jgi.p|Nanoce1779_2|421144, mRNA_3995 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|421144
Unique Name	mRNA_3995
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1802
Alignment location	scaffold_8:583615..585849 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	421230
Track	FilteredModels2
ProteinId	421144

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:583615..585849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|421144	gene_3995	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|421144	mRNA_3995-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3995	CDS_3995	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:583615..585849+
coding sequence from alignment at scaffold_8:583615..585849+

mRNA sequence

>mRNA_3995 ID=mRNA_3995|Name=jgi.p|Nanoce1779_2|421144|organism=Nannochloropsis oceanica|type=mRNA|length=1802bp
GGCATCGCTGCATTGCTGTACTTCACCCAGAACTTTCTTGACAACAACAC
TGTCACGTCTATTCCACGCCACGCACCCACTACCACTAGATTTGACTTTC
TCGCTCGCTGTCGTTCTGTCTGGTAATCTCGCCCTGGTGTCAAGCCAAAG
GCGCGATCATGACGCCCACGGACGACTCTGCGGAATGCTACCTTGATATA
AGGCCCGACCACGACTTCTCCTACCAAAACTTGCCGTACGGCGTCTTCTC
GACGCCCCATACGGCACCACGCGTGGGCGTGGCTATCGGTGACTGGGTGC
TGGACTTGTCTGTGTTGGCGGAGGAGACGGATGTCTTCAGTTTCGATGCC
AGCTGCTTCCACGAGCCGGCACTCAACGCCTTCATGGCCCAGCCTCGCGC
CGTTTGGACCACTGCACGCGCCACGATTCAGCGCCTGCTCTCCAAGACAG
AGCCCGTACTCCAAGACAATGCGGCCTTGCGCGCCCGCGCCCTCCTGCCG
ATGGACACAGTGCTGATGCACTTGCCGGCCGAAATTGGGGATTACACGGA
TTTCTACTCCTCCCGGGAGCATGCCACTAATGTGGGGATCATGTTTCGTG
GGAAGGAAAATGCGCTGCAGCCAAACTGGCTCCACCTCCCCGTTGGGTAC
CATGGCCGGGCATCAAGCGTCGTCGTCTCCGGCACGCCTGTCGTTCGGCC
CCAAGGGCAATTACAAGCTGATCCCACTGATGAGAAAAAAGGCTCCAACT
ACGGTCCCTGTCGCCTTCTCGACTTCGAGCTCGAAATCGGCGCTTTCGTC
GGTGGCGCCCCCAACCCCCTCGGGCGTCCATTGACCATGGCCGAAGCCGA
CGACCACCTCTTCGGCTTGGTTCTCATGAATGACTGGTCCGCCCGGGACA
TCCAAAAATGGGAATACGTCCCCCTCGGACCCTTCACTGCAAAGAATTTT
GCCACGTCAATCAGCCCTTGGGTGGTAACTCTCGATGCCCTCCGCCCTTT
CCTCTGCCCCACCAGCGCGGGCACCCAGGACAACCCTGTCCCTCTCCCTT
ACCTCCAGGATCCTTCGTATGCGTCGTATGATATTCAGCTAGAAGTTGGG
CTGCAGACCCCGGCGCTTGCTGCACCTCACACGATCTCTCGGTCGAATTT
TAGGCATCTGTACTGGACGATCAAGCAGCAGTTGGTGCATCATTCCGTGA
CCGGGTGCAACCTCCGCCCCGGCGACCTGCTTGGAAGTGGTACCATCAGC
GGGAGCAACGACACAGCCTTGGGATCGATGCTGGAATTGAGCTGGAAGGG
CACAAGAGACGTCACGTTGAGTGACGGGTCGACTAGAAAATTCTTGCAGG
ACGGAGATACAGTCGTGTTGAAGGGCTGGAGTCAGGGGCAGAACTTCCGG
GTCGGGTTTGGGGAGTGTGCCGGGAGAATACTGCCAGTTGGGGCAGGCCC
AGAGATGGCTGCGGTGGAAACGGCGGGGGCATGGAGGGAGGGAAGGAGGT
GGGGGGGGTTGAAATTGCATGGGTATTGGCGGTCGTCGGCGACGTGGAGA
GTCAGGATAGCGTTGGAGTGGAAGGGGTTGGAGTATGAGTACGTGCCGGT
GCATTTGGTCGAGGGGGCGCAGAAGTCGGAGGCGTAAGTAATATGTTGGG
GGAGAGAGGGAGAGATGAAGCTTTGGGGTGGGAGTGGTTTTGCGTGTCTC
TTCGTGTATCCGTCCGTGTATATATAGAGCTATAAAGCTATTCATTTATT
TGTTCCTTCATTTATTGACTCTATTTTCTACAAACTCATGAAAAACTTCT
TC

protein sequence of jgi.p|Nanoce1779_2|421144

>mRNA_3995-protein ID=mRNA_3995-protein|Name=jgi.p|Nanoce1779_2|421144|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MTPTDDSAECYLDIRPDHDFSYQNLPYGVFSTPHTAPRVGVAIGDWVLDL
SVLAEETDVFSFDASCFHEPALNAFMAQPRAVWTTARATIQRLLSKTEPV
LQDNAALRARALLPMDTVLMHLPAEIGDYTDFYSSREHATNVGIMFRGKE
NALQPNWLHLPVGYHGRASSVVVSGTPVVRPQGQLQADPTDEKKGSNYGP
CRLLDFELEIGAFVGGAPNPLGRPLTMAEADDHLFGLVLMNDWSARDIQK
WEYVPLGPFTAKNFATSISPWVVTLDALRPFLCPTSAGTQDNPVPLPYLQ
DPSYASYDIQLEVGLQTPALAAPHTISRSNFRHLYWTIKQQLVHHSVTGC
NLRPGDLLGSGTISGSNDTALGSMLELSWKGTRDVTLSDGSTRKFLQDGD
TVVLKGWSQGQNFRVGFGECAGRILPVGAGPEMAAVETAGAWREGRRWGG
LKLHGYWRSSATWRVRIALEWKGLEYEYVPVHLVEGAQKSEA*

mRNA from alignment at scaffold_8:583615..585849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3995 ID=mRNA_3995|Name=jgi.p|Nanoce1779_2|421144|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp|location=Sequence derived from alignment at scaffold_8:583615..585849+ (Nannochloropsis oceanica)
GGCATCGCTGCATTGCTGTACTTCACCCAGAACTTTCTTGACAACAACAC
TGTCACGTCTATTCCACGCCACGCACCCACTACCACTAGATTTGACTTTC
TCGCTCGCTGTCGTTCTGTCTGGTAATCTCGCCCTGGTGTCAAGCCAAAG
GCGCGATCATGACGCCCACGGACGACTCTGCGGAATGCTACCTTGATATA
AGGCCCGACCACGACTTCTCCTACCAAAACTTGCCGTACGGCGTCTTCTC
GACGCCCCATACGGCACCACGCGTGGGCGTGGCTATCGGTGACTGGGTGC
TGGACTTGTCTGTGTTGGCGGAGGAGACGGATGTCTTCAGGTGCGTTGGT
TGGAATGAGCAGGGAGGGGGAGGTGGTGGGAGGTTTCCTTTTTCCTTCTT
CCCCACATGCATGTGTCAAAGCCGCACAAGCCTCATGATGATTCAATCTG
TCCGTGGGGTTGTGATGAATTATGCGGTACAGTCTCGGCCTGCTTCGGCG
CGTGCCATGAGAAGCTCTCCCCGTGGGTAAACTGAAATACCGAGCCAAGA
CAAGTAACCAACCTGCACATCTCCCCTCCCACTTTATCCTCCCTCCACCA
CCAGTTTCGATGCCAGCTGCTTCCACGAGCCGGCACTCAACGCCTTCATG
GCCCAGCCTCGCGCCGTTTGGACCACTGCACGCGCCACGATTCAGCGCCT
GCTCTCCAAGACAGAGCCCGTACTCCAAGACAATGCGGCCTTGCGCGCCC
GCGCCCTCCTGCCGATGGACACAGTGCTGATGCACTTGCCGGCCGAAATT
GGGGATTACACGGATTTCTACTCCTCCCGGGAGCATGCCACTAATGTGGG
GATCATGTTTCGTGGGAAGGAAAATGCGCTGCAGCCAAACTGGCTCCACC
TCCCCGTTGGGTACCATGGCCGGGCATCAAGCGTCGTCGTCTCCGGCACG
CCTGTCGTTCGGCCCCAAGGGCAATTACAAGCTGATCCCACTGATGAGGT
ACATCCGTTGTGCGTCTAGCTTGTTGGCTTTTTGGGAGTGCCTGAGCTGT
CTCGCTTGCTGTCCCTCGTGTCAATTTCTCGCACGCATGCCTCTCGCTCT
CAGTCCCCTCGCTTCCTCACTCATCCACCAAACTCCTCCACCCCAACCCC
CAACACTATAAAAACAGAAAAAAGGCTCCAACTACGGTCCCTGTCGCCTT
CTCGACTTCGAGCTCGAAATCGGCGCTTTCGTCGGTGGCGCCCCCAACCC
CCTCGGGCGTCCATTGACCATGGCCGAAGCCGACGACCACCTCTTCGGCT
TGGTTCTCATGAATGACTGGTCCGCCCGGGACATCCAAAAATGGGAATAC
GTCCCCCTCGGACCCTTCACTGCAAAGAATTTTGCCACGTCAATCAGCCC
TTGGGTGGTAACTCTCGATGCCCTCCGCCCTTTCCTCTGCCCCACCAGCG
CGGGCACCCAGGACAACCCTGTCCCTCTCCCTTACCTCCAGGATCCTTCG
TATGCGTCGTATGATATTCAGCTAGAAGTTGGGCTGCAGACCCCGGCGCT
TGCTGCACCTCACACGATCTCTCGGTCGAATTTTAGGCATCTGTACTGGA
CGATCAAGCAGCAGTTGGTGCATCATTCCGTGACCGGGTGCAACCTCCGC
CCCGGCGACCTGCTTGGAAGTGGTACCATCAGCGGGAGCAACGACACAGC
CTTGGGATCGATGCTGGAATTGAGCTGGAAGGGCACAAGAGACGTCACGT
TGAGTGACGGGTCGACTAGAAAATTCTTGCAGGACGGAGATACAGTCGTG
TTGAAGGGCTGGAGTCAGGGGCAGAACTTCCGGGTCGGGTTTGGGGAGTG
TGCCGGGAGAATACTGCCAGTTGGGGCAGGCCCAGAGATGGCTGCGGTGG
AAACGGCGGGGGCATGGAGGGAGGGAAGGAGGTGGGGGGGGTTGAAATTG
CATGGGTATTGGCGGTCGTCGGCGACGTGGAGAGTCAGGATAGCGTTGGA
GTGGAAGGGGTTGGAGTATGAGTACGTGCCGGTGCATTTGGTCGAGGGGG
CGCAGAAGTCGGAGGCGTAAGTAATATGTTGGGGGAGAGAGGGAGAGATG
AAGCTTTGGGGTGGGAGTGGTTTTGCGTGTCTCTTCGTGTATCCGTCCGT
GTATATATAGAGCTATAAAGCTATTCATTTATTTGTTCCTTCATTTATTG
ACTCTATTTTCTACAAACTCATGAAAAACTTCTTC

Coding sequence (CDS) from alignment at scaffold_8:583615..585849+

>mRNA_3995 ID=mRNA_3995|Name=jgi.p|Nanoce1779_2|421144|organism=Nannochloropsis oceanica|type=CDS|length=4437bp|location=Sequence derived from alignment at scaffold_8:583615..585849+ (Nannochloropsis oceanica)
ATGACGCCCACGGACGACTCTGCGGAATGCTACCTTGATATAAGGCCCGA
CCACGACTTCTCCTACCAAAACTTGCCGTACGGCGTCTTCTCGACGCCCC
ATACGGCACCACGCGTGGGCGTGGCTATCGGTGACTGGGTGCTGGACTTG
TCTGTGTTGGCGGAGGAGACGGATGTCTTCAGTTTCGATGCCAGCTGCTT
CCACGAGCCGGCACTCAACGCCTTCATGGCCCAGCCTCGCGCCGTTTGGA
CCACTGCACGCGCCACGATTCAGCGCCTGCTCTCCAAGACAGAGCCCGTA
CTCCAAGACAATGCGGCCTTGCGCGCCCGCGCCCTCCTGCCGATGGACAC
AGTGCTGATGCACTTGCCGGCCGAAATTGGGGATTACACGGATTTCTACT
CCTCCCGGGAGCATGCCACTAATGTGGGGATCATGTTTCGTGGGAAGGAA
AATGCGCTGCAGCCAAACTGGCTCCACCTCCCCGTTGGGTACCATGGCCG
GGCATCAAGCGTCGTCGTCTCCGGCACGCCTGTCGTTCGGCCCCAAGGGC
AATTACAAGCTGATCCCACTGATGAGAAAAAAGGCTCCAACTACGGTCCC
TGTCGCCTTCTCGACTTCGAGCTCGAAATCGGCGCTTTCGTCGGTGGCGC
CCCCAACCCCCTCGGGCGTCCATTGACCATGGCCGAAGCCGACGACCACC
TCTTCGGCTTGGTTCTCATGAATGACTGGTCCGCCCGGGACATCCAAAAA
TGGGAATACGTCCCCCTCGGACCCTTCACTGCAAAGAATTTTGCCACGTC
AATCAGCCCTTGGGTGGTAACTCTCGATGCCCTCCGCCCTTTCCTCTGCC
CCACCAGCGCGGGCACCCAGGACAACCCTGTCCCTCTCCCTTACCTCCAG
GATCCTTCGTATGCGTCGTATGATATTCAGCTAGAAGTTGGGCTGCAGAC
CCCGGCGCTTGCTGCACCTCACACGATCTCTCGGTCGAATTTTAGGCATC
TGTACTGGACGATCAAGCAGCAGTTGGTGCATCATTCCGTGACCGGGTGC
AACCTCCGCCCCGGCGACCTGCTTGGAAGTGGTACCATCAGCGGGAGCAA
CGACACAGCCTTGGGATCGATGCTGGAATTGAGCTGGAAGGGCACAAGAG
ACGTCACGTTGAGTGACGGGTCGACTAGAAAATTCTTGCAGGACGGAGAT
ACAGTCGTGTTGAAGGGCTGGAGTCAGGGGCAGAACTTCCGGGTCGGGTT
TGGGGAGTGTGCCGGGAGAATACTGCCAGTTGGGGCAGGCCCAGAGATGG
CTGCGGTGGAAACGGCGGGGGCATGGAGGGAGGGAAGGAGGTGGGGGGGG
TTGAAATTGCATGGGTATTGGCGGTCGTCGGCGACGTGGAGAGTCAGGAT
AGCGTTGGAGTGGAAGGGGTTGGAGTATGAGTACGTGCCGGTGCATTTGG
TCGAGGGGGCGCAGAAGTCGGAGGCGTAAATGACGCCCACGGACGACTCT
GCGGAATGCTACCTTGATATAAGGCCCGACCACGACTTCTCCTACCAAAA
CTTGCCGTACGGCGTCTTCTCGACGCCCCATACGGCACCACGCGTGGGCG
TGGCTATCGGTGACTGGGTGCTGGACTTGTCTGTGTTGGCGGAGGAGACG
GATGTCTTCAGTTTCGATGCCAGCTGCTTCCACGAGCCGGCACTCAACGC
CTTCATGGCCCAGCCTCGCGCCGTTTGGACCACTGCACGCGCCACGATTC
AGCGCCTGCTCTCCAAGACAGAGCCCGTACTCCAAGACAATGCGGCCTTG
CGCGCCCGCGCCCTCCTGCCGATGGACACAGTGCTGATGCACTTGCCGGC
CGAAATTGGGGATTACACGGATTTCTACTCCTCCCGGGAGCATGCCACTA
ATGTGGGGATCATGTTTCGTGGGAAGGAAAATGCGCTGCAGCCAAACTGG
CTCCACCTCCCCGTTGGGTACCATGGCCGGGCATCAAGCGTCGTCGTCTC
CGGCACGCCTGTCGTTCGGCCCCAAGGGCAATTACAAGCTGATCCCACTG
ATGAGAAAAAAGGCTCCAACTACGGTCCCTGTCGCCTTCTCGACTTCGAG
CTCGAAATCGGCGCTTTCGTCGGTGGCGCCCCCAACCCCCTCGGGCGTCC
ATTGACCATGGCCGAAGCCGACGACCACCTCTTCGGCTTGGTTCTCATGA
ATGACTGGTCCGCCCGGGACATCCAAAAATGGGAATACGTCCCCCTCGGA
CCCTTCACTGCAAAGAATTTTGCCACGTCAATCAGCCCTTGGGTGGTAAC
TCTCGATGCCCTCCGCCCTTTCCTCTGCCCCACCAGCGCGGGCACCCAGG
ACAACCCTGTCCCTCTCCCTTACCTCCAGGATCCTTCGTATGCGTCGTAT
GATATTCAGCTAGAAGTTGGGCTGCAGACCCCGGCGCTTGCTGCACCTCA
CACGATCTCTCGGTCGAATTTTAGGCATCTGTACTGGACGATCAAGCAGC
AGTTGGTGCATCATTCCGTGACCGGGTGCAACCTCCGCCCCGGCGACCTG
CTTGGAAGTGGTACCATCAGCGGGAGCAACGACACAGCCTTGGGATCGAT
GCTGGAATTGAGCTGGAAGGGCACAAGAGACGTCACGTTGAGTGACGGGT
CGACTAGAAAATTCTTGCAGGACGGAGATACAGTCGTGTTGAAGGGCTGG
AGTCAGGGGCAGAACTTCCGGGTCGGGTTTGGGGAGTGTGCCGGGAGAAT
ACTGCCAGTTGGGGCAGGCCCAGAGATGGCTGCGGTGGAAACGGCGGGGG
CATGGAGGGAGGGAAGGAGGTGGGGGGGGTTGAAATTGCATGGGTATTGG
CGGTCGTCGGCGACGTGGAGAGTCAGGATAGCGTTGGAGTGGAAGGGGTT
GGAGTATGAGTACGTGCCGGTGCATTTGGTCGAGGGGGCGCAGAAGTCGG
AGGCGTAAATGACGCCCACGGACGACTCTGCGGAATGCTACCTTGATATA
AGGCCCGACCACGACTTCTCCTACCAAAACTTGCCGTACGGCGTCTTCTC
GACGCCCCATACGGCACCACGCGTGGGCGTGGCTATCGGTGACTGGGTGC
TGGACTTGTCTGTGTTGGCGGAGGAGACGGATGTCTTCAGTTTCGATGCC
AGCTGCTTCCACGAGCCGGCACTCAACGCCTTCATGGCCCAGCCTCGCGC
CGTTTGGACCACTGCACGCGCCACGATTCAGCGCCTGCTCTCCAAGACAG
AGCCCGTACTCCAAGACAATGCGGCCTTGCGCGCCCGCGCCCTCCTGCCG
ATGGACACAGTGCTGATGCACTTGCCGGCCGAAATTGGGGATTACACGGA
TTTCTACTCCTCCCGGGAGCATGCCACTAATGTGGGGATCATGTTTCGTG
GGAAGGAAAATGCGCTGCAGCCAAACTGGCTCCACCTCCCCGTTGGGTAC
CATGGCCGGGCATCAAGCGTCGTCGTCTCCGGCACGCCTGTCGTTCGGCC
CCAAGGGCAATTACAAGCTGATCCCACTGATGAGAAAAAAGGCTCCAACT
ACGGTCCCTGTCGCCTTCTCGACTTCGAGCTCGAAATCGGCGCTTTCGTC
GGTGGCGCCCCCAACCCCCTCGGGCGTCCATTGACCATGGCCGAAGCCGA
CGACCACCTCTTCGGCTTGGTTCTCATGAATGACTGGTCCGCCCGGGACA
TCCAAAAATGGGAATACGTCCCCCTCGGACCCTTCACTGCAAAGAATTTT
GCCACGTCAATCAGCCCTTGGGTGGTAACTCTCGATGCCCTCCGCCCTTT
CCTCTGCCCCACCAGCGCGGGCACCCAGGACAACCCTGTCCCTCTCCCTT
ACCTCCAGGATCCTTCGTATGCGTCGTATGATATTCAGCTAGAAGTTGGG
CTGCAGACCCCGGCGCTTGCTGCACCTCACACGATCTCTCGGTCGAATTT
TAGGCATCTGTACTGGACGATCAAGCAGCAGTTGGTGCATCATTCCGTGA
CCGGGTGCAACCTCCGCCCCGGCGACCTGCTTGGAAGTGGTACCATCAGC
GGGAGCAACGACACAGCCTTGGGATCGATGCTGGAATTGAGCTGGAAGGG
CACAAGAGACGTCACGTTGAGTGACGGGTCGACTAGAAAATTCTTGCAGG
ACGGAGATACAGTCGTGTTGAAGGGCTGGAGTCAGGGGCAGAACTTCCGG
GTCGGGTTTGGGGAGTGTGCCGGGAGAATACTGCCAGTTGGGGCAGGCCC
AGAGATGGCTGCGGTGGAAACGGCGGGGGCATGGAGGGAGGGAAGGAGGT
GGGGGGGGTTGAAATTGCATGGGTATTGGCGGTCGTCGGCGACGTGGAGA
GTCAGGATAGCGTTGGAGTGGAAGGGGTTGGAGTATGAGTACGTGCCGGT
GCATTTGGTCGAGGGGGCGCAGAAGTCGGAGGCGTAA

Synonyms

Publications