jgi.p|Nanoce1779_2|668130, mRNA_4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668130
Unique Name	mRNA_4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1386
Alignment location	scaffold_3:11782..13686 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668216
Track	FilteredModels2
ProteinId	668130

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:11782..13686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668130	gene_4	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668130	mRNA_4-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4	CDS_4	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:11782..13686+
coding sequence from alignment at scaffold_3:11782..13686+

mRNA sequence

>mRNA_4 ID=mRNA_4|Name=jgi.p|Nanoce1779_2|668130|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
CGTAGCCACCAGCAGAGGAAGGGGCGGCACGGGCAGCCTGTCAGTAGGTT
GTAAACAAGGCCATGTCGAGTCCGTGGATGGAGTCAGTGGATGGACGCGT
CTTGTAGACGCCTGGCAGAGAGGCAGAGGACAGGCACTGACTCCGTGGTA
CTCGCGGAGTGAAGTTAATTGGCGAGAGAGGGACAGCGCAGCGGGGTAGC
GTGCCGCCCTGCCAATTTCTTTCCCCCAGCCCTGCATTTATCACTCCTCA
ACTCACGCTGTACACATACTGGCACAAAAAACACAAGATCCTGAGGGCAG
CAAGAACAGCCCGGCATGAGCGCCTACCGTCCTTTGCGAGAGCCTCAGTT
CTCCACCAGTAGCAGTATTAATAGTCTAGGCGAACAAAACCGGGTGCCTT
GTCCCTCTCGACACCACACCGAGGAACGGCCTTCCTCTCCTCCCCACTCT
CCCCATCCAACGGGCGGGCTTCAGATGGCCACCCGCAATGGTGGAGGAGG
ACTGGGCATGCCAAAAAAGACGCAAATGGAAGAGGAAGTAGACCGACGTA
CTCCTCTCCTAGATGAATCGCTCAATACCCATCACCACAATGACGGCATG
GAGGAGACAGACGAGGAGAGAGGCGGGGTAGGCAGCATCCACGCATCAAC
TGCCGCCACCGATGCAGCTGCTAATGGTGCTCAAGCTCCTATAAGGGGCA
GATCCGCGTCGTCTCCACCACATCTCATCCCTTCCACCACGTCCTCCTTC
CGGGCCCGTCTCTTGCCTTCGCATTTACATGGTTCTTCCACCTCAGGAAG
AGAAGTAGGAGTAGAAAATAGTGCCAGAGGCAGCAACAGAAGGAGGAGCG
GTAGAAGCCGACTCGTAGAAAGACACGCCACGCGGACGGGACAAGTCAAG
GGGAGTCGATGGAACATGACTCGAGTGGGGTGGGGCGACGGGATCCAGGA
CTCCCTCGAGAGTCTGCTTTACGACTCGTTCAACACGCTGCTGATGGCGC
CCACCGGGTATACGCTGGCATTCCTCGCCTGTGCGTACCTGAGCCTGGTG
ATGCTTTTTGCAGGGGTCTATGTGGTGCTGAGCAGGCAGGAGGAGTGCAA
CATGGACATTGATAGCTTTCTGAAGGGGTATCTCTTCAGTCTCGAGACAA
TGGCCACTGTCGGTTTTGGCGCGAAAGACATGTATTTTGGGGAATGCACG
GCCCCGACCATGATAGTGACGCTGCAGATCTTCGTCTCCATATTCGTCGA
CGCAGTCTTCATCGGACTCATTTTCCTTCGCTTCTCCCGGCCGCAATAAA
CGGGCCCAAGCGCTCTTATTTTCCGAGGTGGCTGTCATCCGCCCCGCGTC
CCCAGAGGAATCTCATGCCCTGGTTCTCGCAGCTCC

protein sequence of jgi.p|Nanoce1779_2|668130

>mRNA_4-protein ID=mRNA_4-protein|Name=jgi.p|Nanoce1779_2|668130|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSAYRPLREPQFSTSSSINSLGEQNRVPCPSRHHTEERPSSPPHSPHPTG
GLQMATRNGGGGLGMPKKTQMEEEVDRRTPLLDESLNTHHHNDGMEETDE
ERGGVGSIHASTAATDAAANGAQAPIRGRSASSPPHLIPSTTSSFRARLL
PSHLHGSSTSGREVGVENSARGSNRRRSGRSRLVERHATRTGQVKGSRWN
MTRVGWGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAG
VYVVLSRQEECNMDIDSFLKGYLFSLETMATVGFGAKDMYFGECTAPTMI
VTLQIFVSIFVDAVFIGLIFLRFSRPQ*

mRNA from alignment at scaffold_3:11782..13686+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4 ID=mRNA_4|Name=jgi.p|Nanoce1779_2|668130|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at scaffold_3:11782..13686+ (Nannochloropsis oceanica)
CGTAGCCACCAGCAGAGGAAGGGGCGGCACGGGCAGCCTGTCAGTAGGTT
GTAAACAAGGCCATGTCGAGTCCGTGGATGGAGTCAGTGGATGGACGCGT
CTTGTAGACGCCTGGCAGAGAGGCAGAGGACAGGCACTGACTCCGTGGTA
CTCGCGGAGTGAAGTTAATTGGCGAGAGAGGGACAGCGCAGCGGGGTAGC
GTGCCGCCCTGCCAATTTCTTTCCCCCAGCCCTGCATTTATCACTCCTCA
ACTCACGCTGTACACATACTGGCACAAAAAACACAAGATCCTGAGGGCAG
CAAGAACAGCCCGGCATGAGCGCCTACCGTCCTTTGCGAGAGGTGAGTGT
GTTCATCCAATCAGCAATTACAGACCCCATCCCTGTCAATGTCAATCCTT
GCTTCTTTTATGCTCGTAGCACTCACCAAGCCTCCTCCTCCCACTCAAAA
CGACAGCCTCAGTTCTCCACCAGTAGCAGTATTAATAGTCTAGGCGAACA
AAACCGGGTGCCTTGTCCCTCTCGACACCACACCGAGGAACGGCCTTCCT
CTCCTCCCCACTCTCCCCATCCAACGGGCGGGCTTCAGATGGCCACCCGC
AATGGTGGAGGAGGACTGGGCATGCCAAAAAAGACGCAAATGGAAGAGGA
AGTAGACCGACGTACTCCTCTCCTAGATGAATCGCTCAATACCCATCACC
ACAATGACGGCATGGAGGAGACAGACGAGGAGAGAGGCGGGGTAGGCAGC
ATCCACGCATCAACTGCCGCCACCGATGCAGCTGCTAATGGTGCTCAAGC
TCCTATAAGGGGCAGATCCGCGTCGTCTCCACCACATCTCATCCCTTCCA
CCACGTCCTCCTTCCGGGCCCGTCTCTTGCCTTCGCATTTACATGGTTCT
TCCACCTCAGGAAGAGAAGTAGGAGTAGAAAATAGTGCCAGAGGCAGCAA
CAGAAGGAGGAGCGGTAGAAGCCGACTCGTAGAAAGACACGCCACGCGGA
CGGGACAAGTCAAGGGGAGTCGATGGAACATGACTCGAGTGGGGTGGGGC
GACGGGATCCAGGACTCCCTCGAGAGTCTGCTTTACGACTCGTTCAACAC
GCTGCTGATGGCGCCCACCGGGTATACGCTGGCATTCCTCGCCTGTGCGT
ACCTGAGCCTGGTGATGCTTTTTGCAGGGGTCTATGTGGTGCTGAGCAGG
CAGGAGGAGTGCAACATGGACATTGATAGCTTTCTGAAGGGGTATCTCTT
CAGTCTCGAGACAATGGTAAGGCGAGGATGGGAAGGGAAGGAGGGAGGGG
AAGGAAGGAGGAAGGGAGGGAGGGAGGGAAGGAAGGAGGAAGGGAGGGGA
GGGAGGGAGGGAGCAAGTGAGCAAGGGAGCAAGGGAGGCAAGAAGGAAAG
GAGGGAAAGTGGAACCCTACACTGGCGAATAGGTCATCCGCACGCTGAGA
ACTAACCACCCTTCCCTCCTTTCCTCCCTCCCTCCAGGCCACTGTCGGTT
TTGGCGCGAAAGACATGTATTTTGGGGAATGCACGGCCCCGACCATGATA
GTGACGCTGCAGATCTTCGTCTCCATATTCGTCGACGCAGTCTTCATCGG
ACTCATTTTCCTTCGCTTCTCCCGGCCGCAATAAACGGGCCCAAGCGCTC
TTATTTTCCGAGGTGGGTAAGGAGGGAGGGAGGGAGGGAAGGAGGGAAGG
AGGGAGGGGGGACGGGCGGGTGGGTGGGATAGCGCTGACGGAAATACCTC
TCCACGTCCATCGAGTCAAGTCAACGGCAAACTGAGAGCCTCCGCCGTCC
GTACCTCACCCTCCTCACCACCCATCCCCCCTCTCCAACCGCAAAGGTGG
CTGTCATCCGCCCCGCGTCCCCAGAGGAATCTCATGCCCTGGTTCTCGCA
GCTCC

Coding sequence (CDS) from alignment at scaffold_3:11782..13686+

>mRNA_4 ID=mRNA_4|Name=jgi.p|Nanoce1779_2|668130|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_3:11782..13686+ (Nannochloropsis oceanica)
ATGAGCGCCTACCGTCCTTTGCGAGAGCCTCAGTTCTCCACCAGTAGCAG
TATTAATAGTCTAGGCGAACAAAACCGGGTGCCTTGTCCCTCTCGACACC
ACACCGAGGAACGGCCTTCCTCTCCTCCCCACTCTCCCCATCCAACGGGC
GGGCTTCAGATGGCCACCCGCAATGGTGGAGGAGGACTGGGCATGCCAAA
AAAGACGCAAATGGAAGAGGAAGTAGACCGACGTACTCCTCTCCTAGATG
AATCGCTCAATACCCATCACCACAATGACGGCATGGAGGAGACAGACGAG
GAGAGAGGCGGGGTAGGCAGCATCCACGCATCAACTGCCGCCACCGATGC
AGCTGCTAATGGTGCTCAAGCTCCTATAAGGGGCAGATCCGCGTCGTCTC
CACCACATCTCATCCCTTCCACCACGTCCTCCTTCCGGGCCCGTCTCTTG
CCTTCGCATTTACATGGTTCTTCCACCTCAGGAAGAGAAGTAGGAGTAGA
AAATAGTGCCAGAGGCAGCAACAGAAGGAGGAGCGGTAGAAGCCGACTCG
TAGAAAGACACGCCACGCGGACGGGACAAGTCAAGGGGAGTCGATGGAAC
ATGACTCGAGTGGGGTGGGGCGACGGGATCCAGGACTCCCTCGAGAGTCT
GCTTTACGACTCGTTCAACACGCTGCTGATGGCGCCCACCGGGTATACGC
TGGCATTCCTCGCCTGTGCGTACCTGAGCCTGGTGATGCTTTTTGCAGGG
GTCTATGTGGTGCTGAGCAGGCAGGAGGAGTGCAACATGGACATTGATAG
CTTTCTGAAGGGGTATCTCTTCAGTCTCGAGACAATGGCCACTGTCGGTT
TTGGCGCGAAAGACATGTATTTTGGGGAATGCACGGCCCCGACCATGATA
GTGACGCTGCAGATCTTCGTCTCCATATTCGTCGACGCAGTCTTCATCGG
ACTCATTTTCCTTCGCTTCTCCCGGCCGCAATAAATGAGCGCCTACCGTC
CTTTGCGAGAGCCTCAGTTCTCCACCAGTAGCAGTATTAATAGTCTAGGC
GAACAAAACCGGGTGCCTTGTCCCTCTCGACACCACACCGAGGAACGGCC
TTCCTCTCCTCCCCACTCTCCCCATCCAACGGGCGGGCTTCAGATGGCCA
CCCGCAATGGTGGAGGAGGACTGGGCATGCCAAAAAAGACGCAAATGGAA
GAGGAAGTAGACCGACGTACTCCTCTCCTAGATGAATCGCTCAATACCCA
TCACCACAATGACGGCATGGAGGAGACAGACGAGGAGAGAGGCGGGGTAG
GCAGCATCCACGCATCAACTGCCGCCACCGATGCAGCTGCTAATGGTGCT
CAAGCTCCTATAAGGGGCAGATCCGCGTCGTCTCCACCACATCTCATCCC
TTCCACCACGTCCTCCTTCCGGGCCCGTCTCTTGCCTTCGCATTTACATG
GTTCTTCCACCTCAGGAAGAGAAGTAGGAGTAGAAAATAGTGCCAGAGGC
AGCAACAGAAGGAGGAGCGGTAGAAGCCGACTCGTAGAAAGACACGCCAC
GCGGACGGGACAAGTCAAGGGGAGTCGATGGAACATGACTCGAGTGGGGT
GGGGCGACGGGATCCAGGACTCCCTCGAGAGTCTGCTTTACGACTCGTTC
AACACGCTGCTGATGGCGCCCACCGGGTATACGCTGGCATTCCTCGCCTG
TGCGTACCTGAGCCTGGTGATGCTTTTTGCAGGGGTCTATGTGGTGCTGA
GCAGGCAGGAGGAGTGCAACATGGACATTGATAGCTTTCTGAAGGGGTAT
CTCTTCAGTCTCGAGACAATGGCCACTGTCGGTTTTGGCGCGAAAGACAT
GTATTTTGGGGAATGCACGGCCCCGACCATGATAGTGACGCTGCAGATCT
TCGTCTCCATATTCGTCGACGCAGTCTTCATCGGACTCATTTTCCTTCGC
TTCTCCCGGCCGCAATAAATGAGCGCCTACCGTCCTTTGCGAGAGCCTCA
GTTCTCCACCAGTAGCAGTATTAATAGTCTAGGCGAACAAAACCGGGTGC
CTTGTCCCTCTCGACACCACACCGAGGAACGGCCTTCCTCTCCTCCCCAC
TCTCCCCATCCAACGGGCGGGCTTCAGATGGCCACCCGCAATGGTGGAGG
AGGACTGGGCATGCCAAAAAAGACGCAAATGGAAGAGGAAGTAGACCGAC
GTACTCCTCTCCTAGATGAATCGCTCAATACCCATCACCACAATGACGGC
ATGGAGGAGACAGACGAGGAGAGAGGCGGGGTAGGCAGCATCCACGCATC
AACTGCCGCCACCGATGCAGCTGCTAATGGTGCTCAAGCTCCTATAAGGG
GCAGATCCGCGTCGTCTCCACCACATCTCATCCCTTCCACCACGTCCTCC
TTCCGGGCCCGTCTCTTGCCTTCGCATTTACATGGTTCTTCCACCTCAGG
AAGAGAAGTAGGAGTAGAAAATAGTGCCAGAGGCAGCAACAGAAGGAGGA
GCGGTAGAAGCCGACTCGTAGAAAGACACGCCACGCGGACGGGACAAGTC
AAGGGGAGTCGATGGAACATGACTCGAGTGGGGTGGGGCGACGGGATCCA
GGACTCCCTCGAGAGTCTGCTTTACGACTCGTTCAACACGCTGCTGATGG
CGCCCACCGGGTATACGCTGGCATTCCTCGCCTGTGCGTACCTGAGCCTG
GTGATGCTTTTTGCAGGGGTCTATGTGGTGCTGAGCAGGCAGGAGGAGTG
CAACATGGACATTGATAGCTTTCTGAAGGGGTATCTCTTCAGTCTCGAGA
CAATGGCCACTGTCGGTTTTGGCGCGAAAGACATGTATTTTGGGGAATGC
ACGGCCCCGACCATGATAGTGACGCTGCAGATCTTCGTCTCCATATTCGT
CGACGCAGTCTTCATCGGACTCATTTTCCTTCGCTTCTCCCGGCCGCAAT
AA

Synonyms

Publications