
AGTTCCCGATGCTGCGGGTTCTAATCTAGAGCAGCGGCTGTTCGCCACGA
ATGTGTTCGTGCGGCGGCAGGGCATGTGGTACATCGGTCACCACCACGCC
ACTCTCCTGAAGGCCCCCGCCAGCGACAAACCTGCCCAAAACCAACAGCA
GCAAAATGCGGCGCTCATGCAGCAGCTGCAGCAGAGCCTGGGTTTAAACG
GCAATAAGATAATCAATCTTGTTCGCACACCAACGATGACGACCACCGCG
TTGGCAGCCGTCAAGCCCGAAGACCTTGTCATTGCACCGGGTGGGACCAA
CGATGACATGACGATGACGATGCAAGCAGGAAGGCGCCACGCCTCCCTTG
TCGCCCTCGTCCTCGTCGGCCTGCGGCTCACGACGACCGTTGCCTTCGTC
TTCCCGTCGTCATCATTGTGTACGCCATTTCAAGGGCTCTAGTTCACAAA
TGAGCAGGAGTTGGACTATCTTGAGTGGCTGGTGCGCAAATACAAGAGGA
AGGGGCGGTTGGACGAGGCCCGTGAGCTCGAAGCAGACGTCCGGGCACGT
CAGGAGTACGATGTGCGGGCCGTAACGCGACTGAATGATGTCTTCTACCA
GGCCTTCACTGAGCAAGACCCCAAGGTCATGGCCGAGCTCTGGTTGCGGG
AGCCAGAGGTGTCGTGCATTCATCCGGGGGTGGCGGAGGTGGTGGTGGGG
TACGATCGGGTCATGCGTGTGTGGAAGGACATCTTGGCACCCAAGCGGTC
GTGGATTAAAATCACGCCGGAGGACTGCCGTGTGGTCGTGCGTGGGAATA
CGGCTTTCGCCTATTGTTTTGAGCGCGTAGTTCCCGATGCTGCGGGTTCT
AATCTAGAGCAGCGGCTGTTCGCCACGAATGTGTTCGTGCGGCGGCAGGG
CATGTGGTACATCGGTCACCACCACGCCACTCTCCTGAAGGCCCCCGCCA
GCGACAAACCTGCCCAAAACCAACAGCAGCAAAATGCGGCGCTCATGCAG
CAGCTGCAGCAGAGCCTGGGTTTAAACGGCAATAAGATAATCAATCTTGT
TCGCACACCAACGATGACGACCACCGCGTTGGCAGCCGTCAAGCCCGAAG
ACCTTGTCATTGCACCGGGTGGGACCAACGATGACATGACGATGACGATG
CAAGCAGGAAGGCGCCACGCCTCCCTTGTCGCCCTCGTCCTCGTCGGCCT
GCGGCTCACGACGACCGTTGCCTTCGTCTTCCCGTCGTCATCATTGTGTA
CGCCATTTCAAG
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Synonyms
Publications