jgi.p|Nanoce1779_2|586052, mRNA_3990 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586052
Unique Name	mRNA_3990
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1374
Alignment location	scaffold_8:571453..573271 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586138
Track	FilteredModels2
ProteinId	586052

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:571453..573271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586052	gene_3990	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586052	mRNA_3990-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3990	CDS_3990	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:571453..573271+
coding sequence from alignment at scaffold_8:571453..573271+

mRNA sequence

>mRNA_3990 ID=mRNA_3990|Name=jgi.p|Nanoce1779_2|586052|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp
GAAACATGCCGCGCTCGGCATCGTCGCTTGTTGTGGCTCTGGCCGCCGTG
CTCTTTGCGCCACCATGCCCCTGCACCGGCTTCCTCTTGCCCACCAGTCC
TTCAACATCGCGTTCGTCATCGTCCTCCAGCAGCAGCAGCAGCAGCGCAC
CGCGACTCACAGTCCCCTCAACACCACAAATCACCACCACTACACCGCAT
TCAAGCTCAATCGACGGGGGACGAGGGGACAGCAAAGTAAAGCCATTGGA
TTGGCTGGAAGAGGTGCGGCGGAAGAACTACGAGGTGCAGCAGCTACAAG
AGACGGAGGAAGGGGCGCGGCTGCGGAATCGCTTGAGTCGCATGAGCTTG
GAAGGCGGGTATCGTGTGGCACGGGCCATAAAGCGCAGCGCCAAGGACCA
AGTCCATTTGATGAGCGTGGTGGCGGAGATCAAGCGCCGAACACCAACGG
GCGCAGAGACTCCGACTGAGGTTGCTGCCATTTCCGACGTGGGGTTGATT
GCTCGACAGCTTGCTGATTGCGGTGCCGACGTCCTCCTTGTGACGACAGA
CGAGATATGTTACGGAGGCTCAGTGGAGGACCTACGAGCCGTCAAGGCAG
CTTTTGCCGATGTACCAGAGGGTGACAGGCCGCCCATCGTAGCTAAGGAC
ATATACATCCACCCACTACAAATCGCCCAGGCCATTGACGCGGGGGCAGA
TGGCGTACTCCTTATGGCTAGTTTGATGGGCGCCTCCCTTAACGAGCTCC
TGGACGCCTGCACCTGCCTCGGTACCGAAGCCCTTGTTGAGGTCCACACA
GTCGCCGAGCTCGAAAAGGCCCTTGAACTAGGCGCCACCAACATCGTCGC
CACCAACTGGGATCGGATCGAGAATGTGCTCTACCCCAATCAAGCGAAAG
GGCTCAAAGGGCTTATTCCTGATCTGATCGTGGCCATTGGCGCCGGTGGG
GTGGGAACAGTTCAGGATGCCGCAGAACTAGCGGACATGGGCTACGATGC
TGCTGTATTGGGAAGGGGTTTGGCTTCCTCGGCGGATATTGAACGGCTGA
TTTCGACGATCCGGTCGAGGGAGTCCTTGCCCAATTTGTTGACCGGCGCG
GGGATGATGGCGGAGGAGCTAAAGCGAGGGGAAGGCGACTAATGGGCAGG
GTAAAATCCAAACATTTCGAAATTAAAACAGATATAGCATGGCCAATGTA
GAAATAAAAAGAAACATGACAAAGCAAGACTACGTGCTTTGGTGCAAAGC
CGAGATAATTAAAACAATGTGCGTTCCGATCTTCTGCTTTTGGGAATTTG
GCGAGGAAATGATCGCGATTGAAGTGCGGCTTGGACCTCGGACCAAGCTC
TGTCAAGTGGCGTCTGCAAGGCCA

protein sequence of jgi.p|Nanoce1779_2|586052

>mRNA_3990-protein ID=mRNA_3990-protein|Name=jgi.p|Nanoce1779_2|586052|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPRSASSLVVALAAVLFAPPCPCTGFLLPTSPSTSRSSSSSSSSSSSAPR
LTVPSTPQITTTTPHSSSIDGGRGDSKVKPLDWLEEVRRKNYEVQQLQET
EEGARLRNRLSRMSLEGGYRVARAIKRSAKDQVHLMSVVAEIKRRTPTGA
ETPTEVAAISDVGLIARQLADCGADVLLVTTDEICYGGSVEDLRAVKAAF
ADVPEGDRPPIVAKDIYIHPLQIAQAIDAGADGVLLMASLMGASLNELLD
ACTCLGTEALVEVHTVAELEKALELGATNIVATNWDRIENVLYPNQAKGL
KGLIPDLIVAIGAGGVGTVQDAAELADMGYDAAVLGRGLASSADIERLIS
TIRSRESLPNLLTGAGMMAEELKRGEGD*

mRNA from alignment at scaffold_8:571453..573271+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3990 ID=mRNA_3990|Name=jgi.p|Nanoce1779_2|586052|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at scaffold_8:571453..573271+ (Nannochloropsis oceanica)
GAAACATGCCGCGCTCGGCATCGTCGCTTGTTGTGGCTCTGGCCGCCGTG
CTCTTTGCGCCACCATGCCCCTGCACCGGCTTCCTCTTGCCCACCAGTCC
TTCAACATCGCGTTCGTCATCGTCCTCCAGCAGCAGCAGCAGCAGCGCAC
CGCGACTCACAGTCCCCTCAACACCACAAATCACCACCACTACACCGCAT
TCAAGCTCAATCGACGGGGGACGAGGGGACAGCAAAGTAAAGCCATTGGA
TTGGCTGGAAGAGGTGCGGCGGAAGAACTACGAGGTGCAGCAGCTACAAG
AGACGGAGGAAGGGGCGCGGCTGCGGAATCGCTTGAGTCGCATGAGCTTG
GAAGGCGGGTATCGTGTGGCACGGGCCATAAAGCGCAGCGCCAAGGACCA
AGTCCATTTGATGAGCGTGGTGGCGGAGATCAAGCGCCGAACACCAACGG
GCGCAGAGACTCCGACTGAGGTTGCTGCCATTTCCGACGTGGGGTTGATT
GCTCGACAGGTAGGGAGAGGAATATTCAGGAAGGGATGACAAGCAAAGGA
TGACGAGCGGAGCATATTTGACACATTCTCTCCTTCCTTATACATGTGCA
GCTTGCTGATTGCGGTGCCGACGTCCTCCTTGTGACGACAGACGAGATAT
GTTACGGAGGCTCAGTGGAGGACCTACGAGCCGTCAAGGCAGCTTTTGCC
GATGTACCAGAGGGTGACAGGCCGCCCATCGTAGCTAAGGACATATACAT
CCACCCACTACAAATCGCCCAGGCCATTGACGCGGGGGCAGATGGCGTAC
TCCTTATGGCTAGTTTGGTACGTTGGGTGGATTAATGCTATCAAAGAGCA
AGCAAAGGCCTGCGCGCATGCATCCTCAGCCGTCATGTGAGCTTGATGGC
GTGAACTCTTCCTCTGAGCAATCCTAAACAAACATAAACGATGTCAAAAC
ACCCTCAAGACGCCCTCCTCCACCATACAAAACCCATAAACTCACAGATG
GGCGCCTCCCTTAACGAGCTCCTGGACGCCTGCACCTGCCTCGGTACCGA
AGCCCTTGTTGAGGTCCACACAGTCGCCGAGCTCGAAAAGGCCCTTGAAC
TAGGCGCCACCAACATCGTCGCCACCAACTGGGATCGGATCGAGAATGTG
CTCTACCCCAATCAAGCGAAAGGGCTCAAAGGGCTTATTCCTGATCTGAT
CGTGGCCATTGGCGCCGGTGGGGTGGGAACAGTTCAGGATGCCGCAGAAC
TAGCGGACATGGGCTACGATGCTGCTGTATTGGGAAGGGGTTTGGCTTCC
TCGGCGGATATTGAACGGCTGATTTCGACGATCCGGTCGAGGGAGTCCTT
GCCCAATTTGTTGACCGGCGCGGGGATGATGGCGGAGGAGCTAAAGCGAG
GGGAAGGCGACTAATGGGCAGGGTAAAATCCAAACATTTCGAAATTAAAA
CAGATATAGCATGGCCAATGTAGAAATAAAAAGAAACATGACAAAGCAAG
ACTACGTGCTTTGGTGCAAAGCCGAGATAATTAAAACAATGTGCGTTCCG
ATCTTCTGCTTTTGGGAATTTGGCGAGGAAATGATCGCGATTGAAGTGCG
GCTTGGACCTCGGACCAAGCTCTGGTAAGCACTCCCTCCCACCCAAAAAC
ACTCTCAATGTCCCTCACGTATACAGCAAGGTGCCCAGGACATGCTGGCT
CTACTCAGCGCAACAATTCATGGCCTCACATTCTTGTCCAACCCCGCCCG
TTCCTCACCCGCCTTCCCGCGTCACACACCATACGGCATACATACAGTCA
AGTGGCGTCTGCAAGGCCA

Coding sequence (CDS) from alignment at scaffold_8:571453..573271+

>mRNA_3990 ID=mRNA_3990|Name=jgi.p|Nanoce1779_2|586052|organism=Nannochloropsis oceanica|type=CDS|length=3411bp|location=Sequence derived from alignment at scaffold_8:571453..573271+ (Nannochloropsis oceanica)
ATGCCGCGCTCGGCATCGTCGCTTGTTGTGGCTCTGGCCGCCGTGCTCTT
TGCGCCACCATGCCCCTGCACCGGCTTCCTCTTGCCCACCAGTCCTTCAA
CATCGCGTTCGTCATCGTCCTCCAGCAGCAGCAGCAGCAGCGCACCGCGA
CTCACAGTCCCCTCAACACCACAAATCACCACCACTACACCGCATTCAAG
CTCAATCGACGGGGGACGAGGGGACAGCAAAGTAAAGCCATTGGATTGGC
TGGAAGAGGTGCGGCGGAAGAACTACGAGGTGCAGCAGCTACAAGAGACG
GAGGAAGGGGCGCGGCTGCGGAATCGCTTGAGTCGCATGAGCTTGGAAGG
CGGGTATCGTGTGGCACGGGCCATAAAGCGCAGCGCCAAGGACCAAGTCC
ATTTGATGAGCGTGGTGGCGGAGATCAAGCGCCGAACACCAACGGGCGCA
GAGACTCCGACTGAGGTTGCTGCCATTTCCGACGTGGGGTTGATTGCTCG
ACAGCTTGCTGATTGCGGTGCCGACGTCCTCCTTGTGACGACAGACGAGA
TATGTTACGGAGGCTCAGTGGAGGACCTACGAGCCGTCAAGGCAGCTTTT
GCCGATGTACCAGAGGGTGACAGGCCGCCCATCGTAGCTAAGGACATATA
CATCCACCCACTACAAATCGCCCAGGCCATTGACGCGGGGGCAGATGGCG
TACTCCTTATGGCTAGTTTGATGGGCGCCTCCCTTAACGAGCTCCTGGAC
GCCTGCACCTGCCTCGGTACCGAAGCCCTTGTTGAGGTCCACACAGTCGC
CGAGCTCGAAAAGGCCCTTGAACTAGGCGCCACCAACATCGTCGCCACCA
ACTGGGATCGGATCGAGAATGTGCTCTACCCCAATCAAGCGAAAGGGCTC
AAAGGGCTTATTCCTGATCTGATCGTGGCCATTGGCGCCGGTGGGGTGGG
AACAGTTCAGGATGCCGCAGAACTAGCGGACATGGGCTACGATGCTGCTG
TATTGGGAAGGGGTTTGGCTTCCTCGGCGGATATTGAACGGCTGATTTCG
ACGATCCGGTCGAGGGAGTCCTTGCCCAATTTGTTGACCGGCGCGGGGAT
GATGGCGGAGGAGCTAAAGCGAGGGGAAGGCGACTAAATGCCGCGCTCGG
CATCGTCGCTTGTTGTGGCTCTGGCCGCCGTGCTCTTTGCGCCACCATGC
CCCTGCACCGGCTTCCTCTTGCCCACCAGTCCTTCAACATCGCGTTCGTC
ATCGTCCTCCAGCAGCAGCAGCAGCAGCGCACCGCGACTCACAGTCCCCT
CAACACCACAAATCACCACCACTACACCGCATTCAAGCTCAATCGACGGG
GGACGAGGGGACAGCAAAGTAAAGCCATTGGATTGGCTGGAAGAGGTGCG
GCGGAAGAACTACGAGGTGCAGCAGCTACAAGAGACGGAGGAAGGGGCGC
GGCTGCGGAATCGCTTGAGTCGCATGAGCTTGGAAGGCGGGTATCGTGTG
GCACGGGCCATAAAGCGCAGCGCCAAGGACCAAGTCCATTTGATGAGCGT
GGTGGCGGAGATCAAGCGCCGAACACCAACGGGCGCAGAGACTCCGACTG
AGGTTGCTGCCATTTCCGACGTGGGGTTGATTGCTCGACAGCTTGCTGAT
TGCGGTGCCGACGTCCTCCTTGTGACGACAGACGAGATATGTTACGGAGG
CTCAGTGGAGGACCTACGAGCCGTCAAGGCAGCTTTTGCCGATGTACCAG
AGGGTGACAGGCCGCCCATCGTAGCTAAGGACATATACATCCACCCACTA
CAAATCGCCCAGGCCATTGACGCGGGGGCAGATGGCGTACTCCTTATGGC
TAGTTTGATGGGCGCCTCCCTTAACGAGCTCCTGGACGCCTGCACCTGCC
TCGGTACCGAAGCCCTTGTTGAGGTCCACACAGTCGCCGAGCTCGAAAAG
GCCCTTGAACTAGGCGCCACCAACATCGTCGCCACCAACTGGGATCGGAT
CGAGAATGTGCTCTACCCCAATCAAGCGAAAGGGCTCAAAGGGCTTATTC
CTGATCTGATCGTGGCCATTGGCGCCGGTGGGGTGGGAACAGTTCAGGAT
GCCGCAGAACTAGCGGACATGGGCTACGATGCTGCTGTATTGGGAAGGGG
TTTGGCTTCCTCGGCGGATATTGAACGGCTGATTTCGACGATCCGGTCGA
GGGAGTCCTTGCCCAATTTGTTGACCGGCGCGGGGATGATGGCGGAGGAG
CTAAAGCGAGGGGAAGGCGACTAAATGCCGCGCTCGGCATCGTCGCTTGT
TGTGGCTCTGGCCGCCGTGCTCTTTGCGCCACCATGCCCCTGCACCGGCT
TCCTCTTGCCCACCAGTCCTTCAACATCGCGTTCGTCATCGTCCTCCAGC
AGCAGCAGCAGCAGCGCACCGCGACTCACAGTCCCCTCAACACCACAAAT
CACCACCACTACACCGCATTCAAGCTCAATCGACGGGGGACGAGGGGACA
GCAAAGTAAAGCCATTGGATTGGCTGGAAGAGGTGCGGCGGAAGAACTAC
GAGGTGCAGCAGCTACAAGAGACGGAGGAAGGGGCGCGGCTGCGGAATCG
CTTGAGTCGCATGAGCTTGGAAGGCGGGTATCGTGTGGCACGGGCCATAA
AGCGCAGCGCCAAGGACCAAGTCCATTTGATGAGCGTGGTGGCGGAGATC
AAGCGCCGAACACCAACGGGCGCAGAGACTCCGACTGAGGTTGCTGCCAT
TTCCGACGTGGGGTTGATTGCTCGACAGCTTGCTGATTGCGGTGCCGACG
TCCTCCTTGTGACGACAGACGAGATATGTTACGGAGGCTCAGTGGAGGAC
CTACGAGCCGTCAAGGCAGCTTTTGCCGATGTACCAGAGGGTGACAGGCC
GCCCATCGTAGCTAAGGACATATACATCCACCCACTACAAATCGCCCAGG
CCATTGACGCGGGGGCAGATGGCGTACTCCTTATGGCTAGTTTGATGGGC
GCCTCCCTTAACGAGCTCCTGGACGCCTGCACCTGCCTCGGTACCGAAGC
CCTTGTTGAGGTCCACACAGTCGCCGAGCTCGAAAAGGCCCTTGAACTAG
GCGCCACCAACATCGTCGCCACCAACTGGGATCGGATCGAGAATGTGCTC
TACCCCAATCAAGCGAAAGGGCTCAAAGGGCTTATTCCTGATCTGATCGT
GGCCATTGGCGCCGGTGGGGTGGGAACAGTTCAGGATGCCGCAGAACTAG
CGGACATGGGCTACGATGCTGCTGTATTGGGAAGGGGTTTGGCTTCCTCG
GCGGATATTGAACGGCTGATTTCGACGATCCGGTCGAGGGAGTCCTTGCC
CAATTTGTTGACCGGCGCGGGGATGATGGCGGAGGAGCTAAAGCGAGGGG
AAGGCGACTAA

Synonyms

Publications