jgi.p|Nanoce1779_2|586073, mRNA_3996 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586073
Unique Name	mRNA_3996
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1958
Alignment location	scaffold_8:587244..589451 -

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Properties


Property Name	Value
TranscriptId	586159
Track	FilteredModels2
ProteinId	586073

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:587244..589451 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586073	gene_3996	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586073	mRNA_3996-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3996	CDS_3996	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:587244..589451-
coding sequence from alignment at scaffold_8:587244..589451-

mRNA sequence

>mRNA_3996 ID=mRNA_3996|Name=jgi.p|Nanoce1779_2|586073|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp
ACAGGCCGTGGCGCCCCTGCTTTCGTTTCTGCGACGCCAGTTCAGCGGTA
GTTTGCTGCTTTCCAAGCACTTTGAAGCAGCAGCCTCGTCCACTCCAGCC
TCCAATCCACTCGCAACGGTCTCCCCCCTCCGTCGACCCTCCTTCCACAC
CCACGCAATGGTGGCTCGCACGCTATACTGCTCCACTCGGGGTGGCGTCA
AGGATGCCACCTTCGAGGAGGTGGTGTTGGGCGGACTGGCCCCCGACCGT
GGGTTGTATGTGCCCCAAGTCATGCCAAAATTTACGTCTGAGGAGCTGGA
GGGGATGCGCAGCATGACGTTCCCCGAGCTGGCCTTCGCCATTGTTTCGC
GTTTTGTGGGAGAGAAGGACATCCCAGCCAAGGATTTGAAGGACATTATT
GATCGTAGCTACTCCACTTTTCGCACGGCTGACGTCTCGCCGGTGAAGCA
AGTGGGCTCGGCTTGGATTTTGGAGCTTTTCCACGGGCCGACATTTGCGT
TCAAAGACGTGGCCTTACAATTGTTGGGAAATTTGTTTGAGTATTTCTTG
TCAAAGCGTTCGGGTCTGGACGGGTTTTTGACGATTCTGGGTGCGACTTC
GGGAGATACGGGCTCGGCTGCTATTTATGGCTTGAGGGGGAAGGCCAATG
TTCGTTGTTTTATTCTTTATCCAAAGGGGAGGACTAGCGCGATTCAGGAA
CGACAAATGACGACGGTGCCTGATAAAAATGTGCAGTGTGTTGCGATTGA
AGGGACATTTGATGACTGTCAGAATATCGTGAAAGCGGCTTTTCAGGATA
AGGAGTTCCGGGAGGAAGTGAGGTTGGGAGCCGTGAATTCGATAAATTGG
GCACGTGTCTTGGCACAGATTACCTACTATTACTGGGCATATTTTCGTAT
CACAGACTTTGACCCGTCCATAGATAAGTTGAGCTTCTCCGTCCCCACGG
GTAATTTTGGCGACGTTTTGGCCGGCTACTATGCCAAGCGCATGGGGCTG
CCGGTAGAGCAGTTGCTGGTCGCTACCAACGTGAATGACATCTTGCACCG
TTTTTTCGAGACCGGGAATTATCACAAGGCAGATGTGACTCAGACGCACT
CACCCTCGATGGATATTTCGATCTCCTCAAATTTTGAGCGATATCTCTTT
GAGTTGGCAGGGAGGGATCATGGCAAGCTGAAGGGTTGGATGACGACGTT
TGAGACAACAGGGGAGCTGAGCTTGGAGGGAGACTTGCTGGAGAAGGCGC
GAGAGGACTTCATTTCGGGCCGGGGAGATGAAGAGCAGACCCTTGCCACC
ATGCGAAAGTGGCACGAGGCCCACGGCTACCTCCTCTGTCCACATTCAGC
CGTCGGAGTACACGCAGCCGACTCGTTGAGTATGCTCCAAAAAGGCCGCA
CCGTCTGCCTCGCTACTGCCCACCCGGCGAAATTTCCCGAGGCAACCGAC
CAGCTGGGGATCGAGGGAGAGCTCCCGAAAGAATTGGCAGCCCTGGCGGA
TCTACCGATGCGATCCATTTTGTTGAAAAATGATCTGGAAATTGTGAAGT
CATATATGAAGACACGGATCCCGACGATGGATGGGAAGGAATAGAGAGAG
AGGGCGGGAGGGAAGAAAGGAGCGAAGGAGTAAGAATTTAATGAGCTTTG
GTGGAGGAAGGAGAGTCTGATTCGTTGTGATACTGAAGGGAGGACACAAC
CCGTCAGGGGTAAGGGGAAAATTCGAGCGGCATAGTGCGTATCTGCATGT
GCGTGGCTGAAAGAGATTTTCAAAATGAGATGCATGCCAGTGTAGCCATG
CCCTGAGGGCTAGAACTCATTTTATTTTTTATTTATTTATTTATGTTGAG
AAAAGTAGACCATATGCACGACGACGACTACGACGATGGTTGTGACAGCA
AGCAGGAAAAAAGACAATCAAAGAAAAAAAGAAAAGGAAACTAAGATATG
ACTAACTA

protein sequence of jgi.p|Nanoce1779_2|586073

>mRNA_3996-protein ID=mRNA_3996-protein|Name=jgi.p|Nanoce1779_2|586073|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MVARTLYCSTRGGVKDATFEEVVLGGLAPDRGLYVPQVMPKFTSEELEGM
RSMTFPELAFAIVSRFVGEKDIPAKDLKDIIDRSYSTFRTADVSPVKQVG
SAWILELFHGPTFAFKDVALQLLGNLFEYFLSKRSGLDGFLTILGATSGD
TGSAAIYGLRGKANVRCFILYPKGRTSAIQERQMTTVPDKNVQCVAIEGT
FDDCQNIVKAAFQDKEFREEVRLGAVNSINWARVLAQITYYYWAYFRITD
FDPSIDKLSFSVPTGNFGDVLAGYYAKRMGLPVEQLLVATNVNDILHRFF
ETGNYHKADVTQTHSPSMDISISSNFERYLFELAGRDHGKLKGWMTTFET
TGELSLEGDLLEKAREDFISGRGDEEQTLATMRKWHEAHGYLLCPHSAVG
VHAADSLSMLQKGRTVCLATAHPAKFPEATDQLGIEGELPKELAALADLP
MRSILLKNDLEIVKSYMKTRIPTMDGKE*

mRNA from alignment at scaffold_8:587244..589451-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3996 ID=mRNA_3996|Name=jgi.p|Nanoce1779_2|586073|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at scaffold_8:587244..589451- (Nannochloropsis oceanica)
ACAGGCCGTGGCGCCCCTGCTTTCGTTTCTGCGACGCCAGTTCAGCGGTA
GTTTGCTGCTTTCCAAGCACTTTGAAGCAGCAGCCTCGTCCACTCCAGCC
TCCAATCCACTCGCAACGGTCTCCCCCCTCCGTCGACCCTCCTTCCACAC
CCACGCAATGGTGGCTCGCACGCTATACTGCTCCACTCGGGGTGGCGTCA
AGGATGCCACCTTCGAGGAGGTGGTGTTGGGCGGACTGGCCCCCGACCGT
GGGTTGTATGTGCCCCAAGTCATGCCAAAATTTACGTCTGAGGAGCTGGA
GGGGATGCGCAGCATGACGTTCCCCGAGCTGGCCTTCGCCATTGTTTCGC
GTTTTGTGGGAGAGAAGGACATCCCAGCCAAGGATTTGAAGGACATTATT
GATCGTAGCTACTCCACTTTTCGCACGGCTGACGTCTCGCCGGTGAAGCA
AGTGGGCTCGGCTTGGATTTTGGAGCTTTTCCACGGGCCGACATTTGCGT
TCAAAGACGTGGCCTTACAATTGTTGGGAAATTTGTTTGAGTATTTCTTG
TCAAAGCGTTCGGGTCTGGACGGGTTTTTGACGATTCTGGGTGCGACTTC
GGGAGATACGGGCTCGGCTGCTATTTATGGCTTGAGGGGGAAGGCCAATG
TTCGTTGTTTTATTCTTTATCCAAAGGGGAGGACTAGCGCGATTCAGGAA
CGACAAATGACGACGGTGCCTGATAAAAATGTGCAGTGTGTTGCGATTGA
AGGGACATTTGATGACTGTCAGAATATCGTGAAAGCGGCTTTTCAGGATA
AGGAGTTCCGGGAGGAAGTGAGGTTGGGAGCCGTGAATTCGATAAATTGG
GCACGTGTCTTGGCACAGATTACCTACTATTACTGGGCATATTTTCGTAT
CACAGACTTTGACCCGTCCATAGATAAGGTAGGTGTGGTATAGGGAGGAA
GGAGGGAGGTTTGATTTCTTCATAGAGGCATCTCTCCCCCGTCGAATACT
AATCCTCCCTCCCCCCTTCCCCCCGTTTCACACCTATAGTTGAGCTTCTC
CGTCCCCACGGGTAATTTTGGCGACGTTTTGGCCGGCTACTATGCCAAGC
GCATGGGGCTGCCGGTAGAGCAGTTGCTGGTCGCTACCAACGTGAATGAC
ATCTTGCACCGTTTTTTCGAGACCGGGAATTATCACAAGGCAGATGTGAC
TCAGACGCACTCACCCTCGATGGATATTTCGATCTCCTCAAATTTTGAGC
GATATCTCTTTGAGTTGGCAGGGAGGGATCATGGCAAGCTGAAGGGTTGG
ATGACGACGTTTGAGACAACAGGGGAGCTGAGCTTGGAGGGAGACTTGCT
GGAGAAGGCGCGAGAGGACTTCATTTCGGGCCGGGGAGATGAAGAGCAGG
TGTGTTTTGATTGATCTTCTCCTTGAGGAAAATTAGGGATTGGTGAGAGA
GGAAAAATGGATTTGTATGATTTAAAAGCAGCGAAGGACATCACACACAA
CCTGATTCCTCCTCCCAACTTCCTCCCCACCAATACAGACCCTTGCCACC
ATGCGAAAGTGGCACGAGGCCCACGGCTACCTCCTCTGTCCACATTCAGC
CGTCGGAGTACACGCAGCCGACTCGTTGAGTATGCTCCAAAAAGGCCGCA
CCGTCTGCCTCGCTACTGCCCACCCGGCGAAATTTCCCGAGGCAACCGAC
CAGCTGGGGATCGAGGGAGAGCTCCCGAAAGAATTGGCAGCCCTGGCGGA
TCTACCGATGCGATCCATTTTGTTGAAAAATGATCTGGAAATTGTGAAGT
CATATATGAAGACACGGATCCCGACGATGGATGGGAAGGAATAGAGAGAG
AGGGCGGGAGGGAAGAAAGGAGCGAAGGAGTAAGAATTTAATGAGCTTTG
GTGGAGGAAGGAGAGTCTGATTCGTTGTGATACTGAAGGGAGGACACAAC
CCGTCAGGGGTAAGGGGAAAATTCGAGCGGCATAGTGCGTATCTGCATGT
GCGTGGCTGAAAGAGATTTTCAAAATGAGATGCATGCCAGTGTAGCCATG
CCCTGAGGGCTAGAACTCATTTTATTTTTTATTTATTTATTTATGTTGAG
AAAAGTAGACCATATGCACGACGACGACTACGACGATGGTTGTGACAGCA
AGCAGGAAAAAAGACAATCAAAGAAAAAAAGAAAAGGAAACTAAGATATG
ACTAACTA

Coding sequence (CDS) from alignment at scaffold_8:587244..589451-

>mRNA_3996 ID=mRNA_3996|Name=jgi.p|Nanoce1779_2|586073|organism=Nannochloropsis oceanica|type=CDS|length=4311bp|location=Sequence derived from alignment at scaffold_8:587244..589451- (Nannochloropsis oceanica)
ACCCTTGCCACCATGCGAAAGTGGCACGAGGCCCACGGCTACCTCCTCTG
TCCACATTCAGCCGTCGGAGTACACGCAGCCGACTCGTTGAGTATGCTCC
AAAAAGGCCGCACCGTCTGCCTCGCTACTGCCCACCCGGCGAAATTTCCC
GAGGCAACCGACCAGCTGGGGATCGAGGGAGAGCTCCCGAAAGAATTGGC
AGCCCTGGCGGATCTACCGATGCGATCCATTTTGTTGAAAAATGATCTGG
AAATTGTGAAGTCATATATGAAGACACGGATCCCGACGATGGATGGGAAG
GAATAGTTGAGCTTCTCCGTCCCCACGGGTAATTTTGGCGACGTTTTGGC
CGGCTACTATGCCAAGCGCATGGGGCTGCCGGTAGAGCAGTTGCTGGTCG
CTACCAACGTGAATGACATCTTGCACCGTTTTTTCGAGACCGGGAATTAT
CACAAGGCAGATGTGACTCAGACGCACTCACCCTCGATGGATATTTCGAT
CTCCTCAAATTTTGAGCGATATCTCTTTGAGTTGGCAGGGAGGGATCATG
GCAAGCTGAAGGGTTGGATGACGACGTTTGAGACAACAGGGGAGCTGAGC
TTGGAGGGAGACTTGCTGGAGAAGGCGCGAGAGGACTTCATTTCGGGCCG
GGGAGATGAAGAGCAGATGGTGGCTCGCACGCTATACTGCTCCACTCGGG
GTGGCGTCAAGGATGCCACCTTCGAGGAGGTGGTGTTGGGCGGACTGGCC
CCCGACCGTGGGTTGTATGTGCCCCAAGTCATGCCAAAATTTACGTCTGA
GGAGCTGGAGGGGATGCGCAGCATGACGTTCCCCGAGCTGGCCTTCGCCA
TTGTTTCGCGTTTTGTGGGAGAGAAGGACATCCCAGCCAAGGATTTGAAG
GACATTATTGATCGTAGCTACTCCACTTTTCGCACGGCTGACGTCTCGCC
GGTGAAGCAAGTGGGCTCGGCTTGGATTTTGGAGCTTTTCCACGGGCCGA
CATTTGCGTTCAAAGACGTGGCCTTACAATTGTTGGGAAATTTGTTTGAG
TATTTCTTGTCAAAGCGTTCGGGTCTGGACGGGTTTTTGACGATTCTGGG
TGCGACTTCGGGAGATACGGGCTCGGCTGCTATTTATGGCTTGAGGGGGA
AGGCCAATGTTCGTTGTTTTATTCTTTATCCAAAGGGGAGGACTAGCGCG
ATTCAGGAACGACAAATGACGACGGTGCCTGATAAAAATGTGCAGTGTGT
TGCGATTGAAGGGACATTTGATGACTGTCAGAATATCGTGAAAGCGGCTT
TTCAGGATAAGGAGTTCCGGGAGGAAGTGAGGTTGGGAGCCGTGAATTCG
ATAAATTGGGCACGTGTCTTGGCACAGATTACCTACTATTACTGGGCATA
TTTTCGTATCACAGACTTTGACCCGTCCATAGATAAGACCCTTGCCACCA
TGCGAAAGTGGCACGAGGCCCACGGCTACCTCCTCTGTCCACATTCAGCC
GTCGGAGTACACGCAGCCGACTCGTTGAGTATGCTCCAAAAAGGCCGCAC
CGTCTGCCTCGCTACTGCCCACCCGGCGAAATTTCCCGAGGCAACCGACC
AGCTGGGGATCGAGGGAGAGCTCCCGAAAGAATTGGCAGCCCTGGCGGAT
CTACCGATGCGATCCATTTTGTTGAAAAATGATCTGGAAATTGTGAAGTC
ATATATGAAGACACGGATCCCGACGATGGATGGGAAGGAATAGTTGAGCT
TCTCCGTCCCCACGGGTAATTTTGGCGACGTTTTGGCCGGCTACTATGCC
AAGCGCATGGGGCTGCCGGTAGAGCAGTTGCTGGTCGCTACCAACGTGAA
TGACATCTTGCACCGTTTTTTCGAGACCGGGAATTATCACAAGGCAGATG
TGACTCAGACGCACTCACCCTCGATGGATATTTCGATCTCCTCAAATTTT
GAGCGATATCTCTTTGAGTTGGCAGGGAGGGATCATGGCAAGCTGAAGGG
TTGGATGACGACGTTTGAGACAACAGGGGAGCTGAGCTTGGAGGGAGACT
TGCTGGAGAAGGCGCGAGAGGACTTCATTTCGGGCCGGGGAGATGAAGAG
CAGATGGTGGCTCGCACGCTATACTGCTCCACTCGGGGTGGCGTCAAGGA
TGCCACCTTCGAGGAGGTGGTGTTGGGCGGACTGGCCCCCGACCGTGGGT
TGTATGTGCCCCAAGTCATGCCAAAATTTACGTCTGAGGAGCTGGAGGGG
ATGCGCAGCATGACGTTCCCCGAGCTGGCCTTCGCCATTGTTTCGCGTTT
TGTGGGAGAGAAGGACATCCCAGCCAAGGATTTGAAGGACATTATTGATC
GTAGCTACTCCACTTTTCGCACGGCTGACGTCTCGCCGGTGAAGCAAGTG
GGCTCGGCTTGGATTTTGGAGCTTTTCCACGGGCCGACATTTGCGTTCAA
AGACGTGGCCTTACAATTGTTGGGAAATTTGTTTGAGTATTTCTTGTCAA
AGCGTTCGGGTCTGGACGGGTTTTTGACGATTCTGGGTGCGACTTCGGGA
GATACGGGCTCGGCTGCTATTTATGGCTTGAGGGGGAAGGCCAATGTTCG
TTGTTTTATTCTTTATCCAAAGGGGAGGACTAGCGCGATTCAGGAACGAC
AAATGACGACGGTGCCTGATAAAAATGTGCAGTGTGTTGCGATTGAAGGG
ACATTTGATGACTGTCAGAATATCGTGAAAGCGGCTTTTCAGGATAAGGA
GTTCCGGGAGGAAGTGAGGTTGGGAGCCGTGAATTCGATAAATTGGGCAC
GTGTCTTGGCACAGATTACCTACTATTACTGGGCATATTTTCGTATCACA
GACTTTGACCCGTCCATAGATAAGACCCTTGCCACCATGCGAAAGTGGCA
CGAGGCCCACGGCTACCTCCTCTGTCCACATTCAGCCGTCGGAGTACACG
CAGCCGACTCGTTGAGTATGCTCCAAAAAGGCCGCACCGTCTGCCTCGCT
ACTGCCCACCCGGCGAAATTTCCCGAGGCAACCGACCAGCTGGGGATCGA
GGGAGAGCTCCCGAAAGAATTGGCAGCCCTGGCGGATCTACCGATGCGAT
CCATTTTGTTGAAAAATGATCTGGAAATTGTGAAGTCATATATGAAGACA
CGGATCCCGACGATGGATGGGAAGGAATAGTTGAGCTTCTCCGTCCCCAC
GGGTAATTTTGGCGACGTTTTGGCCGGCTACTATGCCAAGCGCATGGGGC
TGCCGGTAGAGCAGTTGCTGGTCGCTACCAACGTGAATGACATCTTGCAC
CGTTTTTTCGAGACCGGGAATTATCACAAGGCAGATGTGACTCAGACGCA
CTCACCCTCGATGGATATTTCGATCTCCTCAAATTTTGAGCGATATCTCT
TTGAGTTGGCAGGGAGGGATCATGGCAAGCTGAAGGGTTGGATGACGACG
TTTGAGACAACAGGGGAGCTGAGCTTGGAGGGAGACTTGCTGGAGAAGGC
GCGAGAGGACTTCATTTCGGGCCGGGGAGATGAAGAGCAGATGGTGGCTC
GCACGCTATACTGCTCCACTCGGGGTGGCGTCAAGGATGCCACCTTCGAG
GAGGTGGTGTTGGGCGGACTGGCCCCCGACCGTGGGTTGTATGTGCCCCA
AGTCATGCCAAAATTTACGTCTGAGGAGCTGGAGGGGATGCGCAGCATGA
CGTTCCCCGAGCTGGCCTTCGCCATTGTTTCGCGTTTTGTGGGAGAGAAG
GACATCCCAGCCAAGGATTTGAAGGACATTATTGATCGTAGCTACTCCAC
TTTTCGCACGGCTGACGTCTCGCCGGTGAAGCAAGTGGGCTCGGCTTGGA
TTTTGGAGCTTTTCCACGGGCCGACATTTGCGTTCAAAGACGTGGCCTTA
CAATTGTTGGGAAATTTGTTTGAGTATTTCTTGTCAAAGCGTTCGGGTCT
GGACGGGTTTTTGACGATTCTGGGTGCGACTTCGGGAGATACGGGCTCGG
CTGCTATTTATGGCTTGAGGGGGAAGGCCAATGTTCGTTGTTTTATTCTT
TATCCAAAGGGGAGGACTAGCGCGATTCAGGAACGACAAATGACGACGGT
GCCTGATAAAAATGTGCAGTGTGTTGCGATTGAAGGGACATTTGATGACT
GTCAGAATATCGTGAAAGCGGCTTTTCAGGATAAGGAGTTCCGGGAGGAA
GTGAGGTTGGGAGCCGTGAATTCGATAAATTGGGCACGTGTCTTGGCACA
GATTACCTACTATTACTGGGCATATTTTCGTATCACAGACTTTGACCCGT
CCATAGATAAG

Synonyms

Publications