jgi.p|Nanoce1779_2|577222, mRNA_400 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577222
Unique NamemRNA_400
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length903
Alignment locationscaffold_3:991067..992100 +

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Properties
Property NameValue
TranscriptId577308
TrackFilteredModels2
ProteinId577222
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:991067..992100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577222gene_400Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577222mRNA_400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_400CDS_400Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_400 ID=mRNA_400|Name=jgi.p|Nanoce1779_2|577222|organism=Nannochloropsis oceanica|type=mRNA|length=903bp
AAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAGCGCTGCCA
CGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCATCCTCGTGG
TCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTTGTCCTCCT
CAGCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTCCACTAAAG
GACTACAACGATGTTCACCATCATCCCGGGTATCGACTGCTTTCGGTTCC
TCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCTATCTTTCC
ACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTATTACCATGA
AAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCGCCACGAAC
AAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAAGCTGGCAT
CTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACAGTGTCAAT
TAAGAGACGCTTATTGTCGCGTGCGTGATGGGGAGCTATGGATTCATAAT
CTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAGCATGTTGA
GAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTTGGAGCTGA
TGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGAAGATTTAT
TTGACAGCAACGCACAGGATAAAGGTGGAAGTGGCCATAGGACGGGGCAT
CAAGAAATACGACAAGCGTGAGGCGGCAAAGGAACGGGAGATCAAGCGGG
GCTTCGAGAAGATTATGAAAAGTTTCTAACTTTGCTTGTTTTTGGAATGA
AAAGGACCGGAAAATAATCAAAAAAATGAATCAAATACGCACATTAATTA
AAT
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protein sequence of jgi.p|Nanoce1779_2|577222

>mRNA_400-protein ID=mRNA_400-protein|Name=jgi.p|Nanoce1779_2|577222|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MLGFVLLSSACCHAIQYNTLSTKGLQRCSPSSRVSTAFGSSTAFGTSPPT
LFGPIFPPLPCRPSSSSSCIITMKGLPDPQHTIKRICATNKYAKSSYEIG
KKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTG
KYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVE
VAIGRGIKKYDKREAAKEREIKRGFEKIMKSF*
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mRNA from alignment at scaffold_3:991067..992100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_400 ID=mRNA_400|Name=jgi.p|Nanoce1779_2|577222|organism=Nannochloropsis oceanica|type=mRNA|length=1034bp|location=Sequence derived from alignment at scaffold_3:991067..992100+ (Nannochloropsis oceanica)
AAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAGCGCTGCCA
CGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCATCCTCGTGG
TCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTTGTCCTCCT
CAGCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTCCACTAAAG
GACTACAACGATGTTCACCATCATCCCGGGTATCGACTGCTTTCGGTTCC
TCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCTATCTTTCC
ACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTATTACCATGA
AAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCGCCACGAAC
AAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAAGCTGGCAT
CTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACAGTGTCAAT
TAAGAGACGCTTATTGTCGCGTGCGTGATGGGGAGCTATGGATTCATAAT
CTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAGCATGTTGA
GAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTTGGAGCTGA
TGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGAAGATTTAT
TTGACAGCAACGCACAGGTACGTACCCAAAAAAAAGAAAAGAGGGTAAGA
TGGCGGGCAGTTTCGATTGCTAAGATGTGCGCTTTTTGTTTGTCTCATCT
CTCTTGTCTCTTTCTTCGCCTTCCTCCTTCCTTGTTATGTTATTCCAGGA
TAAAGGTGGAAGTGGCCATAGGACGGGGCATCAAGAAATACGACAAGCGT
GAGGCGGCAAAGGAACGGGAGATCAAGCGGGGCTTCGAGAAGATTATGAA
AAGTTTCTAACTTTGCTTGTTTTTGGAATGAAAAGGACCGGAAAATAATC
AAAAAAATGAATCAAATACGCACATTAATTAAAT
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Coding sequence (CDS) from alignment at scaffold_3:991067..992100+

>mRNA_400 ID=mRNA_400|Name=jgi.p|Nanoce1779_2|577222|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_3:991067..992100+ (Nannochloropsis oceanica)
ATGCTCGGATTTGTCCTCCTCAGCAGTGCCTGCTGTCACGCTATCCAGTA
CAACACTCTTTCCACTAAAGGACTACAACGATGTTCACCATCATCCCGGG
TATCGACTGCTTTCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACC
CTTTTCGGTCCTATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTC
CTCCTGCATTATTACCATGAAAGGCCTCCCCGATCCACAACATACCATCA
AACGTATCTGCGCCACGAACAAATACGCCAAATCCTCCTACGAAATAGGC
AAGAAGTTCGAAGCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGT
TGCCTCTGGACAGTGTCAATTAAGAGACGCTTATTGTCGCGTGCGTGATG
GGGAGCTATGGATTCATAATCTGTTCATTGGACCACACAAGACGACGGGA
AAATATTTCCAGCATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAA
AAAAGAGGTCTTGGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCA
TTGTACCATTGAAGATTTATTTGACAGCAACGCACAGGATAAAGGTGGAA
GTGGCCATAGGACGGGGCATCAAGAAATACGACAAGCGTGAGGCGGCAAA
GGAACGGGAGATCAAGCGGGGCTTCGAGAAGATTATGAAAAGTTTCTAAA
TGCTCGGATTTGTCCTCCTCAGCAGTGCCTGCTGTCACGCTATCCAGTAC
AACACTCTTTCCACTAAAGGACTACAACGATGTTCACCATCATCCCGGGT
ATCGACTGCTTTCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCC
TTTTCGGTCCTATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCC
TCCTGCATTATTACCATGAAAGGCCTCCCCGATCCACAACATACCATCAA
ACGTATCTGCGCCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCA
AGAAGTTCGAAGCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTT
GCCTCTGGACAGTGTCAATTAAGAGACGCTTATTGTCGCGTGCGTGATGG
GGAGCTATGGATTCATAATCTGTTCATTGGACCACACAAGACGACGGGAA
AATATTTCCAGCATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAA
AAAGAGGTCTTGGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCAT
TGTACCATTGAAGATTTATTTGACAGCAACGCACAGGATAAAGGTGGAAG
TGGCCATAGGACGGGGCATCAAGAAATACGACAAGCGTGAGGCGGCAAAG
GAACGGGAGATCAAGCGGGGCTTCGAGAAGATTATGAAAAGTTTCTAA
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Synonyms
Publications