jgi.p|Nanoce1779_2|586142, mRNA_4014 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586142
Unique NamemRNA_4014
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length417
Alignment locationscaffold_8:636483..637165 -

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Properties
Property NameValue
TranscriptId586228
TrackFilteredModels2
ProteinId586142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:636483..637165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586142gene_4014Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586142mRNA_4014-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4014CDS_4014Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4014 ID=mRNA_4014|Name=jgi.p|Nanoce1779_2|586142|organism=Nannochloropsis oceanica|type=mRNA|length=417bp
CAGTAGCAAGTACTTTAACAACGGCAAGTCAATCTGCCCAGCAGCATCTT
TTCATGCTGTTTTACTCTTTTTTCAAGAAACTGGTAGGCAAAGAGGTGGC
GGTAGAGCTTAAAAACGATGTAGAGCTAACGGGCAAGCTGCACTCTGTCG
ATCAGTACCTGAATGTGAAGCTGGAGGATGTGCAGGTGGTCAAGAAGGAG
CGATACCCCCAATTGCTGGCTGTCAAGAACGTCTTCATCCGCGGATCGGT
CATCCGATTTATCCAACTGCCGGCCAGCGAGGTGGACGTGCAGCTTCTAC
AAGACTCCTGTCGCAAGGACAACCAAAGCGGCAAAGGAAGATAAGAAGCG
CGTCCCGGTTGTACGTTTTGCCCATGGACAGGGAATGCGAATAAAAGTAA
AAAACAAAACATGAAAA
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protein sequence of jgi.p|Nanoce1779_2|586142

>mRNA_4014-protein ID=mRNA_4014-protein|Name=jgi.p|Nanoce1779_2|586142|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MLFYSFFKKLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKER
YPQLLAVKNVFIRGSVIRFIQLPASEVDVQLLQDSCRKDNQSGKGR*
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mRNA from alignment at scaffold_8:636483..637165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4014 ID=mRNA_4014|Name=jgi.p|Nanoce1779_2|586142|organism=Nannochloropsis oceanica|type=mRNA|length=683bp|location=Sequence derived from alignment at scaffold_8:636483..637165- (Nannochloropsis oceanica)
CAGTAGCAAGTACTTTAACAACGGCAAGTCAATCTGCCCAGCAGCATCTT
TTCATGGTAAGTGAAGGGGGGGTATAATGAAGAGAATAGGACCTATGCTA
GCCGACTGGCGGAGTCCGTGCCAGCCTGCCAATCTATACATGTAGCCCTC
ACCGATACAACCACTCCCAAACCGTAGCTGTTTTACTCTTTTTTCAAGAA
ACTGGTAGGCAAAGAGGTGGCGGTAGAGCTTAAAAACGATGTAGAGCTAA
CGGGCAAGCTGCACTCTGTCGATCAGTACCTGAATGTGAAGCTGGAGGAT
GTGCAGGTGGTCAAGAAGGAGCGATACCCCCAATTGGTACGTGGGGGAGG
GTTCGGGATGGAACACAGATCATATAATTCACGTTCGAGATTGCCGAGAT
TGGCAGGCCGCGGAACGTTGTCCCATGTGTTCACTCTGCCCATTCCCATC
CACCTTCCGTCCTTCCACCACGCACGCTCAGCTGGCTGTCAAGAACGTCT
TCATCCGCGGATCGGTCATCCGATTTATCCAACTGCCGGCCAGCGAGGTG
GACGTGCAGCTTCTACAAGACTCCTGTCGCAAGGACAACCAAAGCGGCAA
AGGAAGATAAGAAGCGCGTCCCGGTTGTACGTTTTGCCCATGGACAGGGA
ATGCGAATAAAAGTAAAAAACAAAACATGAAAA
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Coding sequence (CDS) from alignment at scaffold_8:636483..637165-

>mRNA_4014 ID=mRNA_4014|Name=jgi.p|Nanoce1779_2|586142|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_8:636483..637165- (Nannochloropsis oceanica)
CTGGCTGTCAAGAACGTCTTCATCCGCGGATCGGTCATCCGATTTATCCA
ACTGCCGGCCAGCGAGGTGGACGTGCAGCTTCTACAAGACTCCTGTCGCA
AGGACAACCAAAGCGGCAAAGGAAGATAACTGTTTTACTCTTTTTTCAAG
AAACTGGTAGGCAAAGAGGTGGCGGTAGAGCTTAAAAACGATGTAGAGCT
AACGGGCAAGCTGCACTCTGTCGATCAGTACCTGAATGTGAAGCTGGAGG
ATGTGCAGGTGGTCAAGAAGGAGCGATACCCCCAATTGATGCTGGCTGTC
AAGAACGTCTTCATCCGCGGATCGGTCATCCGATTTATCCAACTGCCGGC
CAGCGAGGTGGACGTGCAGCTTCTACAAGACTCCTGTCGCAAGGACAACC
AAAGCGGCAAAGGAAGATAACTGTTTTACTCTTTTTTCAAGAAACTGGTA
GGCAAAGAGGTGGCGGTAGAGCTTAAAAACGATGTAGAGCTAACGGGCAA
GCTGCACTCTGTCGATCAGTACCTGAATGTGAAGCTGGAGGATGTGCAGG
TGGTCAAGAAGGAGCGATACCCCCAATTGATGCTGGCTGTCAAGAACGTC
TTCATCCGCGGATCGGTCATCCGATTTATCCAACTGCCGGCCAGCGAGGT
GGACGTGCAGCTTCTACAAGACTCCTGTCGCAAGGACAACCAAAGCGGCA
AAGGAAGATAACTGTTTTACTCTTTTTTCAAGAAACTGGTAGGCAAAGAG
GTGGCGGTAGAGCTTAAAAACGATGTAGAGCTAACGGGCAAGCTGCACTC
TGTCGATCAGTACCTGAATGTGAAGCTGGAGGATGTGCAGGTGGTCAAGA
AGGAGCGATACCCCCAATTGATG
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Synonyms
Publications