jgi.p|Nanoce1779_2|586126, mRNA_4008 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586126
Unique NamemRNA_4008
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length910
Alignment locationscaffold_8:618090..618999 -

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Properties
Property NameValue
TranscriptId586212
TrackFilteredModels2
ProteinId586126
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:618090..618999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586126gene_4008Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586126mRNA_4008-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4008CDS_4008Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4008 ID=mRNA_4008|Name=jgi.p|Nanoce1779_2|586126|organism=Nannochloropsis oceanica|type=mRNA|length=910bp
AGACACATACACAGGCTCCACACTTTCACTCCAACGCCAAAACGACGACC
ATGGCTGCCGCTCCCTCCCGCACGCACGTCCTAGGCCTATTTCGGTCCTT
ACTCCGCCAAGCCGGACGGATGGAGGACTACAACTTTCGTTCCTACGCCC
AGCGCCGCGTGACCATGGCGTTCCAGGAAGGACGTGCACTGAGTGGGGAG
GATGCCGCACGGGAATATCAGGAGGGACTCAAAAACCTGGATATGCTGAA
GAGGCAAGTTCTCATCAGCCACTTGTACCCGTCCAAGCGCTCCGTCATGG
AGACTGAACCGCACAAGGCACCCACCCTGGGCTAGAGAGCTTAAGACGAT
GAGGATGAGGAATAATAGAGGACGTAGATAAATGAGGTTGTGGCTTGTAC
AAATAGAAATGGGGACAGGAGTATCAAGACAAGTGTTTCCGAAGAGTGAA
GTGGTGTGGACTATCGAGGCCGGCTCTTGCTTACTCTTTCGTTCCTGTCC
CTCCCACGACACGGTGCTCCTCCTTATTTCTTTTCCTCATTTTCTTCTCG
TTATATATCGAAGCCCGTGTCGGCGTCTTCCTTCCTCAGTCCACGTCTTT
CAGGAGCTTCTGACAGCAATTTTGCCATGTTGCGTCAACCTGCAGTGGGG
CAATCCTTTTCAAGCAATTCCCCCCGCCAAGAAAGAAGCGGCGACAAAAC
TGTCAATTATCGTTAGAAAAATCCTATCTGTACGCTATCAAAGAGTGTTC
TGCTTTGCATCATGTCGTAAAGGGATAGTACGGGTCCGGAATCCTTTTTG
TCCTTCCCGTGGAGAAAATGAGCAGTCTGGCATTGGTTAAAAAATGGACG
AAACGAGTTCCTTTCAACTTATCTTCTCATGAATGTCCAACGATTGGTCG
GTTGGTCAAG
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protein sequence of jgi.p|Nanoce1779_2|586126

>mRNA_4008-protein ID=mRNA_4008-protein|Name=jgi.p|Nanoce1779_2|586126|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MAAAPSRTHVLGLFRSLLRQAGRMEDYNFRSYAQRRVTMAFQEGRALSGE
DAAREYQEGLKNLDMLKRQVLISHLYPSKRSVMETEPHKAPTLG*
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mRNA from alignment at scaffold_8:618090..618999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4008 ID=mRNA_4008|Name=jgi.p|Nanoce1779_2|586126|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_8:618090..618999- (Nannochloropsis oceanica)
AGACACATACACAGGCTCCACACTTTCACTCCAACGCCAAAACGACGACC
ATGGCTGCCGCTCCCTCCCGCACGCACGTCCTAGGCCTATTTCGGTCCTT
ACTCCGCCAAGCCGGACGGATGGAGGACTACAACTTTCGTTCCTACGCCC
AGCGCCGCGTGACCATGGCGTTCCAGGAAGGACGTGCACTGAGTGGGGAG
GATGCCGCACGGGAATATCAGGAGGGACTCAAAAACCTGGATATGCTGAA
GAGGCAAGTTCTCATCAGCCACTTGTACCCGTCCAAGCGCTCCGTCATGG
AGACTGAACCGCACAAGGCACCCACCCTGGGCTAGAGAGCTTAAGACGAT
GAGGATGAGGAATAATAGAGGACGTAGATAAATGAGGTTGTGGCTTGTAC
AAATAGAAATGGGGACAGGAGTATCAAGACAAGTGTTTCCGAAGAGTGAA
GTGGTGTGGACTATCGAGGCCGGCTCTTGCTTACTCTTTCGTTCCTGTCC
CTCCCACGACACGGTGCTCCTCCTTATTTCTTTTCCTCATTTTCTTCTCG
TTATATATCGAAGCCCGTGTCGGCGTCTTCCTTCCTCAGTCCACGTCTTT
CAGGAGCTTCTGACAGCAATTTTGCCATGTTGCGTCAACCTGCAGTGGGG
CAATCCTTTTCAAGCAATTCCCCCCGCCAAGAAAGAAGCGGCGACAAAAC
TGTCAATTATCGTTAGAAAAATCCTATCTGTACGCTATCAAAGAGTGTTC
TGCTTTGCATCATGTCGTAAAGGGATAGTACGGGTCCGGAATCCTTTTTG
TCCTTCCCGTGGAGAAAATGAGCAGTCTGGCATTGGTTAAAAAATGGACG
AAACGAGTTCCTTTCAACTTATCTTCTCATGAATGTCCAACGATTGGTCG
GTTGGTCAAG
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Coding sequence (CDS) from alignment at scaffold_8:618090..618999-

>mRNA_4008 ID=mRNA_4008|Name=jgi.p|Nanoce1779_2|586126|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_8:618090..618999- (Nannochloropsis oceanica)
ATGGCTGCCGCTCCCTCCCGCACGCACGTCCTAGGCCTATTTCGGTCCTT
ACTCCGCCAAGCCGGACGGATGGAGGACTACAACTTTCGTTCCTACGCCC
AGCGCCGCGTGACCATGGCGTTCCAGGAAGGACGTGCACTGAGTGGGGAG
GATGCCGCACGGGAATATCAGGAGGGACTCAAAAACCTGGATATGCTGAA
GAGGCAAGTTCTCATCAGCCACTTGTACCCGTCCAAGCGCTCCGTCATGG
AGACTGAACCGCACAAGGCACCCACCCTGGGCTAG
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Synonyms
Publications