jgi.p|Nanoce1779_2|586056, mRNA_3992 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586056
Unique NamemRNA_3992
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length743
Alignment locationscaffold_8:575848..576590 +

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Properties
Property NameValue
TranscriptId586142
TrackFilteredModels2
ProteinId586056
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:575848..576590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586056gene_3992Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586056mRNA_3992-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3992CDS_3992Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3992 ID=mRNA_3992|Name=jgi.p|Nanoce1779_2|586056|organism=Nannochloropsis oceanica|type=mRNA|length=743bp
TAACGATTATGAGGTATTCCTTTTTTGATTGCTTGCTTCTGAAGTCTGCT
GCACAACACACACGAAGAGATGTCTTATTCAGGGAAGCTGCCTCCCTTCA
ATCTCTCTCTTTCTTCTCTCTTCCTCTACTTTCTTCTTTTTCTCTTTTTC
TCCCTCTCACTCTCTCTTTCTTCCTCTGCTGCGGTATCCCGTCGTTGCTG
GTGCCACGGCTACTGATCTTGGTCCTGTTCTTCCTTTGCATTGCAATGGG
CAGAAAGAGCAAGAAGAGGGGAGGGGCAGAAAAGCCTCTTGCCTACCAGT
ATCTCTCACATAAAAGCATTCTAACACCCTGTGTGTTTGCCGCTCTTTCC
GGTGCCTAGAACGTTCCCCTCTACTTCCCCGCTGTCGCGAGATAGCCTTT
CCTTCCTCTCCTATCTCGGTGATTGTTACTTATGTACGTCTGTCTGCGGC
TACTTCTGCTTCATTTTCTCTCCCCCTCCTCCGCATTATCGATTCCCCTT
TATCCTTCCCTTTAATCTTCCTCCAATCCCTTGTCTTCAAGCCAATAGCA
CACCACTCCTCGCCATACCCTCCAGGTGCGCGCTCTCGCCTCCTCTCAAT
TTTTCTAAACAATAAAAACACGAAATAAGAAAAACCAACACCACACATGA
AAGAGTCACCCTTTACGCTCCCTTCCTTTTCTCCAAACACACGACCGTCG
CTTGCTTGCTCCCATTCTCCCTCTCCCTCCCTCCTCCCTCCTT
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protein sequence of jgi.p|Nanoce1779_2|586056

>mRNA_3992-protein ID=mRNA_3992-protein|Name=jgi.p|Nanoce1779_2|586056|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MRYSFFDCLLLKSAAQHTRRDVLFREAASLQSLSFFSLPLLSSFSLFLPL
TLSFFLCCGIPSLLVPRLLILVLFFLCIAMGRKSKKRGGAEKPLAYQYLS
HKSILTPCVFAALSGA*
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mRNA from alignment at scaffold_8:575848..576590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3992 ID=mRNA_3992|Name=jgi.p|Nanoce1779_2|586056|organism=Nannochloropsis oceanica|type=mRNA|length=743bp|location=Sequence derived from alignment at scaffold_8:575848..576590+ (Nannochloropsis oceanica)
TAACGATTATGAGGTATTCCTTTTTTGATTGCTTGCTTCTGAAGTCTGCT
GCACAACACACACGAAGAGATGTCTTATTCAGGGAAGCTGCCTCCCTTCA
ATCTCTCTCTTTCTTCTCTCTTCCTCTACTTTCTTCTTTTTCTCTTTTTC
TCCCTCTCACTCTCTCTTTCTTCCTCTGCTGCGGTATCCCGTCGTTGCTG
GTGCCACGGCTACTGATCTTGGTCCTGTTCTTCCTTTGCATTGCAATGGG
CAGAAAGAGCAAGAAGAGGGGAGGGGCAGAAAAGCCTCTTGCCTACCAGT
ATCTCTCACATAAAAGCATTCTAACACCCTGTGTGTTTGCCGCTCTTTCC
GGTGCCTAGAACGTTCCCCTCTACTTCCCCGCTGTCGCGAGATAGCCTTT
CCTTCCTCTCCTATCTCGGTGATTGTTACTTATGTACGTCTGTCTGCGGC
TACTTCTGCTTCATTTTCTCTCCCCCTCCTCCGCATTATCGATTCCCCTT
TATCCTTCCCTTTAATCTTCCTCCAATCCCTTGTCTTCAAGCCAATAGCA
CACCACTCCTCGCCATACCCTCCAGGTGCGCGCTCTCGCCTCCTCTCAAT
TTTTCTAAACAATAAAAACACGAAATAAGAAAAACCAACACCACACATGA
AAGAGTCACCCTTTACGCTCCCTTCCTTTTCTCCAAACACACGACCGTCG
CTTGCTTGCTCCCATTCTCCCTCTCCCTCCCTCCTCCCTCCTT
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Coding sequence (CDS) from alignment at scaffold_8:575848..576590+

>mRNA_3992 ID=mRNA_3992|Name=jgi.p|Nanoce1779_2|586056|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_8:575848..576590+ (Nannochloropsis oceanica)
ATGAGGTATTCCTTTTTTGATTGCTTGCTTCTGAAGTCTGCTGCACAACA
CACACGAAGAGATGTCTTATTCAGGGAAGCTGCCTCCCTTCAATCTCTCT
CTTTCTTCTCTCTTCCTCTACTTTCTTCTTTTTCTCTTTTTCTCCCTCTC
ACTCTCTCTTTCTTCCTCTGCTGCGGTATCCCGTCGTTGCTGGTGCCACG
GCTACTGATCTTGGTCCTGTTCTTCCTTTGCATTGCAATGGGCAGAAAGA
GCAAGAAGAGGGGAGGGGCAGAAAAGCCTCTTGCCTACCAGTATCTCTCA
CATAAAAGCATTCTAACACCCTGTGTGTTTGCCGCTCTTTCCGGTGCCTA
G
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Synonyms
Publications