jgi.p|Nanoce1779_2|586148, mRNA_4015 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586148
Unique Name	mRNA_4015
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1784
Alignment location	scaffold_8:637481..639264 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586234
Track	FilteredModels2
ProteinId	586148

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:637481..639264 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586148	gene_4015	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586148	mRNA_4015-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4015	CDS_4015	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:637481..639264+
coding sequence from alignment at scaffold_8:637481..639264+

mRNA sequence

>mRNA_4015 ID=mRNA_4015|Name=jgi.p|Nanoce1779_2|586148|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
CAACAGGTCCAGAGGCCCCCACAGGTCCAGAGGCTAGCGCAAAAGCTGCC
AGCTTGCTTGCTCCGATAAAAACCAGTCCCGACGTCAACGGCGCCGCCAA
GTTGCCGCAGTACTCCACAATGCAGCTATGGGATGACGTGCCTGAGCATC
ACCAGGGTCTTCCAAACCCGGCGTCCCTTTCCCGTTGCCATCGTTCAGAA
GCTGCCCGCTCGTACGGCACCTTGCCTTTCCAATTCAATCGCCTCTTCTT
TAGCCCCAACGCAGGGGATTGTCGGTTTGGGAATCGTAACCTGAAGCTGG
TACACCGCGATCCACACGTCTACGAAATAGCAGACTTTCTAAGTGAGACA
GAGTACGGGCACTTAGAGCAAGTGATCGAACAGCATTTGGGCAAATTTTC
GAATTCGTACACAGACGAGGACGTGGACGCGCAGGTGGTGAGTGGCAGTC
GGACCTCGGCCTTCATTTCGTTACGTAAGGGCGGGGGGAGCAAAATGCGA
TCGATTGAGAGCCGCGCGTCGGAGATTGTGGGGTTGGCACCCGAGAACGT
CGAGCCGCTGCAACTGGTAGGATATAGGCACATGGATCGCTTTGATATTC
ATCATGACATGGGAACGTATAACAAAGAGACGGGTAAGGTGGAAGCAGTG
AGCCCGCGTCGTCTCATCACTTTCTTTGTCTATCTCAACACTTTGCCTCG
CGGTCAGGGCCACACCGTCTTCCCGAAGCTGGAAGGTGGCCGTTTCTCCG
TACAACCCAAAAGGCTCAAAGCCCTCCTTTGGTGCAATGTCCTCCCAAAC
GGCGCTCCGGACCCACGGCTCATCCACCGCGCTGATCCCGTGCGTGAGGA
AGGACATTTGAAGTTCGGAATCAACATCTGGATCACCGATAAAAACCTGG
GTGCTCTCACACTTTCCACCACACACGGCGTCATCCTCGACCACAATAAA
GTCATTCCAGGAAAGCGCACCATCCTTGCTATGATTGACCCTCCCTGCCA
CGTCTGCAAGAGCCGAGATCGGCAGCAGTTCCTCAAAGCCTGTGACAACT
GCGATATCTCCTACCACCGGTATTGCCTCCTCCCTGAAGCCCGCCCTCCC
CCTCACAACGGCCCTCGCCGTTTTTGGGCTTGTCCATTGTGTCCTGGGAA
ACGGCCACGACCTGGAGACTTTTGTGAGGTGTGTGATGGTGGGGATCGAG
AGCATTTGATTGTGTTGTGTGATACATGCGAGAGGGGATTTCATACCACT
TGTCTAGGGATGAGGAAGGTGCCCAAGGAGTCGTATTATTGCGACCTCTG
CCAAGCTAAGCGTGAGGCTAAGACCCGCGCGGACAAAGCCAGAAGAGATG
GAGCTTGTCAGGCATGTGGGGGAGTTGAGGAGCCGCATCGGATTTTGTTG
TGTGATGGGTGTGATGGAGAGTGGCATTTGGCGTGTGTGGGCTTGAAGCG
GGTACCACGGAAGGACTGGTATTGTCGAGAGTGCGCCAAAGAAATGAAAA
GGAGGAAGAAGAAGATATGCAAGGAGGAAGGGAGGGAGTAGGCCAGAGGA
CGGGTGAGTTCACCACACGGTGTTTTTACTCGCTAGTTACGTAGAAAACA
AGGGGCACACGGGCAGACTTCAATGTGCAGATGTTTGGTGTGTGTGACAT
CCCATGTTGTAACATTTGTGTATTTGGGGAGTTTGATGTATAAATAAGTG
ATGACGAATAAGGAGTGATAGGTAGGGGTTAGGGATTAATAAAACACAAA
AAGTAAGCAACAGGGGGCCCCGCGGGCGTCGTGA

protein sequence of jgi.p|Nanoce1779_2|586148

>mRNA_4015-protein ID=mRNA_4015-protein|Name=jgi.p|Nanoce1779_2|586148|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MQLWDDVPEHHQGLPNPASLSRCHRSEAARSYGTLPFQFNRLFFSPNAGD
CRFGNRNLKLVHRDPHVYEIADFLSETEYGHLEQVIEQHLGKFSNSYTDE
DVDAQVVSGSRTSAFISLRKGGGSKMRSIESRASEIVGLAPENVEPLQLV
GYRHMDRFDIHHDMGTYNKETGKVEAVSPRRLITFFVYLNTLPRGQGHTV
FPKLEGGRFSVQPKRLKALLWCNVLPNGAPDPRLIHRADPVREEGHLKFG
INIWITDKNLGALTLSTTHGVILDHNKVIPGKRTILAMIDPPCHVCKSRD
RQQFLKACDNCDISYHRYCLLPEARPPPHNGPRRFWACPLCPGKRPRPGD
FCEVCDGGDREHLIVLCDTCERGFHTTCLGMRKVPKESYYCDLCQAKREA
KTRADKARRDGACQACGGVEEPHRILLCDGCDGEWHLACVGLKRVPRKDW
YCRECAKEMKRRKKKICKEEGRE*

mRNA from alignment at scaffold_8:637481..639264+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4015 ID=mRNA_4015|Name=jgi.p|Nanoce1779_2|586148|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp|location=Sequence derived from alignment at scaffold_8:637481..639264+ (Nannochloropsis oceanica)
CAACAGGTCCAGAGGCCCCCACAGGTCCAGAGGCTAGCGCAAAAGCTGCC
AGCTTGCTTGCTCCGATAAAAACCAGTCCCGACGTCAACGGCGCCGCCAA
GTTGCCGCAGTACTCCACAATGCAGCTATGGGATGACGTGCCTGAGCATC
ACCAGGGTCTTCCAAACCCGGCGTCCCTTTCCCGTTGCCATCGTTCAGAA
GCTGCCCGCTCGTACGGCACCTTGCCTTTCCAATTCAATCGCCTCTTCTT
TAGCCCCAACGCAGGGGATTGTCGGTTTGGGAATCGTAACCTGAAGCTGG
TACACCGCGATCCACACGTCTACGAAATAGCAGACTTTCTAAGTGAGACA
GAGTACGGGCACTTAGAGCAAGTGATCGAACAGCATTTGGGCAAATTTTC
GAATTCGTACACAGACGAGGACGTGGACGCGCAGGTGGTGAGTGGCAGTC
GGACCTCGGCCTTCATTTCGTTACGTAAGGGCGGGGGGAGCAAAATGCGA
TCGATTGAGAGCCGCGCGTCGGAGATTGTGGGGTTGGCACCCGAGAACGT
CGAGCCGCTGCAACTGGTAGGATATAGGCACATGGATCGCTTTGATATTC
ATCATGACATGGGAACGTATAACAAAGAGACGGGTAAGGTGGAAGCAGTG
AGCCCGCGTCGTCTCATCACTTTCTTTGTCTATCTCAACACTTTGCCTCG
CGGTCAGGGCCACACCGTCTTCCCGAAGCTGGAAGGTGGCCGTTTCTCCG
TACAACCCAAAAGGCTCAAAGCCCTCCTTTGGTGCAATGTCCTCCCAAAC
GGCGCTCCGGACCCACGGCTCATCCACCGCGCTGATCCCGTGCGTGAGGA
AGGACATTTGAAGTTCGGAATCAACATCTGGATCACCGATAAAAACCTGG
GTGCTCTCACACTTTCCACCACACACGGCGTCATCCTCGACCACAATAAA
GTCATTCCAGGAAAGCGCACCATCCTTGCTATGATTGACCCTCCCTGCCA
CGTCTGCAAGAGCCGAGATCGGCAGCAGTTCCTCAAAGCCTGTGACAACT
GCGATATCTCCTACCACCGGTATTGCCTCCTCCCTGAAGCCCGCCCTCCC
CCTCACAACGGCCCTCGCCGTTTTTGGGCTTGTCCATTGTGTCCTGGGAA
ACGGCCACGACCTGGAGACTTTTGTGAGGTGTGTGATGGTGGGGATCGAG
AGCATTTGATTGTGTTGTGTGATACATGCGAGAGGGGATTTCATACCACT
TGTCTAGGGATGAGGAAGGTGCCCAAGGAGTCGTATTATTGCGACCTCTG
CCAAGCTAAGCGTGAGGCTAAGACCCGCGCGGACAAAGCCAGAAGAGATG
GAGCTTGTCAGGCATGTGGGGGAGTTGAGGAGCCGCATCGGATTTTGTTG
TGTGATGGGTGTGATGGAGAGTGGCATTTGGCGTGTGTGGGCTTGAAGCG
GGTACCACGGAAGGACTGGTATTGTCGAGAGTGCGCCAAAGAAATGAAAA
GGAGGAAGAAGAAGATATGCAAGGAGGAAGGGAGGGAGTAGGCCAGAGGA
CGGGTGAGTTCACCACACGGTGTTTTTACTCGCTAGTTACGTAGAAAACA
AGGGGCACACGGGCAGACTTCAATGTGCAGATGTTTGGTGTGTGTGACAT
CCCATGTTGTAACATTTGTGTATTTGGGGAGTTTGATGTATAAATAAGTG
ATGACGAATAAGGAGTGATAGGTAGGGGTTAGGGATTAATAAAACACAAA
AAGTAAGCAACAGGGGGCCCCGCGGGCGTCGTGA

Coding sequence (CDS) from alignment at scaffold_8:637481..639264+

>mRNA_4015 ID=mRNA_4015|Name=jgi.p|Nanoce1779_2|586148|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_8:637481..639264+ (Nannochloropsis oceanica)
ATGCAGCTATGGGATGACGTGCCTGAGCATCACCAGGGTCTTCCAAACCC
GGCGTCCCTTTCCCGTTGCCATCGTTCAGAAGCTGCCCGCTCGTACGGCA
CCTTGCCTTTCCAATTCAATCGCCTCTTCTTTAGCCCCAACGCAGGGGAT
TGTCGGTTTGGGAATCGTAACCTGAAGCTGGTACACCGCGATCCACACGT
CTACGAAATAGCAGACTTTCTAAGTGAGACAGAGTACGGGCACTTAGAGC
AAGTGATCGAACAGCATTTGGGCAAATTTTCGAATTCGTACACAGACGAG
GACGTGGACGCGCAGGTGGTGAGTGGCAGTCGGACCTCGGCCTTCATTTC
GTTACGTAAGGGCGGGGGGAGCAAAATGCGATCGATTGAGAGCCGCGCGT
CGGAGATTGTGGGGTTGGCACCCGAGAACGTCGAGCCGCTGCAACTGGTA
GGATATAGGCACATGGATCGCTTTGATATTCATCATGACATGGGAACGTA
TAACAAAGAGACGGGTAAGGTGGAAGCAGTGAGCCCGCGTCGTCTCATCA
CTTTCTTTGTCTATCTCAACACTTTGCCTCGCGGTCAGGGCCACACCGTC
TTCCCGAAGCTGGAAGGTGGCCGTTTCTCCGTACAACCCAAAAGGCTCAA
AGCCCTCCTTTGGTGCAATGTCCTCCCAAACGGCGCTCCGGACCCACGGC
TCATCCACCGCGCTGATCCCGTGCGTGAGGAAGGACATTTGAAGTTCGGA
ATCAACATCTGGATCACCGATAAAAACCTGGGTGCTCTCACACTTTCCAC
CACACACGGCGTCATCCTCGACCACAATAAAGTCATTCCAGGAAAGCGCA
CCATCCTTGCTATGATTGACCCTCCCTGCCACGTCTGCAAGAGCCGAGAT
CGGCAGCAGTTCCTCAAAGCCTGTGACAACTGCGATATCTCCTACCACCG
GTATTGCCTCCTCCCTGAAGCCCGCCCTCCCCCTCACAACGGCCCTCGCC
GTTTTTGGGCTTGTCCATTGTGTCCTGGGAAACGGCCACGACCTGGAGAC
TTTTGTGAGGTGTGTGATGGTGGGGATCGAGAGCATTTGATTGTGTTGTG
TGATACATGCGAGAGGGGATTTCATACCACTTGTCTAGGGATGAGGAAGG
TGCCCAAGGAGTCGTATTATTGCGACCTCTGCCAAGCTAAGCGTGAGGCT
AAGACCCGCGCGGACAAAGCCAGAAGAGATGGAGCTTGTCAGGCATGTGG
GGGAGTTGAGGAGCCGCATCGGATTTTGTTGTGTGATGGGTGTGATGGAG
AGTGGCATTTGGCGTGTGTGGGCTTGAAGCGGGTACCACGGAAGGACTGG
TATTGTCGAGAGTGCGCCAAAGAAATGAAAAGGAGGAAGAAGAAGATATG
CAAGGAGGAAGGGAGGGAGTAG

Synonyms

Publications