jgi.p|Nanoce1779_2|586122, mRNA_4005 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586122
Unique Name	mRNA_4005
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2116
Alignment location	scaffold_8:614262..616377 -

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Properties


Property Name	Value
TranscriptId	586208
Track	FilteredModels2
ProteinId	586122

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:614262..616377 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586122	gene_4005	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586122	mRNA_4005-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4005	CDS_4005	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:614262..616377-
coding sequence from alignment at scaffold_8:614262..616377-

mRNA sequence

>mRNA_4005 ID=mRNA_4005|Name=jgi.p|Nanoce1779_2|586122|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp
ACAGACCAACCCTATCTCAATCATGGCCAAGACACCCTCCAAGAAGTCCG
CCAAGGCCCCTAAGAAGGCCGGCAAGGGCACCAAGAAGAAGACCCGCGTG
GAGAGCTACGGCTCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGA
CACTGGTATCTCCAAGCGTGGCGTGTCGATCTTAAATTCCTTCATTGGCG
ACATCTTCGACCGCCTCGCCACTGAGGCCGGCAAGCTGGCCCGCTACACG
AAGAAGTCTACCCTGTCTTCCCGCGAGGTGCAGACAGCTGTCCGCCTCAC
CCTCCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCG
TCACCAAGTACACCTCCAGCTCCTAAACAGTTCTGGAAGTGACTCGTGGC
GAAGCTCACCAAAGCAACAAGACGAGAAAGATATCCAACCAGCAGAGGCC
TTATAAGGCCTCACTCCCGGACTCAAAAGTCGCTCCACGCTTGCTCTCTT
TCATTTTCCTTTATTACAGCCGGCTCTTGAGCCTTAGGAGCCTTTTTCTC
AAAAAGTCGAAAGTGTTACCTCTTTGCCGCGGCAGTCATGCTTAACAAAG
CGAGCACGCGTTCTCTTGATGAAGTCTGTCAGCTTTACTCCTTTCCTCTT
CTCTTCTTAACTGTTACATCCTCACCGCCATCTATGACTCCCCAAAGAGC
GTAGCCTGACGCTGGGCCTTGCCCTCTCCCCATGCAATGTCGACACTCCT
TCCTGCCGCCCCCCTCAACCACGTGCGAATGTAATGCCTCCAGCAACGTG
CTCAACACGTCAGACAGCACTCCTGACTGCAGCTCCTGTAGGTCGACCAA
AGAGACGCTCTCTTCGTCTTCGTTTTCCTCGTTACCAGTAGTACGAAGCA
CAAAATGCGGACGGCTCTGCAGCACAGGTGCAATTAAGCGACGTGCCATC
GGGCAGACGCAGGCTACTGAGGGCGAGGATGACGACAACGAGGAAGTGGG
AAGCAACACGAGGAGACCGGCGCACAGGTGAGATAGCTGTCGACGTAGGT
TCTGGAGGTACTTGATTTGCCGTTGTATCACGCTGGTCCTGCTCGTGGGA
AAGGTGGTCATGGACCACACAGCCGCCAGAGAAAAGATGGGCAATCGTCG
GATGCTTCGAAGGAAGACTAATGCTGGGAATGCTACGCGTCTCAGTCGAA
AGTCCCATTTCGTCAACACTTGACCCGGCAAAACAAATGTTCCCACTTCC
GTACTGCTCGTGTTGCTACTGCCACTGTTACTGCTACTGCTCTTGTTGTC
AGCGCAAAATTTAGTGCAAAAAAGCGCCTGTAAATAGCGACAAGTCATGA
AGTTCTTTTTCTCGAGTAAGCCTTTTAGCAGCCTCTGCCCACACCCACGA
CAGCGCCCTCCTTGACGAGCCCATAGCTCGTCTCGACGCACTGAGGTCAT
GTCAGGCACGGGCTCTGTGCGGAGTCGGATGAGCAGGTCCTCCCTCCGTG
CCCCTGCCTCTTCCTCCGGTTGAAAGGCGGCCCGAAGGACGCATGCGATG
TCTGCTGCTACTCCTGCTGCTTTTGCGGGTCCCTCCTCGACTTTCATCAG
AGCATTCAAGTACTCTTCCAATAATGCCTCTCGCTGCCGCTGCTGCCGCT
GCTGCCGCTGCTTTTGCAGCTGTTGCTGCCGTGAGAAAGAGCCAAACACT
TCACCAAAACTTAAAAAGGCCTCCCCTTGCTCTTCCTTTCCTCGTATCCT
CCTCTCTCTCCTAGCGCTCGCGGGTAAAGACATACCGCCTAAATCGGGCA
GCGTTGGCAAGCTGACATTAAAAGCAGTAGCAGCAGCAGCAGTGACAAAA
GTATCAGCATTAGTCGTCCGCAGGAGCACGTGTTTAAGACGAGCATACAG
GTCCTCTAACCCTGCTCTTGTCTTACGCACCACCCGAACACGATGACGCA
CAAGACGTGGTGTTTTTGCCATGGTCAAATTCCTTTGTCCCCCTTCCCCA
CCACACCACTCTTCCGCCCAACCCTTTTCTTCAGTCTCCACCCTTGTAAA
ACGCACCAAAAACTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCT
CCTCCTCCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|586122

>mRNA_4005-protein ID=mRNA_4005-protein|Name=jgi.p|Nanoce1779_2|586122|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRG
VSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAK
HAVSEGTKAVTKYTSSS*

mRNA from alignment at scaffold_8:614262..616377-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4005 ID=mRNA_4005|Name=jgi.p|Nanoce1779_2|586122|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp|location=Sequence derived from alignment at scaffold_8:614262..616377- (Nannochloropsis oceanica)
ACAGACCAACCCTATCTCAATCATGGCCAAGACACCCTCCAAGAAGTCCG
CCAAGGCCCCTAAGAAGGCCGGCAAGGGCACCAAGAAGAAGACCCGCGTG
GAGAGCTACGGCTCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGA
CACTGGTATCTCCAAGCGTGGCGTGTCGATCTTAAATTCCTTCATTGGCG
ACATCTTCGACCGCCTCGCCACTGAGGCCGGCAAGCTGGCCCGCTACACG
AAGAAGTCTACCCTGTCTTCCCGCGAGGTGCAGACAGCTGTCCGCCTCAC
CCTCCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCG
TCACCAAGTACACCTCCAGCTCCTAAACAGTTCTGGAAGTGACTCGTGGC
GAAGCTCACCAAAGCAACAAGACGAGAAAGATATCCAACCAGCAGAGGCC
TTATAAGGCCTCACTCCCGGACTCAAAAGTCGCTCCACGCTTGCTCTCTT
TCATTTTCCTTTATTACAGCCGGCTCTTGAGCCTTAGGAGCCTTTTTCTC
AAAAAGTCGAAAGTGTTACCTCTTTGCCGCGGCAGTCATGCTTAACAAAG
CGAGCACGCGTTCTCTTGATGAAGTCTGTCAGCTTTACTCCTTTCCTCTT
CTCTTCTTAACTGTTACATCCTCACCGCCATCTATGACTCCCCAAAGAGC
GTAGCCTGACGCTGGGCCTTGCCCTCTCCCCATGCAATGTCGACACTCCT
TCCTGCCGCCCCCCTCAACCACGTGCGAATGTAATGCCTCCAGCAACGTG
CTCAACACGTCAGACAGCACTCCTGACTGCAGCTCCTGTAGGTCGACCAA
AGAGACGCTCTCTTCGTCTTCGTTTTCCTCGTTACCAGTAGTACGAAGCA
CAAAATGCGGACGGCTCTGCAGCACAGGTGCAATTAAGCGACGTGCCATC
GGGCAGACGCAGGCTACTGAGGGCGAGGATGACGACAACGAGGAAGTGGG
AAGCAACACGAGGAGACCGGCGCACAGGTGAGATAGCTGTCGACGTAGGT
TCTGGAGGTACTTGATTTGCCGTTGTATCACGCTGGTCCTGCTCGTGGGA
AAGGTGGTCATGGACCACACAGCCGCCAGAGAAAAGATGGGCAATCGTCG
GATGCTTCGAAGGAAGACTAATGCTGGGAATGCTACGCGTCTCAGTCGAA
AGTCCCATTTCGTCAACACTTGACCCGGCAAAACAAATGTTCCCACTTCC
GTACTGCTCGTGTTGCTACTGCCACTGTTACTGCTACTGCTCTTGTTGTC
AGCGCAAAATTTAGTGCAAAAAAGCGCCTGTAAATAGCGACAAGTCATGA
AGTTCTTTTTCTCGAGTAAGCCTTTTAGCAGCCTCTGCCCACACCCACGA
CAGCGCCCTCCTTGACGAGCCCATAGCTCGTCTCGACGCACTGAGGTCAT
GTCAGGCACGGGCTCTGTGCGGAGTCGGATGAGCAGGTCCTCCCTCCGTG
CCCCTGCCTCTTCCTCCGGTTGAAAGGCGGCCCGAAGGACGCATGCGATG
TCTGCTGCTACTCCTGCTGCTTTTGCGGGTCCCTCCTCGACTTTCATCAG
AGCATTCAAGTACTCTTCCAATAATGCCTCTCGCTGCCGCTGCTGCCGCT
GCTGCCGCTGCTTTTGCAGCTGTTGCTGCCGTGAGAAAGAGCCAAACACT
TCACCAAAACTTAAAAAGGCCTCCCCTTGCTCTTCCTTTCCTCGTATCCT
CCTCTCTCTCCTAGCGCTCGCGGGTAAAGACATACCGCCTAAATCGGGCA
GCGTTGGCAAGCTGACATTAAAAGCAGTAGCAGCAGCAGCAGTGACAAAA
GTATCAGCATTAGTCGTCCGCAGGAGCACGTGTTTAAGACGAGCATACAG
GTCCTCTAACCCTGCTCTTGTCTTACGCACCACCCGAACACGATGACGCA
CAAGACGTGGTGTTTTTGCCATGGTCAAATTCCTTTGTCCCCCTTCCCCA
CCACACCACTCTTCCGCCCAACCCTTTTCTTCAGTCTCCACCCTTGTAAA
ACGCACCAAAAACTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCT
CCTCCTCCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_8:614262..616377-

>mRNA_4005 ID=mRNA_4005|Name=jgi.p|Nanoce1779_2|586122|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_8:614262..616377- (Nannochloropsis oceanica)
ATGGCCAAGACACCCTCCAAGAAGTCCGCCAAGGCCCCTAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTACGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCGATCTTAAATTCCTTCATTGGCGACATCTTCGACCGCCTCGCCAC
TGAGGCCGGCAAGCTGGCCCGCTACACGAAGAAGTCTACCCTGTCTTCCC
GCGAGGTGCAGACAGCTGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCCAGCTC
CTAA

Synonyms

Publications