jgi.p|Nanoce1779_2|554220, mRNA_4004 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554220
Unique Name	mRNA_4004
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2752
Alignment location	scaffold_8:614262..618114 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554306
Track	FilteredModels2
ProteinId	554220

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:614262..618114 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554220	gene_4004	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554220	mRNA_4004-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4004	CDS_4004	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:614262..618114+
coding sequence from alignment at scaffold_8:614262..618114+

mRNA sequence

>mRNA_4004 ID=mRNA_4004|Name=jgi.p|Nanoce1779_2|554220|organism=Nannochloropsis oceanica|type=mRNA|length=2752bp
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGA
GGAGTTTTTGGTGCGTTTTACAAGGGTGGAGACTGAAGAAAAGGGTTGGG
CGGAAGAGTGGTGTGGTGGGGAAGGGGGACAAAGGAATTTGACCATGGCA
AAAACACCACGTCTTGTGCGTCATCGTGTTCGGGTGGTGCGTAAGACAAG
AGCAGGGTTAGAGGACCTGTATGCTCGTCTTAAACACGTGCTCCTGCGGA
CGACTAATGCTGATACTTTTGTCACTGCTGCTGCTGCTACTGCTTTTAAT
GTCAGCTTGCCAACGCTGCCCGATTTAGGCGGTATGTCTTTACCCGCGAG
CGCTAGGAGAGAGAGGAGGATACGAGGAAAGGAAGAGCAAGGGGAGGCCT
TTTTAAGTTTTGGTGAAGTGTTTGGCTCTTTCTCACGGCAGCAACAGCTG
CAAAAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCGAGAGGCATTATTGGA
AGAGTACTTGAATGCTCTGATGAAAGTCGAGGAGGGACCCGCAAAAGCAG
CAGGAGTAGCAGCAGACATCGCATGCGTCCTTCGGGCCGCCTTTCAACCG
GAGGAAGAGGCAGGGGCACGGAGGGAGGACCTGCTCATCCGACTCCGCAC
AGAGCCCGTGCCTGACATGACCTCAGTGCGTCGAGACGAGCTATGGGCTC
GTCAAGGAGGGCGCTGTCGTGGGTGTGGGCAGAGGCTGCTAAAAGGCTTA
CTCGAGAAAAAGAACTTCATGACTTGTCGCTATTTACAGGCGCTTTTTTG
CACTAAATTTTGCGCTGACAACAAGAGCAGTAGCAGTAACAGTGGCAGTA
GCAACACGAGCAGTACGGAAGTGGGAACATTTGTTTTGCCGGGTCAAGTG
TTGACGAAATGGGACTTTCGACTGAGACGCGTAGCATTCCCAGCATTAGT
CTTCCTTCGAAGCATCCGACGATTGCCCATCTTTTCTCTGGCGGCTGTGT
GGTCCATGACCACCTTTCCCACGAGCAGGACCAGCGTGATACAACGGCAA
ATCAAGTACCTCCAGAACCTACGTCGACAGCTATCTCACCTGTGCGCCGG
TCTCCTCGTGTTGCTTCCCACTTCCTCGTTGTCGTCATCCTCGCCCTCAG
TAGCCTGCGTCTGCCCGATGGCACGTCGCTTAATTGCACCTGTGCTGCAG
AGCCGTCCGCATTTTGTGCTTCGTACTACTGGTAACGAGGAAAACGAAGA
CGAAGAGAGCGTCTCTTTGGTCGACCTACAGGAGCTGCAGTCAGGAGTGC
TGTCTGACGTGTTGAGCACGTTGCTGGAGGCATTACATTCGCACGTGGTT
GAGGGGGGCGGCAGGAAGGAGTGTCGACATTGCATGGGGAGAGGGCAAGG
CCCAGCGTCAGGCTACGCTCTTTGGGGAGTCATAGATGGCGGTGAGGATG
TAACAGTTAAGAAGAGAAGAGGAAAGGAGTAAAGCTGACAGACTTCATCA
AGAGAACGCGTGCTCGCTTTGTTAAGCATGACTGCCGCGGCAAAGAGGTA
ACACTTTCGACTTTTTGAGAAAAAGGCTCCTAAGGCTCAAGAGCCGGCTG
TAATAAAGGAAAATGAAAGAGAGCAAGCGTGGAGCGACTTTTGAGTCCGG
GAGTGAGGCCTTATAAGGCCTCTGCTGGTTGGATATCTTTCTCGTCTTGT
TGCTTTGGTGAGCTTCGCCACGAGTCACTTCCAGAACTGTTTAGGAGCTG
GAGGTGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGC
CAGCTCACCGGGGAGGGTGAGGCGGACAGCTGTCTGCACCTCGCGGGAAG
ACAGGGTAGACTTCTTCGTGTATTGGGCTGGCCGTGGTGCCGGAAAGAAG
GGCGTTTCCCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTAT
CTCCCGCTTCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTG
CCCCCGTGTATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTC
GAGCTGGCCGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCC
CCGCCACGTCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGC
TTGGCGGTGTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCT
GTGCTCTTGCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCTC
CCAGGATTACTAATCGTCCGCTTGTTGGGTGTGCTCCACAGCCAAAAGTT
AACGTCAAAACATAAATCCACCAGCAGAGGCTTTCTCAAGCCTCACTTTC
TCAATGATCTTGCCAATTTTGCTTGTCTTGTTTTACCTTTGGATTAATTT
AGCTCGCTTCTGTCTCCCTTTCTCAAAATCTGTCGAAGCGGTTGCTGTGT
GCATCGGATTGACCTGAACCGTATGTGCGCTGCAGGGATATTTTGTGCCA
TTCAGGTCTTTTGCTTTGGCTGCGTGGTGCCTGGAGTTGTCGCACGCCGC
CGAGTGCTGCACTTGAAGTTAGAAACCAGTGCCCCCCAAGAGGTCCTCCG
CGTACATTCAATTTATAGAGAAAACGCACGCAGTGAGAAGGGGAAGAAAG
CAACCCAAGCCCATGTTATAATATTTTCCCTCGGTGTATTTCTCTTGTAT
GTGCGTGTGCTTCGGAGGAAGGAGGACCTTGACCAACCGACCAATCGTTG
GA

protein sequence of jgi.p|Nanoce1779_2|554220

>mRNA_4004-protein ID=mRNA_4004-protein|Name=jgi.p|Nanoce1779_2|554220|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MAKTPRLVRHRVRVVRKTRAGLEDLYARLKHVLLRTTNADTFVTAAAATA
FNVSLPTLPDLGGMSLPASARRERRIRGKEEQGEAFLSFGEVFGSFSRQQ
QLQKQRQQRQQRQREALLEEYLNALMKVEEGPAKAAGVAADIACVLRAAF
QPEEEAGARREDLLIRLRTEPVPDMTSVRRDELWARQGGRCRGCGQRLLK
GLLEKKNFMTCRYLQALFCTKFCADNKSSSSNSGSSNTSSTEVGTFVLPG
QVLTKWDFRLRRVAFPALVFLRSIRRLPIFSLAAVWSMTTFPTSRTSVIQ
RQIKYLQNLRRQLSHLCAGLLVLLPTSSLSSSSPSVACVCPMARRLIAPV
LQSRPHFVLRTTGNEENEDEESVSLVDLQELQSGVLSDVLSTLLEALHSH
VVEGGGRKECRHCMGRGQGPASGYALWGVIDGGEDVTVKKRRGKE*

mRNA from alignment at scaffold_8:614262..618114+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4004 ID=mRNA_4004|Name=jgi.p|Nanoce1779_2|554220|organism=Nannochloropsis oceanica|type=mRNA|length=3853bp|location=Sequence derived from alignment at scaffold_8:614262..618114+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGA
GGAGTTTTTGGTGCGTTTTACAAGGGTGGAGACTGAAGAAAAGGGTTGGG
CGGAAGAGTGGTGTGGTGGGGAAGGGGGACAAAGGAATTTGACCATGGCA
AAAACACCACGTCTTGTGCGTCATCGTGTTCGGGTGGTGCGTAAGACAAG
AGCAGGGTTAGAGGACCTGTATGCTCGTCTTAAACACGTGCTCCTGCGGA
CGACTAATGCTGATACTTTTGTCACTGCTGCTGCTGCTACTGCTTTTAAT
GTCAGCTTGCCAACGCTGCCCGATTTAGGCGGTATGTCTTTACCCGCGAG
CGCTAGGAGAGAGAGGAGGATACGAGGAAAGGAAGAGCAAGGGGAGGCCT
TTTTAAGTTTTGGTGAAGTGTTTGGCTCTTTCTCACGGCAGCAACAGCTG
CAAAAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCGAGAGGCATTATTGGA
AGAGTACTTGAATGCTCTGATGAAAGTCGAGGAGGGACCCGCAAAAGCAG
CAGGAGTAGCAGCAGACATCGCATGCGTCCTTCGGGCCGCCTTTCAACCG
GAGGAAGAGGCAGGGGCACGGAGGGAGGACCTGCTCATCCGACTCCGCAC
AGAGCCCGTGCCTGACATGACCTCAGTGCGTCGAGACGAGCTATGGGCTC
GTCAAGGAGGGCGCTGTCGTGGGTGTGGGCAGAGGCTGCTAAAAGGCTTA
CTCGAGAAAAAGAACTTCATGACTTGTCGCTATTTACAGGCGCTTTTTTG
CACTAAATTTTGCGCTGACAACAAGAGCAGTAGCAGTAACAGTGGCAGTA
GCAACACGAGCAGTACGGAAGTGGGAACATTTGTTTTGCCGGGTCAAGTG
TTGACGAAATGGGACTTTCGACTGAGACGCGTAGCATTCCCAGCATTAGT
CTTCCTTCGAAGCATCCGACGATTGCCCATCTTTTCTCTGGCGGCTGTGT
GGTCCATGACCACCTTTCCCACGAGCAGGACCAGCGTGATACAACGGCAA
ATCAAGTACCTCCAGAACCTACGTCGACAGCTATCTCACCTGTGCGCCGG
TCTCCTCGTGTTGCTTCCCACTTCCTCGTTGTCGTCATCCTCGCCCTCAG
TAGCCTGCGTCTGCCCGATGGCACGTCGCTTAATTGCACCTGTGCTGCAG
AGCCGTCCGCATTTTGTGCTTCGTACTACTGGTAACGAGGAAAACGAAGA
CGAAGAGAGCGTCTCTTTGGTCGACCTACAGGAGCTGCAGTCAGGAGTGC
TGTCTGACGTGTTGAGCACGTTGCTGGAGGCATTACATTCGCACGTGGTT
GAGGGGGGCGGCAGGAAGGAGTGTCGACATTGCATGGGGAGAGGGCAAGG
CCCAGCGTCAGGCTACGCTCTTTGGGGAGTCATAGATGGCGGTGAGGATG
TAACAGTTAAGAAGAGAAGAGGAAAGGAGTAAAGCTGACAGACTTCATCA
AGAGAACGCGTGCTCGCTTTGTTAAGCATGACTGCCGCGGCAAAGAGGTA
ACACTTTCGACTTTTTGAGAAAAAGGCTCCTAAGGCTCAAGAGCCGGCTG
TAATAAAGGAAAATGAAAGAGAGCAAGCGTGGAGCGACTTTTGAGTCCGG
GAGTGAGGCCTTATAAGGCCTCTGCTGGTTGGATATCTTTCTCGTCTTGT
TGCTTTGGTGAGCTTCGCCACGAGTCACTTCCAGAACTGTTTAGGAGCTG
GAGGTGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGC
CAGCTCACCGGGGAGGGTGAGGCGGACAGCTGTCTGCACCTCGCGGGAAG
ACAGGGTAGACTTCTTCGTGTAGCGGGCCAGCTTGCCGGCCTCAGTGGCG
AGGCGGTCGAAGATGTCGCCAATGAAGGAATTTAAGATCGACACGCCACG
CTTGGAGATACCAGTGTCGGGGTGCACCTGCTTGAGGACCTTGTAGATGT
AGGAGCCGTAGCTCTCCACGCGGGTCTTCTTCTTGGTGCCCTTGCCGGCC
TTCTTAGGGGCCTTGGCGGACTTCTTGGAGGGTGTCTTGGCCATGATTGA
GATAGGGTTGGTCTGTGCGGAGTGGATGAGGAAGTGGGAGAGTGAGACGT
GGTGGTCGTGTCGATGTCGTAGGGGCGTGAGTCTCATTTTCCCGCCTTGT
CCGCAGAGAATGGGCAGTTGTGGAGCGCGTGAGCGTGGGGTGTTGAGTCA
GTTGTGGTGTATGGTTAAGGGGTACAATTACGGTGTGGTGATGACAAACA
TTTGGCCTGAACGCCACATGCATGCATCACAAACGAAAGGTGGGTGAGAA
GGAGAAGACAGACACAAGTGACTGCGCGGAGTGAACGCAAGAACCCTCGA
AGTGGTTATTTGTCTCGTGAGGAAAATGGTGCTCTCCGATTGGCCATTTC
TCAAATCCTTTGAAATTGAATGACGCCACTCTGATCTTTAGGCCAATCAT
AGCCTTCAAAAAGAAGAAGGTATTGGGTTTTCGATTCACCATTGCAGAGA
GCCTTTTTTAAGAGACCCGTTGCTCAATTCACTTGACGGGGTGTATGTGT
GTACGGTTGTACGATTTGGCAACATGAATACTAGTCAGGACTTGCGTAGG
AGGCCAACAATTTCAAGATCACTCCTATCAACACTCCGCTTTCCTCCCTT
CCGCGCATCGTACGTTTACGCACCAACCCTACCCCACATCACAACACAAC
ACCAGCCCTTACCCTCCGCCTTCTCCCCACTCTCCTACCTTCCATCCCAT
CACAGAACCCATCACCTCTACAAATATGGCTGGCAAAGGAAAGGCTGGCC
GTGGTGCCGGAAAGAAGGGCGTTTCCCGTTCCTCCAAGGCTGGTCTTCAG
TTCCCCGTGGGCCGTATCTCCCGCTTCCTCAAGAAGGGCCGCTACGCCGC
CCGTGTGGGATCCGGTGCCCCCGTGTATCTGGCTGCCGTCCTCGAGTACT
TGACGGCCGAGATCCTCGAGCTGGCCGGGAACGCCGCCCGTGATAACAAA
AAGTCTCGCATCATCCCCCGCCACGTCCAGCTGGCCGTCCGCAACGACGA
GGAGCTCAACAAGCTGCTTGGCGGTGTGACCATCGCGTCAGGCGGTGTGT
TGCCGAACATTCACTCTGGTACGTCTTGTTTTCTGTCTACCCCTCTAGAT
TGGGTGATTTCAACCACTGTCCATAGTTCCTCTATTCCGTATCTTCAAGC
CCATCACTTTTCACGTCCTTCCCGCCATCTATTCCTTCTCACCATTACAC
AGTGCTCTTGCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCT
CCCAGGATTACTAATCGTCCGCTTGTTGGGTGTGCTCCACAGCCAAAAGT
TAACGTCAAAACATAAATCCACCAGCAGAGGCTTTCTCAAGCCTCACTTT
CTCAATGATCTTGCCAATTTTGCTTGTCTTGTTTTACCTTTGGATTAATT
TAGCTCGCTTCTGTCTCCCTTTCTCAAAATCTGTCGAAGCGGTTGCTGTG
TGCATCGGATTGACCTGAACCGTATGTGCGCTGCAGGGATATTTTGTGCC
ATTCAGGTCTTTTGCTTTGGCTGCGTGGTGCCTGGAGTTGTCGCACGCCG
CCGAGTGCTGCACTTGAAGTTAGAAACCAGTGCCCCCCAAGAGGTCCTCC
GCGTACATTCAATTTATAGAGAAAACGCACGCAGTGAGAAGGGGAAGAAA
GCAACCCAAGCCCATGTTATAATATTTTCCCTCGGTGTATTTCTCTTGTA
TGTGCGTGTGCTTCGGAGGAAGGAGGACCTTGACCAACCGACCAATCGTT
GGA

Coding sequence (CDS) from alignment at scaffold_8:614262..618114+

>mRNA_4004 ID=mRNA_4004|Name=jgi.p|Nanoce1779_2|554220|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_8:614262..618114+ (Nannochloropsis oceanica)
ATGGCAAAAACACCACGTCTTGTGCGTCATCGTGTTCGGGTGGTGCGTAA
GACAAGAGCAGGGTTAGAGGACCTGTATGCTCGTCTTAAACACGTGCTCC
TGCGGACGACTAATGCTGATACTTTTGTCACTGCTGCTGCTGCTACTGCT
TTTAATGTCAGCTTGCCAACGCTGCCCGATTTAGGCGGTATGTCTTTACC
CGCGAGCGCTAGGAGAGAGAGGAGGATACGAGGAAAGGAAGAGCAAGGGG
AGGCCTTTTTAAGTTTTGGTGAAGTGTTTGGCTCTTTCTCACGGCAGCAA
CAGCTGCAAAAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCGAGAGGCATT
ATTGGAAGAGTACTTGAATGCTCTGATGAAAGTCGAGGAGGGACCCGCAA
AAGCAGCAGGAGTAGCAGCAGACATCGCATGCGTCCTTCGGGCCGCCTTT
CAACCGGAGGAAGAGGCAGGGGCACGGAGGGAGGACCTGCTCATCCGACT
CCGCACAGAGCCCGTGCCTGACATGACCTCAGTGCGTCGAGACGAGCTAT
GGGCTCGTCAAGGAGGGCGCTGTCGTGGGTGTGGGCAGAGGCTGCTAAAA
GGCTTACTCGAGAAAAAGAACTTCATGACTTGTCGCTATTTACAGGCGCT
TTTTTGCACTAAATTTTGCGCTGACAACAAGAGCAGTAGCAGTAACAGTG
GCAGTAGCAACACGAGCAGTACGGAAGTGGGAACATTTGTTTTGCCGGGT
CAAGTGTTGACGAAATGGGACTTTCGACTGAGACGCGTAGCATTCCCAGC
ATTAGTCTTCCTTCGAAGCATCCGACGATTGCCCATCTTTTCTCTGGCGG
CTGTGTGGTCCATGACCACCTTTCCCACGAGCAGGACCAGCGTGATACAA
CGGCAAATCAAGTACCTCCAGAACCTACGTCGACAGCTATCTCACCTGTG
CGCCGGTCTCCTCGTGTTGCTTCCCACTTCCTCGTTGTCGTCATCCTCGC
CCTCAGTAGCCTGCGTCTGCCCGATGGCACGTCGCTTAATTGCACCTGTG
CTGCAGAGCCGTCCGCATTTTGTGCTTCGTACTACTGGTAACGAGGAAAA
CGAAGACGAAGAGAGCGTCTCTTTGGTCGACCTACAGGAGCTGCAGTCAG
GAGTGCTGTCTGACGTGTTGAGCACGTTGCTGGAGGCATTACATTCGCAC
GTGGTTGAGGGGGGCGGCAGGAAGGAGTGTCGACATTGCATGGGGAGAGG
GCAAGGCCCAGCGTCAGGCTACGCTCTTTGGGGAGTCATAGATGGCGGTG
AGGATGTAACAGTTAAGAAGAGAAGAGGAAAGGAGTAA

Synonyms

Publications