jgi.p|Nanoce1779_2|586140, mRNA_4013 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586140
Unique NamemRNA_4013
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_8:635500..636462 +

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Properties
Property NameValue
TranscriptId586226
TrackFilteredModels2
ProteinId586140
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:635500..636462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586140gene_4013Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586140mRNA_4013-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4013CDS_4013Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4013 ID=mRNA_4013|Name=jgi.p|Nanoce1779_2|586140|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
CAGGAAGAGTACACGCAAGCTTGGTCTTGGCAGGAAAAGCCCCCCCCCTG
GACGCTCAGTCAAGCAAGCCAGGAGTGATCATGGCTACGAGGACCCCGCA
GCAAGAAGACGACGAGACGACGGCCGTATCGGAGGTGGACGTGGAGAGCG
AATTAAGCCAGCACACCCTGGCCATGTTGAAGGAGCACTTGGCCGAGAAA
GAGCACGAGGGCCCTGCTCACCTCTTAGGCAAAGAGAATTACGGCCTTGC
CCAATTCTGGTATTCAGAGGAGACTGCGAAGGCGCTCTTGATGGAAGCCC
TATCCCACGTAACGGATGGTGGTGTAGTGGCCGTATTAAGTGCCCCCTCT
CTAATGGTGCCGGCACAGGAGTTAGAGGGCGGCAAGCATTTTTCTAAGCT
GCAGCTTTTTGAGATTGATGAACGTTTCGGAGTCCAATTTCCCGACAATT
TCTATCACTACGATTATAATGCAGCGACCGTCCTCCCCACCAAAATGTTG
AGGCAAGTGACGGCCTTTGTGATCGACCCTCCACGCCTGAATATTGATAC
GTTGAAAGAGTATTTTATTTCAACACGTCTTCTCGCCAAACCGTGCACGG
ACGGCAGTGTGCCGCCATGCATTGTGGTGACGGCTGCTGTACTCGAGGAC
GCTGTGAGGGAGGAGTTCGGGCTGCGACCAGTACTAAAATTTGAGATAAT
CCACACTAGCAAGCTAGGAAATCCGCTGCAGGCGTATACAAACTACCCGC
CCAAGGTCTTAGACGCCTCTTCTTGGCAGGAGACTGTATGAGTGAAGGAG
AGAAAAAGAAGTGAAGACGCAGCTCACAAGTCATGCGTGTCTTTTGCTAT
TTTGGCTTGTGGACTTCAATAATATGTTGTACCTGCGCCAGGCGGAAGTT
TTTCGATTTCAACTTTTGTAAAATAAAATATTGAATGAGAAGGAGCGAAA
GGAAAAAAGCATG
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protein sequence of jgi.p|Nanoce1779_2|586140

>mRNA_4013-protein ID=mRNA_4013-protein|Name=jgi.p|Nanoce1779_2|586140|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MATRTPQQEDDETTAVSEVDVESELSQHTLAMLKEHLAEKEHEGPAHLLG
KENYGLAQFWYSEETAKALLMEALSHVTDGGVVAVLSAPSLMVPAQELEG
GKHFSKLQLFEIDERFGVQFPDNFYHYDYNAATVLPTKMLRQVTAFVIDP
PRLNIDTLKEYFISTRLLAKPCTDGSVPPCIVVTAAVLEDAVREEFGLRP
VLKFEIIHTSKLGNPLQAYTNYPPKVLDASSWQETV*
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mRNA from alignment at scaffold_8:635500..636462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4013 ID=mRNA_4013|Name=jgi.p|Nanoce1779_2|586140|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at scaffold_8:635500..636462+ (Nannochloropsis oceanica)
CAGGAAGAGTACACGCAAGCTTGGTCTTGGCAGGAAAAGCCCCCCCCCTG
GACGCTCAGTCAAGCAAGCCAGGAGTGATCATGGCTACGAGGACCCCGCA
GCAAGAAGACGACGAGACGACGGCCGTATCGGAGGTGGACGTGGAGAGCG
AATTAAGCCAGCACACCCTGGCCATGTTGAAGGAGCACTTGGCCGAGAAA
GAGCACGAGGGCCCTGCTCACCTCTTAGGCAAAGAGAATTACGGCCTTGC
CCAATTCTGGTATTCAGAGGAGACTGCGAAGGCGCTCTTGATGGAAGCCC
TATCCCACGTAACGGATGGTGGTGTAGTGGCCGTATTAAGTGCCCCCTCT
CTAATGGTGCCGGCACAGGAGTTAGAGGGCGGCAAGCATTTTTCTAAGCT
GCAGCTTTTTGAGATTGATGAACGTTTCGGAGTCCAATTTCCCGACAATT
TCTATCACTACGATTATAATGCAGCGACCGTCCTCCCCACCAAAATGTTG
AGGCAAGTGACGGCCTTTGTGATCGACCCTCCACGCCTGAATATTGATAC
GTTGAAAGAGTATTTTATTTCAACACGTCTTCTCGCCAAACCGTGCACGG
ACGGCAGTGTGCCGCCATGCATTGTGGTGACGGCTGCTGTACTCGAGGAC
GCTGTGAGGGAGGAGTTCGGGCTGCGACCAGTACTAAAATTTGAGATAAT
CCACACTAGCAAGCTAGGAAATCCGCTGCAGGCGTATACAAACTACCCGC
CCAAGGTCTTAGACGCCTCTTCTTGGCAGGAGACTGTATGAGTGAAGGAG
AGAAAAAGAAGTGAAGACGCAGCTCACAAGTCATGCGTGTCTTTTGCTAT
TTTGGCTTGTGGACTTCAATAATATGTTGTACCTGCGCCAGGCGGAAGTT
TTTCGATTTCAACTTTTGTAAAATAAAATATTGAATGAGAAGGAGCGAAA
GGAAAAAAGCATG
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Coding sequence (CDS) from alignment at scaffold_8:635500..636462+

>mRNA_4013 ID=mRNA_4013|Name=jgi.p|Nanoce1779_2|586140|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_8:635500..636462+ (Nannochloropsis oceanica)
ATGGCTACGAGGACCCCGCAGCAAGAAGACGACGAGACGACGGCCGTATC
GGAGGTGGACGTGGAGAGCGAATTAAGCCAGCACACCCTGGCCATGTTGA
AGGAGCACTTGGCCGAGAAAGAGCACGAGGGCCCTGCTCACCTCTTAGGC
AAAGAGAATTACGGCCTTGCCCAATTCTGGTATTCAGAGGAGACTGCGAA
GGCGCTCTTGATGGAAGCCCTATCCCACGTAACGGATGGTGGTGTAGTGG
CCGTATTAAGTGCCCCCTCTCTAATGGTGCCGGCACAGGAGTTAGAGGGC
GGCAAGCATTTTTCTAAGCTGCAGCTTTTTGAGATTGATGAACGTTTCGG
AGTCCAATTTCCCGACAATTTCTATCACTACGATTATAATGCAGCGACCG
TCCTCCCCACCAAAATGTTGAGGCAAGTGACGGCCTTTGTGATCGACCCT
CCACGCCTGAATATTGATACGTTGAAAGAGTATTTTATTTCAACACGTCT
TCTCGCCAAACCGTGCACGGACGGCAGTGTGCCGCCATGCATTGTGGTGA
CGGCTGCTGTACTCGAGGACGCTGTGAGGGAGGAGTTCGGGCTGCGACCA
GTACTAAAATTTGAGATAATCCACACTAGCAAGCTAGGAAATCCGCTGCA
GGCGTATACAAACTACCCGCCCAAGGTCTTAGACGCCTCTTCTTGGCAGG
AGACTGTATGA
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Synonyms
Publications