jgi.p|Nanoce1779_2|586123, mRNA_4006 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586123
Unique NamemRNA_4006
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length918
Alignment locationscaffold_8:617063..618114 +

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Properties
Property NameValue
TranscriptId586209
TrackFilteredModels2
ProteinId586123
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:617063..618114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586123gene_4006Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586123mRNA_4006-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4006CDS_4006Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4006 ID=mRNA_4006|Name=jgi.p|Nanoce1779_2|586123|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ACAGAACCCATCACCTCTACAAATATGGCTGGCAAAGGAAAGGCTGGCCG
TGGTGCCGGAAAGAAGGGCGTTTCCCGTTCCTCCAAGGCTGGTCTTCAGT
TCCCCGTGGGCCGTATCTCCCGCTTCCTCAAGAAGGGCCGCTACGCCGCC
CGTGTGGGATCCGGTGCCCCCGTGTATCTGGCTGCCGTCCTCGAGTACTT
GACGGCCGAGATCCTCGAGCTGGCCGGGAACGCCGCCCGTGATAACAAAA
AGTCTCGCATCATCCCCCGCCACGTCCAGCTGGCCGTCCGCAACGACGAG
GAGCTCAACAAGCTGCTTGGCGGTGTGACCATCGCGTCAGGCGGTGTGTT
GCCGAACATTCACTCTGTGCTCTTGCCCAAGAGCAAGGGCAAGAAGGGTG
CCAAGGGCAGTGCCTCCCAGGATTACTAATCGTCCGCTTGTTGGGTGTGC
TCCACAGCCAAAAGTTAACGTCAAAACATAAATCCACCAGCAGAGGCTTT
CTCAAGCCTCACTTTCTCAATGATCTTGCCAATTTTGCTTGTCTTGTTTT
ACCTTTGGATTAATTTAGCTCGCTTCTGTCTCCCTTTCTCAAAATCTGTC
GAAGCGGTTGCTGTGTGCATCGGATTGACCTGAACCGTATGTGCGCTGCA
GGGATATTTTGTGCCATTCAGGTCTTTTGCTTTGGCTGCGTGGTGCCTGG
AGTTGTCGCACGCCGCCGAGTGCTGCACTTGAAGTTAGAAACCAGTGCCC
CCCAAGAGGTCCTCCGCGTACATTCAATTTATAGAGAAAACGCACGCAGT
GAGAAGGGGAAGAAAGCAACCCAAGCCCATGTTATAATATTTTCCCTCGG
TGTATTTCTCTTGTATGTGCGTGTGCTTCGGAGGAAGGAGGACCTTGACC
AACCGACCAATCGTTGGA
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protein sequence of jgi.p|Nanoce1779_2|586123

>mRNA_4006-protein ID=mRNA_4006-protein|Name=jgi.p|Nanoce1779_2|586123|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY*
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mRNA from alignment at scaffold_8:617063..618114+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4006 ID=mRNA_4006|Name=jgi.p|Nanoce1779_2|586123|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp|location=Sequence derived from alignment at scaffold_8:617063..618114+ (Nannochloropsis oceanica)
ACAGAACCCATCACCTCTACAAATATGGCTGGCAAAGGAAAGGCTGGCCG
TGGTGCCGGAAAGAAGGGCGTTTCCCGTTCCTCCAAGGCTGGTCTTCAGT
TCCCCGTGGGCCGTATCTCCCGCTTCCTCAAGAAGGGCCGCTACGCCGCC
CGTGTGGGATCCGGTGCCCCCGTGTATCTGGCTGCCGTCCTCGAGTACTT
GACGGCCGAGATCCTCGAGCTGGCCGGGAACGCCGCCCGTGATAACAAAA
AGTCTCGCATCATCCCCCGCCACGTCCAGCTGGCCGTCCGCAACGACGAG
GAGCTCAACAAGCTGCTTGGCGGTGTGACCATCGCGTCAGGCGGTGTGTT
GCCGAACATTCACTCTGGTACGTCTTGTTTTCTGTCTACCCCTCTAGATT
GGGTGATTTCAACCACTGTCCATAGTTCCTCTATTCCGTATCTTCAAGCC
CATCACTTTTCACGTCCTTCCCGCCATCTATTCCTTCTCACCATTACACA
GTGCTCTTGCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCTC
CCAGGATTACTAATCGTCCGCTTGTTGGGTGTGCTCCACAGCCAAAAGTT
AACGTCAAAACATAAATCCACCAGCAGAGGCTTTCTCAAGCCTCACTTTC
TCAATGATCTTGCCAATTTTGCTTGTCTTGTTTTACCTTTGGATTAATTT
AGCTCGCTTCTGTCTCCCTTTCTCAAAATCTGTCGAAGCGGTTGCTGTGT
GCATCGGATTGACCTGAACCGTATGTGCGCTGCAGGGATATTTTGTGCCA
TTCAGGTCTTTTGCTTTGGCTGCGTGGTGCCTGGAGTTGTCGCACGCCGC
CGAGTGCTGCACTTGAAGTTAGAAACCAGTGCCCCCCAAGAGGTCCTCCG
CGTACATTCAATTTATAGAGAAAACGCACGCAGTGAGAAGGGGAAGAAAG
CAACCCAAGCCCATGTTATAATATTTTCCCTCGGTGTATTTCTCTTGTAT
GTGCGTGTGCTTCGGAGGAAGGAGGACCTTGACCAACCGACCAATCGTTG
GA
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Coding sequence (CDS) from alignment at scaffold_8:617063..618114+

>mRNA_4006 ID=mRNA_4006|Name=jgi.p|Nanoce1779_2|586123|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_8:617063..618114+ (Nannochloropsis oceanica)
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTTTC
CCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTATCTCCCGCT
TCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTGCCCCCGTG
TATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTCGAGCTGGC
CGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCCCCGCCACG
TCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTTGGCGGT
GTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCTGTGCTCTT
GCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCTCCCAGGATT
ACTAAATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGC
GTTTCCCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTATCTC
CCGCTTCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTGCCC
CCGTGTATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTCGAG
CTGGCCGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCCCCG
CCACGTCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTTG
GCGGTGTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCTGTG
CTCTTGCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCTCCCA
GGATTACTAA
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Synonyms
Publications