jgi.p|Nanoce1779_2|586098, mRNA_4001 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586098
Unique NamemRNA_4001
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1115
Alignment locationscaffold_8:604643..605913 +

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Properties
Property NameValue
TranscriptId586184
TrackFilteredModels2
ProteinId586098
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:604643..605913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586098gene_4001Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586098mRNA_4001-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4001CDS_4001Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4001 ID=mRNA_4001|Name=jgi.p|Nanoce1779_2|586098|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp
GTGCAATTGCTCCAGGATCGTGAGCACCTCCAGGATTTGGTCCCATCCCG
CGTTGCACAGCTAGGACGATCACTAGCCAAAAGATGCGTTTGGTTCAGAT
GGGGGAAATAGTGGTGGTGTGTACCAAGGACTTGGGTTGGAAGAATGGGC
CAGAAGCAACGTCAACGGTCGCTCAGGCTGCATCAGTCCAAGCCCGGCCT
CTTATCTTGCCTTCCCTACACACACAGACATCTAAGCTTTTTAAAATACC
AAATGGAGCCCCCATTTCAAGTCGAGGACTTTTCGGACTCCTCAGCGGAA
GGCAAGTAATCCCCACCGATCTAAACCCAGCATCATCCAGCCTCGTTCCC
TCCTCACCCCCCAAAATAAATATCCTTCCTCCCGTGCATGATTTACACAG
AGGACCATGAGGCCGTAGACGAGTTGTACGACGAAAACGCGGACGAAGAG
GATGAGAAATGGATTATCAAGCACTGGCGCCAAGGACAAGCCTTGCCAAT
TCAACAAAGAAGTGCAACGGCGGCACGCTCGACGGATGCCGTCCTGAATT
GCCCGTGCTGCTTCACTACTGTGTGCATGGAATGCCAAAGGCATGCCATT
TACAAGACACAATACCGGGCTATGTTTATTATAAATTGCAGGGTTAAGAC
AAATGAAAATTTAAGCGATACGCGGAAGGAAGAGGAATACGCACGTGAGG
AAGTCGAGGCCGAAACCACACCATTTACACAATCAATACCACCAGCAGCA
CATGGAGAAGAAGGCACCCGCGACTCCGACAAACAGCAACGTCAACATGA
TCAGCAGCAAAATAAGAAGGGAGTGCGCTGGAACGACATCCTTGACGGGG
AAGCTCCAGTGCGTGCGGTGGAATGCGAGACGTGTGGTACGGTAGTGGGT
GTGCAGGATGAAGACGAGGTCACACATTTTTTTAATGTAATTGCTTCATG
AAGCGTGAGGGGGGAAAACAATGAAGATTAATAAAAGTAGAAAAAGAAGA
AAACAGGATGAAGGCATTTATAAGATATCTGTACATAAATTACCATTGAA
ATATTGAAAATACATTAGAGATAAAGACATATGGGTGTACAACACACAAC
GTCGTCCTCGACTGA
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protein sequence of jgi.p|Nanoce1779_2|586098

>mRNA_4001-protein ID=mRNA_4001-protein|Name=jgi.p|Nanoce1779_2|586098|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MIYTEDHEAVDELYDENADEEDEKWIIKHWRQGQALPIQQRSATAARSTD
AVLNCPCCFTTVCMECQRHAIYKTQYRAMFIINCRVKTNENLSDTRKEEE
YAREEVEAETTPFTQSIPPAAHGEEGTRDSDKQQRQHDQQQNKKGVRWND
ILDGEAPVRAVECETCGTVVGVQDEDEVTHFFNVIAS*
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mRNA from alignment at scaffold_8:604643..605913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4001 ID=mRNA_4001|Name=jgi.p|Nanoce1779_2|586098|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp|location=Sequence derived from alignment at scaffold_8:604643..605913+ (Nannochloropsis oceanica)
GTGCAATTGCTCCAGGATCGTGAGCACCTCCAGGATTTGGTCCCATCCCG
CGTTGCACAGCTAGGACGATCACTAGCCAAAAGATGCGTTTGGTTCAGAT
GGGGGAAATAGTGGTGGTGTGTACCAAGGACTTGGGTTGGAAGAATGGGC
CAGAAGCAACGTCAACGGTCGCTCAGGCTGCATCAGTCCAAGCCCGGCCT
CTTATCTTGCCTTCCCTACACACACAGACATCTAAGCTTTTTAAAATACC
AAATGGAGCCCCCATTTCAAGTCGAGGACTTTTCGGACTCCTCAGCGGAA
GGCAAGTAATCCCCACCGATCTAAACCCAGCATCATCCAGCCTCGTTCCC
TCCTCACCCCCCAAAATAAATATCCTTCCTCCCGTGCATGATTTACACAG
AGGACCATGAGGCCGTAGACGAGTTGTACGACGAAAACGCGGACGAAGAG
GATGAGAAATGGATTATCAAGCACTGGCGCCAAGGACAAGCCTTGCCAAT
TCAACAAAGAAGTGCAACGGCGGCACGCTCGACGGATGCCGTCCTGAATT
GCCCGTGCTGCTTCACTACTGTGTGCATGGAATGCCAAAGGTGAGCTGTG
GAACATTCTATATGCAATGAGCATAATATTATTGCCAAACTTCTCTACAA
AACCATGAGACTTGGCACAGCTTGATCCTGCTGCCATCCACTTGGATTCC
AAAATCTGACTTCCCTTACCCTCCCCGCCCCCTTCTTCATCCCAAGGCAT
GCCATTTACAAGACACAATACCGGGCTATGTTTATTATAAATTGCAGGGT
TAAGACAAATGAAAATTTAAGCGATACGCGGAAGGAAGAGGAATACGCAC
GTGAGGAAGTCGAGGCCGAAACCACACCATTTACACAATCAATACCACCA
GCAGCACATGGAGAAGAAGGCACCCGCGACTCCGACAAACAGCAACGTCA
ACATGATCAGCAGCAAAATAAGAAGGGAGTGCGCTGGAACGACATCCTTG
ACGGGGAAGCTCCAGTGCGTGCGGTGGAATGCGAGACGTGTGGTACGGTA
GTGGGTGTGCAGGATGAAGACGAGGTCACACATTTTTTTAATGTAATTGC
TTCATGAAGCGTGAGGGGGGAAAACAATGAAGATTAATAAAAGTAGAAAA
AGAAGAAAACAGGATGAAGGCATTTATAAGATATCTGTACATAAATTACC
ATTGAAATATTGAAAATACATTAGAGATAAAGACATATGGGTGTACAACA
CACAACGTCGTCCTCGACTGA
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Coding sequence (CDS) from alignment at scaffold_8:604643..605913+

>mRNA_4001 ID=mRNA_4001|Name=jgi.p|Nanoce1779_2|586098|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_8:604643..605913+ (Nannochloropsis oceanica)
ATGATTTACACAGAGGACCATGAGGCCGTAGACGAGTTGTACGACGAAAA
CGCGGACGAAGAGGATGAGAAATGGATTATCAAGCACTGGCGCCAAGGAC
AAGCCTTGCCAATTCAACAAAGAAGTGCAACGGCGGCACGCTCGACGGAT
GCCGTCCTGAATTGCCCGTGCTGCTTCACTACTGTGTGCATGGAATGCCA
AAGGCATGCCATTTACAAGACACAATACCGGGCTATGTTTATTATAAATT
GCAGGGTTAAGACAAATGAAAATTTAAGCGATACGCGGAAGGAAGAGGAA
TACGCACGTGAGGAAGTCGAGGCCGAAACCACACCATTTACACAATCAAT
ACCACCAGCAGCACATGGAGAAGAAGGCACCCGCGACTCCGACAAACAGC
AACGTCAACATGATCAGCAGCAAAATAAGAAGGGAGTGCGCTGGAACGAC
ATCCTTGACGGGGAAGCTCCAGTGCGTGCGGTGGAATGCGAGACGTGTGG
TACGGTAGTGGGTGTGCAGGATGAAGACGAGGTCACACATTTTTTTAATG
TAATTGCTTCATGAATGATTTACACAGAGGACCATGAGGCCGTAGACGAG
TTGTACGACGAAAACGCGGACGAAGAGGATGAGAAATGGATTATCAAGCA
CTGGCGCCAAGGACAAGCCTTGCCAATTCAACAAAGAAGTGCAACGGCGG
CACGCTCGACGGATGCCGTCCTGAATTGCCCGTGCTGCTTCACTACTGTG
TGCATGGAATGCCAAAGGCATGCCATTTACAAGACACAATACCGGGCTAT
GTTTATTATAAATTGCAGGGTTAAGACAAATGAAAATTTAAGCGATACGC
GGAAGGAAGAGGAATACGCACGTGAGGAAGTCGAGGCCGAAACCACACCA
TTTACACAATCAATACCACCAGCAGCACATGGAGAAGAAGGCACCCGCGA
CTCCGACAAACAGCAACGTCAACATGATCAGCAGCAAAATAAGAAGGGAG
TGCGCTGGAACGACATCCTTGACGGGGAAGCTCCAGTGCGTGCGGTGGAA
TGCGAGACGTGTGGTACGGTAGTGGGTGTGCAGGATGAAGACGAGGTCAC
ACATTTTTTTAATGTAATTGCTTCATGA
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Synonyms
Publications