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Properties
| Property Name | Value |
|---|
| TranscriptId | 554301 |
| Track | FilteredModels2 |
| ProteinId | 554215 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:609366..611010 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4003 ID=mRNA_4003|Name=jgi.p|Nanoce1779_2|554215|organism=Nannochloropsis oceanica|type=mRNA|length=880bp
GTAAAGGCAGGCATGATGATGAAAGGGAACCTGCTGCCGTCGAACGATGC
CCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGCAGGG
CTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCATGTA
CTTCTTTACGAGTAGCGAGGGCTACGTGTTGTACATGGGGAAAGACAAGT
ATGAAAACGAGGAGCTGATTCGTTTTGGACTTCCAGAAGACGTGTGGTTT
CACGTTGATGACTTGTCTTCAGCGCACGTATACTTGCGGCAGAAGCCGGG
GGAAAAGCTAGATGATATAAGTCCCGACTTGCTACTGGAGTGTGCCTCCC
TCGTCAAGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCAGGTG
GTATACACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGAGGCGGG
CCAGATCGGCTTTCATGACCAAAGCAAGGTTCGAAAAATTAAAGTCGAGA
AATGCAACTCTATCGTGAATGCCCTCAATAGGACCAAAGAGGAACGTTTC
CCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCAGCTGAGTACCGGGCAGT
GCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGAGGAAAGAGAAGAGAGAA
AAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGAGCTTGATGAAG
GACGACAGGATGGAATCCAACAAGAAGAACGTGGCGGACGTGGCAGAGTT
GGAGGAAGACTTTATGTAAGAATATCGAGTGGGTAGAAAGGAAAAGGCTG
GTGAAGATAAAATATGAAAAGTATTCGCAAAACTGATGCTGGGAATCGTG
ACTTTTGTTTCTTTTGCTGGTGGTCACTTG back to topprotein sequence of jgi.p|Nanoce1779_2|554215 >mRNA_4003-protein ID=mRNA_4003-protein|Name=jgi.p|Nanoce1779_2|554215|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MPSILPPTPSIGPHVTAGLFSRGSGNSSCSTGSMYFFTSSEGYVLYMGKD
KYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGEKLDDISPDLLLECA
SLVKANSIEGCKKKEVQVVYTRWRNLKKTKSMEAGQIGFHDQSKVRKIKV
EKCNSIVNALNRTKEERFPDLQAEQEVRAAEYRAVQKSLKRGQEREEREE
RKRQEEEAKLRSYESLMKDDRMESNKKNVADVAELEEDFM* back to topmRNA from alignment at scaffold_8:609366..611010- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4003 ID=mRNA_4003|Name=jgi.p|Nanoce1779_2|554215|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at scaffold_8:609366..611010- (Nannochloropsis oceanica)
GTAAAGGCAGGCATGATGATGAAAGGGAACCTGCTGCCGTCGAACGATGC
CCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGCAGGG
CTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCATGTA
CTTCTTTACGAGTAGCGGTAAGTGCCTCCTATTCATCGTGGGTTTGTGTG
TGGCTGCCGGACTTATGGTCTCATTTCATGTCCACATCACTTTCCAACTC
GCGCATCCCATCCTCGTCTTCGTCCATTCGGTGCACCATACAGAGGGCTA
CGTGTTGTACATGGGGGTAAGTCATGAAGGCAAAGAAGAAAAAGTCGTGA
ATGGGATTGTGATTCCTTTGAGCGGCTCGTGGCATCTTATTGTCTACATG
CCTAAGTGATCCCTCCTCCCTCGTTCCCTCGTTTCCCACCCATGGTTTTG
ACAGAAAGACAAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTTCCAG
AAGACGTGTGGTTTCACGTTGATGACTTGTCTTCAGCGCACGTATACTTG
CGGCAGAAGCCGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGCTACT
GGAGTGTGCCTCCCTCGTCAAGGTACGCGACCCTCATACACGCGTAAAGA
AAAAGACGGGATGACTACGAGGCAATGTGAGAAGAAAAAATTCATTAGTA
GCTTTCCAAATCGCCTCATCTCGCAATATTTTGTCAGTATAGGCCAATTC
GATCGAGGGCTGCAAAAAGAAGGAAGTGCAGGTGGTATACACGAGGTGGC
GAAATCTGAAGAAGACCAAGAGCATGGAGGCGGGCCAGATCGGCTTTCAT
GACCAAAGCAAGGTGATATTTGGTTACTTGTGTATGCAAACGTATGTGTA
AGTGGCCACCATTTCACTTACATGTACTCTCATCCTTTTTTGGAGGGCAG
GTTCGAAAAATTAAAGTCGAGAAATGCAACTCTATCGTGAATGCCCTCAA
TAGGACCAAAGAGGTAAGCCACATGTGATTTTCAATTAAATTGCTTTCTA
GATTCCGAGTGAGATCACTAATCACACATCCACAAAAAAAACTCACGCCC
TTGGATTTAATTCCTCGCAAAGGAACGTTTCCCTGACCTGCAAGCGGAGC
AAGAAGTCCGGGCAGCTGAGTACCGGGCAGTGCAAAAAAGCTTGAAGCGA
GGGCAGGAAAGAGAGGTAAAAGCACAGGAAAATTTCGAATATAAGAAGAT
ATGATTTTTACTCCTTCTTATGTCACACATTCAATAGGAAAGAGAAGAGA
GAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGTAAGTGCGA
GTGGATTATGTTGGGCGAGGGGATGAACTGGAGAGGGGATTTTAGCCTTT
ACCGGGATGACATTTTCTTCTTTCGCTTACCAAGTATCTTGTCAATTCTC
AGGAGCTTGATGAAGGACGACAGGATGGAATCCAACAAGAAGAACGTGGC
GGACGTGGCAGAGTTGGAGGAAGACTTTATGTAAGAATATCGAGTGGGTA
GAAAGGAAAAGGCTGGTGAAGATAAAATATGAAAAGTATTCGCAAAACTG
ATGCTGGGAATCGTGACTTTTGTTTCTTTTGCTGGTGGTCACTTG back to topCoding sequence (CDS) from alignment at scaffold_8:609366..611010- >mRNA_4003 ID=mRNA_4003|Name=jgi.p|Nanoce1779_2|554215|organism=Nannochloropsis oceanica|type=CDS|length=5784bp|location=Sequence derived from alignment at scaffold_8:609366..611010- (Nannochloropsis oceanica)
GAGCTTGATGAAGGACGACAGGATGGAATCCAACAAGAAGAACGTGGCGG
ACGTGGCAGAGTTGGAGGAAGACTTTATGTAAGAAAGAGAAGAGAGAAAA
AGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGAACGTTTCCCTGAC
CTGCAAGCGGAGCAAGAAGTCCGGGCAGCTGAGTACCGGGCAGTGCAAAA
AAGCTTGAAGCGAGGGCAGGAAAGAGAGGTTCGAAAAATTAAAGTCGAGA
AATGCAACTCTATCGTGAATGCCCTCAATAGGACCAAAGAGGCCAATTCG
ATCGAGGGCTGCAAAAAGAAGGAAGTGCAGGTGGTATACACGAGGTGGCG
AAATCTGAAGAAGACCAAGAGCATGGAGGCGGGCCAGATCGGCTTTCATG
ACCAAAGCAAGAAAGACAAGTATGAAAACGAGGAGCTGATTCGTTTTGGA
CTTCCAGAAGACGTGTGGTTTCACGTTGATGACTTGTCTTCAGCGCACGT
ATACTTGCGGCAGAAGCCGGGGGAAAAGCTAGATGATATAAGTCCCGACT
TGCTACTGGAGTGTGCCTCCCTCGTCAAGAGGGCTACGTGTTGTACATGG
GGATGCCCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACG
GCAGGGCTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAG
CATGTACTTCTTTACGAGTAGCGGAGCTTGATGAAGGACGACAGGATGGA
ATCCAACAAGAAGAACGTGGCGGACGTGGCAGAGTTGGAGGAAGACTTTA
TGTAAGAAAGAGAAGAGAGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGA
AGCTACGAGAACGTTTCCCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCA
GCTGAGTACCGGGCAGTGCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGA
GGTTCGAAAAATTAAAGTCGAGAAATGCAACTCTATCGTGAATGCCCTCA
ATAGGACCAAAGAGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTG
CAGGTGGTATACACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGA
GGCGGGCCAGATCGGCTTTCATGACCAAAGCAAGAAAGACAAGTATGAAA
ACGAGGAGCTGATTCGTTTTGGACTTCCAGAAGACGTGTGGTTTCACGTT
GATGACTTGTCTTCAGCGCACGTATACTTGCGGCAGAAGCCGGGGGAAAA
GCTAGATGATATAAGTCCCGACTTGCTACTGGAGTGTGCCTCCCTCGTCA
AGAGGGCTACGTGTTGTACATGGGGATGCCCTCAATCCTCCCCCCCACCC
CCTCTATCGGCCCCCACGTCACGGCAGGGCTCTTCAGCAGGGGCAGCGGA
AACAGCAGCTGCAGTACTGGCAGCATGTACTTCTTTACGAGTAGCGGAGC
TTGATGAAGGACGACAGGATGGAATCCAACAAGAAGAACGTGGCGGACGT
GGCAGAGTTGGAGGAAGACTTTATGTAAGAAAGAGAAGAGAGAAAAAGGC
AGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGAACGTTTCCCTGACCTGC
AAGCGGAGCAAGAAGTCCGGGCAGCTGAGTACCGGGCAGTGCAAAAAAGC
TTGAAGCGAGGGCAGGAAAGAGAGGTTCGAAAAATTAAAGTCGAGAAATG
CAACTCTATCGTGAATGCCCTCAATAGGACCAAAGAGGCCAATTCGATCG
AGGGCTGCAAAAAGAAGGAAGTGCAGGTGGTATACACGAGGTGGCGAAAT
CTGAAGAAGACCAAGAGCATGGAGGCGGGCCAGATCGGCTTTCATGACCA
AAGCAAGAAAGACAAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTTC
CAGAAGACGTGTGGTTTCACGTTGATGACTTGTCTTCAGCGCACGTATAC
TTGCGGCAGAAGCCGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGCT
ACTGGAGTGTGCCTCCCTCGTCAAGAGGGCTACGTGTTGTACATGGGGAT
GCCCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGCAG
GGCTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCATG
TACTTCTTTACGAGTAGCGGAGCTTGATGAAGGACGACAGGATGGAATCC
AACAAGAAGAACGTGGCGGACGTGGCAGAGTTGGAGGAAGACTTTATGTA
AGAAAGAGAAGAGAGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCT
ACGAGAACGTTTCCCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCAGCTG
AGTACCGGGCAGTGCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGAGGTT
CGAAAAATTAAAGTCGAGAAATGCAACTCTATCGTGAATGCCCTCAATAG
GACCAAAGAGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCAGG
TGGTATACACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGAGGCG
GGCCAGATCGGCTTTCATGACCAAAGCAAGAAAGACAAGTATGAAAACGA
GGAGCTGATTCGTTTTGGACTTCCAGAAGACGTGTGGTTTCACGTTGATG
ACTTGTCTTCAGCGCACGTATACTTGCGGCAGAAGCCGGGGGAAAAGCTA
GATGATATAAGTCCCGACTTGCTACTGGAGTGTGCCTCCCTCGTCAAGAG
GGCTACGTGTTGTACATGGGGATGCCCTCAATCCTCCCCCCCACCCCCTC
TATCGGCCCCCACGTCACGGCAGGGCTCTTCAGCAGGGGCAGCGGAAACA
GCAGCTGCAGTACTGGCAGCATGTACTTCTTTACGAGTAGCGGAGCTTGA
TGAAGGACGACAGGATGGAATCCAACAAGAAGAACGTGGCGGACGTGGCA
GAGTTGGAGGAAGACTTTATGTAAGAAAGAGAAGAGAGAAAAAGGCAGGA
GGAGGAGGCCAAGCTGCGAAGCTACGAGAACGTTTCCCTGACCTGCAAGC
GGAGCAAGAAGTCCGGGCAGCTGAGTACCGGGCAGTGCAAAAAAGCTTGA
AGCGAGGGCAGGAAAGAGAGGTTCGAAAAATTAAAGTCGAGAAATGCAAC
TCTATCGTGAATGCCCTCAATAGGACCAAAGAGGCCAATTCGATCGAGGG
CTGCAAAAAGAAGGAAGTGCAGGTGGTATACACGAGGTGGCGAAATCTGA
AGAAGACCAAGAGCATGGAGGCGGGCCAGATCGGCTTTCATGACCAAAGC
AAGAAAGACAAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTTCCAGA
AGACGTGTGGTTTCACGTTGATGACTTGTCTTCAGCGCACGTATACTTGC
GGCAGAAGCCGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGCTACTG
GAGTGTGCCTCCCTCGTCAAGAGGGCTACGTGTTGTACATGGGGATGCCC
TCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGCAGGGCT
CTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCATGTACT
TCTTTACGAGTAGCGGAGCTTGATGAAGGACGACAGGATGGAATCCAACA
AGAAGAACGTGGCGGACGTGGCAGAGTTGGAGGAAGACTTTATGTAAGAA
AGAGAAGAGAGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGA
GAACGTTTCCCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCAGCTGAGTA
CCGGGCAGTGCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGAGGTTCGAA
AAATTAAAGTCGAGAAATGCAACTCTATCGTGAATGCCCTCAATAGGACC
AAAGAGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCAGGTGGT
ATACACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGAGGCGGGCC
AGATCGGCTTTCATGACCAAAGCAAGAAAGACAAGTATGAAAACGAGGAG
CTGATTCGTTTTGGACTTCCAGAAGACGTGTGGTTTCACGTTGATGACTT
GTCTTCAGCGCACGTATACTTGCGGCAGAAGCCGGGGGAAAAGCTAGATG
ATATAAGTCCCGACTTGCTACTGGAGTGTGCCTCCCTCGTCAAGAGGGCT
ACGTGTTGTACATGGGGATGCCCTCAATCCTCCCCCCCACCCCCTCTATC
GGCCCCCACGTCACGGCAGGGCTCTTCAGCAGGGGCAGCGGAAACAGCAG
CTGCAGTACTGGCAGCATGTACTTCTTTACGAGTAGCGGAGCTTGATGAA
GGACGACAGGATGGAATCCAACAAGAAGAACGTGGCGGACGTGGCAGAGT
TGGAGGAAGACTTTATGTAAGAAAGAGAAGAGAGAAAAAGGCAGGAGGAG
GAGGCCAAGCTGCGAAGCTACGAGAACGTTTCCCTGACCTGCAAGCGGAG
CAAGAAGTCCGGGCAGCTGAGTACCGGGCAGTGCAAAAAAGCTTGAAGCG
AGGGCAGGAAAGAGAGGTTCGAAAAATTAAAGTCGAGAAATGCAACTCTA
TCGTGAATGCCCTCAATAGGACCAAAGAGGCCAATTCGATCGAGGGCTGC
AAAAAGAAGGAAGTGCAGGTGGTATACACGAGGTGGCGAAATCTGAAGAA
GACCAAGAGCATGGAGGCGGGCCAGATCGGCTTTCATGACCAAAGCAAGA
AAGACAAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTTCCAGAAGAC
GTGTGGTTTCACGTTGATGACTTGTCTTCAGCGCACGTATACTTGCGGCA
GAAGCCGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGCTACTGGAGT
GTGCCTCCCTCGTCAAGAGGGCTACGTGTTGTACATGGGGATGCCCTCAA
TCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGCAGGGCTCTTC
AGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCATGTACTTCTT
TACGAGTAGCGGAGCTTGATGAAGGACGACAGGATGGAATCCAACAAGAA
GAACGTGGCGGACGTGGCAGAGTTGGAGGAAGACTTTATGTAAGAAAGAG
AAGAGAGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGAAC
GTTTCCCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCAGCTGAGTACCGG
GCAGTGCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGAGGTTCGAAAAAT
TAAAGTCGAGAAATGCAACTCTATCGTGAATGCCCTCAATAGGACCAAAG
AGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCAGGTGGTATAC
ACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGAGGCGGGCCAGAT
CGGCTTTCATGACCAAAGCAAGAAAGACAAGTATGAAAACGAGGAGCTGA
TTCGTTTTGGACTTCCAGAAGACGTGTGGTTTCACGTTGATGACTTGTCT
TCAGCGCACGTATACTTGCGGCAGAAGCCGGGGGAAAAGCTAGATGATAT
AAGTCCCGACTTGCTACTGGAGTGTGCCTCCCTCGTCAAGAGGGCTACGT
GTTGTACATGGGGATGCCCTCAATCCTCCCCCCCACCCCCTCTATCGGCC
CCCACGTCACGGCAGGGCTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGC
AGTACTGGCAGCATGTACTTCTTTACGAGTAGCG back to top
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