jgi.p|Nanoce1779_2|586131, mRNA_4010 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586131
Unique NamemRNA_4010
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1269
Alignment locationscaffold_8:625336..626785 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586217
TrackFilteredModels2
ProteinId586131
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:625336..626785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586131gene_4010Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586131mRNA_4010-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4010CDS_4010Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4010 ID=mRNA_4010|Name=jgi.p|Nanoce1779_2|586131|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
AGAACCGAGGACCGATGGCACCTACACCTGGCAACGTGGCGGTGGAAATG
GTGGACGCGCTTAAGGGGCAGCCTTTGGCGCTGCAGGTTTTGGCCGGGGT
GGGGGCTTTGTTGGTGCTCAAGTTTGTGTTCGGCGTGGTCCAGGCCTTCT
ACCGCTTCTTCCTTCGCCCGGGCAAGAATCTGAAAAAGTTTGGTGCCTGG
GCCGTAGTGACAGGGGCGACGGACGGTATTGGCAAGGCGTATGCATTTGA
GTTGGCCAGGCAGGGGTTGAGCTTGTTGTTGATTTCCCGCACGGAGTCCA
AGCTCAAGGACACGGCCGCGGAAATCTCGTCCAAGTACCCTAAGGTCAAG
GTGCAAGTCCTCAGCATCGACTTCAGCAACTTTAACGAGGCCGCACAAGC
CAGGGTAGGTAAGGCCATCAAGGATTTGGATATTGGCGTGCTTATTAATA
ACGTGGGGCAAAGCTACGACTTCCCCGTGTACTTCGATGAGCTCTCCGAG
GAGCAAGTTCACTCCCTCGTCGAGCTCAACGTCACCTCCACCCTGCACAT
GACTCGCCTCATCCTCCCGACCATGGTGGCAAAGAAGAAGGGTGCTATTG
TCAACCTTGCTTCAGCCGCGTCCCGTAACCCGTCCCCCTTGCTCGCTCTC
TACTCGGGTGCCAAGTCTTTTATTGAGCTCTTCTCTCAATCGCTCGACGC
CGAATATAAGGGTAAGGGCATCCATGTCCAAGTCCAAACCCCTCTTTTCG
TCGCCACCAAGCTGGCCAAAATCCGCAAGGCGAGCCTGACGGTCCCTTCT
CCTGCCGGGTACGCGAAGGCGGCCGTACGATTTATCGCCTATGAGGACTC
GGTATCACCCTTCTGGAGTCATGCGTTTCAGTTATATTTGATGTCTTGCA
TGCCCAAGTCAGTGTTGTCGGCGATTGTCTTTAACATGCATGCGGGGCTT
AGGAAGCGGGGCTTGAAGAAAAAGAGAGAGAAGAGTGCTTGAATGGGTAG
AGGGTGCGTAGAATAGATGAGAAAGGAGAAAGGGGAGGAAAGGTTTGTGT
GTGCCGGGCAGGGCGGGAGAGAGGGAGGGAGACGTGTCTAGGACAAACAA
AAAGAGAAGGGTGGCACACGCACTGGACGTTTAGAAACAAGGCAAAGCTC
AGGAATGGGGGAAAATGGACTGTAGGAGGGGGTTGTGTGTGTGGAGGACA
ACACACATACACAACACACACTTCTGATAGGCAGGCGAATCACGCGAATA
ATTTGATCAGTATGATGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|586131

>mRNA_4010-protein ID=mRNA_4010-protein|Name=jgi.p|Nanoce1779_2|586131|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MAPTPGNVAVEMVDALKGQPLALQVLAGVGALLVLKFVFGVVQAFYRFFL
RPGKNLKKFGAWAVVTGATDGIGKAYAFELARQGLSLLLISRTESKLKDT
AAEISSKYPKVKVQVLSIDFSNFNEAAQARVGKAIKDLDIGVLINNVGQS
YDFPVYFDELSEEQVHSLVELNVTSTLHMTRLILPTMVAKKKGAIVNLAS
AASRNPSPLLALYSGAKSFIELFSQSLDAEYKGKGIHVQVQTPLFVATKL
AKIRKASLTVPSPAGYAKAAVRFIAYEDSVSPFWSHAFQLYLMSCMPKSV
LSAIVFNMHAGLRKRGLKKKREKSA*
back to top

mRNA from alignment at scaffold_8:625336..626785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4010 ID=mRNA_4010|Name=jgi.p|Nanoce1779_2|586131|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_8:625336..626785- (Nannochloropsis oceanica)
AGAACCGAGGACCGATGGCACCTACACCTGGCAACGTGGCGGTGGAAATG
GTGGACGCGCTTAAGGGGCAGCCTTTGGCGCTGCAGGTTTTGGCCGGGGT
GGGGGCTTTGTTGGTGCTCAAGTTTGTGTTCGGCGTGGTCCAGGCCTTCT
ACCGCTTCTTCCTTCGCCCGGGCAAGAATCTGAAAAAGTTTGGTGCCTGG
GCCGTAGTGACAGGGGCGACGGACGGTATTGGCAAGGCGTATGCATTTGA
GTTGGCCAGGCAGGGGTTGAGCTTGTTGTTGATTTCCCGCACGGAGTCCA
AGCTCAAGGACACGGCCGCGGAAATCTCGTCCAAGTACCCTAAGGTCAAG
GTGCAAGTCCTCAGTAAGTCTCAAAAGAGAGAGAAGCTTAAAGAGGAGAT
AAAGGAGAATTACGACGACGTAATGCTATACCACGTTCTTTTCTATGTTT
CTTCCCTGATAATCATCACATGTAATCATACCGTTCAACCATGCCTCCGC
ACTAATCATGCTTTCCCCCCATTATACCCACGCACCTAAACCAGGCATCG
ACTTCAGCAACTTTAACGAGGCCGCACAAGCCAGGGTAGGTAAGGCCATC
AAGGATTTGGATATTGGCGTGCTTATTAATAACGTGGGGCAAAGCTACGA
CTTCCCCGTGTACTTCGATGAGCTCTCCGAGGAGCAAGTTCACTCCCTCG
TCGAGCTCAACGTCACCTCCACCCTGCACATGACTCGCCTCATCCTCCCG
ACCATGGTGGCAAAGAAGAAGGGTGCTATTGTCAACCTTGCTTCAGCCGC
GTCCCGTAACCCGTCCCCCTTGCTCGCTCTCTACTCGGGTGCCAAGTCTT
TTATTGAGCTCTTCTCTCAATCGCTCGACGCCGAATATAAGGGTAAGGGC
ATCCATGTCCAAGTCCAAACCCCTCTTTTCGTCGCCACCAAGCTGGCCAA
AATCCGCAAGGCGAGCCTGACGGTCCCTTCTCCTGCCGGGTACGCGAAGG
CGGCCGTACGATTTATCGCCTATGAGGACTCGGTATCACCCTTCTGGAGT
CATGCGTTTCAGTTATATTTGATGTCTTGCATGCCCAAGTCAGTGTTGTC
GGCGATTGTCTTTAACATGCATGCGGGGCTTAGGAAGCGGGGCTTGAAGA
AAAAGAGAGAGAAGAGTGCTTGAATGGGTAGAGGGTGCGTAGAATAGATG
AGAAAGGAGAAAGGGGAGGAAAGGTTTGTGTGTGCCGGGCAGGGCGGGAG
AGAGGGAGGGAGACGTGTCTAGGACAAACAAAAAGAGAAGGGTGGCACAC
GCACTGGACGTTTAGAAACAAGGCAAAGCTCAGGAATGGGGGAAAATGGA
CTGTAGGAGGGGGTTGTGTGTGTGGAGGACAACACACATACACAACACAC
ACTTCTGATAGGCAGGCGAATCACGCGAATAATTTGATCAGTATGATGAC
back to top

Coding sequence (CDS) from alignment at scaffold_8:625336..626785-

>mRNA_4010 ID=mRNA_4010|Name=jgi.p|Nanoce1779_2|586131|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_8:625336..626785- (Nannochloropsis oceanica)
GCATCGACTTCAGCAACTTTAACGAGGCCGCACAAGCCAGGGTAGGTAAG
GCCATCAAGGATTTGGATATTGGCGTGCTTATTAATAACGTGGGGCAAAG
CTACGACTTCCCCGTGTACTTCGATGAGCTCTCCGAGGAGCAAGTTCACT
CCCTCGTCGAGCTCAACGTCACCTCCACCCTGCACATGACTCGCCTCATC
CTCCCGACCATGGTGGCAAAGAAGAAGGGTGCTATTGTCAACCTTGCTTC
AGCCGCGTCCCGTAACCCGTCCCCCTTGCTCGCTCTCTACTCGGGTGCCA
AGTCTTTTATTGAGCTCTTCTCTCAATCGCTCGACGCCGAATATAAGGGT
AAGGGCATCCATGTCCAAGTCCAAACCCCTCTTTTCGTCGCCACCAAGCT
GGCCAAAATCCGCAAGGCGAGCCTGACGGTCCCTTCTCCTGCCGGGTACG
CGAAGGCGGCCGTACGATTTATCGCCTATGAGGACTCGGTATCACCCTTC
TGGAGTCATGCGTTTCAGTTATATTTGATGTCTTGCATGCCCAAGTCAGT
GTTGTCGGCGATTGTCTTTAACATGCATGCGGGGCTTAGGAAGCGGGGCT
TGAAGAAAAAGAGAGAGAAGAGTGCTTGAATGGCACCTACACCTGGCAAC
GTGGCGGTGGAAATGGTGGACGCGCTTAAGGGGCAGCCTTTGGCGCTGCA
GGTTTTGGCCGGGGTGGGGGCTTTGTTGGTGCTCAAGTTTGTGTTCGGCG
TGGTCCAGGCCTTCTACCGCTTCTTCCTTCGCCCGGGCAAGAATCTGAAA
AAGTTTGGTGCCTGGGCCGTAGTGACAGGGGCGACGGACGGTATTGGCAA
GGCGTATGCATTTGAGTTGGCCAGGCAGGGGTTGAGCTTGTTGTTGATTT
CCCGCACGGAGTCCAAGCTCAAGGACACGGCCGCGGAAATCTCGTCCAAG
TACCCTAAGGTCAAGGTGCAAGTCCTCAGCATCGACTTCAGCAACTTTAA
CGAGGCCGCACAAGCCAGGGTAGGTAAGGCCATCAAGGATTTGGATATTG
GCGTGCTTATTAATAACGTGGGGCAAAGCTACGACTTCCCCGTGTACTTC
GATGAGCTCTCCGAGGAGCAAGTTCACTCCCTCGTCGAGCTCAACGTCAC
CTCCACCCTGCACATGACTCGCCTCATCCTCCCGACCATGGTGGCAAAGA
AGAAGGGTGCTATTGTCAACCTTGCTTCAGCCGCGTCCCGTAACCCGTCC
CCCTTGCTCGCTCTCTACTCGGGTGCCAAGTCTTTTATTGAGCTCTTCTC
TCAATCGCTCGACGCCGAATATAAGGGTAAGGGCATCCATGTCCAAGTCC
AAACCCCTCTTTTCGTCGCCACCAAGCTGGCCAAAATCCGCAAGGCGAGC
CTGACGGTCCCTTCTCCTGCCGGGTACGCGAAGGCGGCCGTACGATTTAT
CGCCTATGAGGACTCGGTATCACCCTTCTGGAGTCATGCGTTTCAGTTAT
ATTTGATGTCTTGCATGCCCAAGTCAGTGTTGTCGGCGATTGTCTTTAAC
ATGCATGCGGGGCTTAGGAAGCGGGGCTTGAAGAAAAAGAGAGAGAAGAG
TGCTTGAATGGCACCTACACCTGGCAACGTGGCGGTGGAAATGGTGGACG
CGCTTAAGGGGCAGCCTTTGGCGCTGCAGGTTTTGGCCGGGGTGGGGGCT
TTGTTGGTGCTCAAGTTTGTGTTCGGCGTGGTCCAGGCCTTCTACCGCTT
CTTCCTTCGCCCGGGCAAGAATCTGAAAAAGTTTGGTGCCTGGGCCGTAG
TGACAGGGGCGACGGACGGTATTGGCAAGGCGTATGCATTTGAGTTGGCC
AGGCAGGGGTTGAGCTTGTTGTTGATTTCCCGCACGGAGTCCAAGCTCAA
GGACACGGCCGCGGAAATCTCGTCCAAGTACCCTAAGGTCAAGGTGCAAG
TCCTCA
back to top
Synonyms
Publications