jgi.p|Nanoce1779_2|577216, mRNA_399 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577216
Unique NamemRNA_399
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1342
Alignment locationscaffold_3:988507..990033 +

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Properties
Property NameValue
TranscriptId577302
TrackFilteredModels2
ProteinId577216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:988507..990033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577216gene_399Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577216mRNA_399-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_399CDS_399Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_399 ID=mRNA_399|Name=jgi.p|Nanoce1779_2|577216|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
TTTGAAACGGTCGTCGTGTGCCGCCGTGATTCGGTTTTGCCCCCTGCGCC
CATGCACGCTTCGTGCTTCGTCGTCGTCCGCGACTCTTCCCGGGAAACCA
GGCACAGCCTACCCACTCCCATGTACAAGAGAGACAAGCCTAACAGCCAG
CAGGACGGATTCGGTTGACTTTGTGGGTGCCAGACAGTGACTTTCACCTT
TATTCGGCCCTGGAGCCTGAGCCCATTTTTGCTTGGTCGTTCATTCCTTC
TGCTCCTGTAGCACTCGTATACCACTAGCACCATCGTTGGACCCACAGCA
CAGGTGGTGCCAGCCTTTAGAGTCCTTCTTCTGCCTTTTGCCTGGGTAGG
CGGGACGACTTCCAACCACCCGTCTTGCTCGTCCCCCCCGGTAGGCCCTT
TCTGCCGAGCACAAGACATTCATGAGCAACCTCTGAGTCTTCGTGAGTTG
ACGCTTCCGCCCACCACGACACAGTCAGGCACCACAACCCCACAGCACTC
ATACGATAGAGCCGGCATGCTGGAGACCTTCCCCTATTCACCATCATGCA
GGGCCCGGGCCCGGCGGACTGCGCCCATATATATCTTATAATAGCTCCCA
GCGAACCATATCCCTCCGGTACCACGCAAAGAGCACCTCACCACGGCGGC
TTCTCAACCGAAGAAGGTCCAATGACCAACTCGCGCAAATCACTGCCATT
GCCAGAGAATACGTTTCATCGCCTTTCACCAATCTTCGCTCACCGATACC
CATCACCTTCTCTACCCCCTAGACTCTACCATCTGATCCTAACAAATCCA
CAGAGACCACCACCATCCTGTCTCCTCAACCAAAAATGTCGTCCACTTTC
CGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCTGCTCATCCTCTTGGT
GTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAAATGCTAAGGGCAAGG
CGCTTGTTGAAGAAAACGAGGAGGATGAGTACGACGAGGAAAGGGAGATG
ATGGAGGAATTCGACGAGGACGAGGAGGATGAAGACGAGGATATTGATGA
ATGGGATGAGGAGGATATGGATGAGGAAGGAGAGGACCGGAAATTGACGA
TTGACGATTTGGACGGCATGATCGACAAAGAGGATCTGATGCGCCAGCTC
GATGCGATGGGACTGACATTGGATGATGTGGAGATTTCGTTTGATGAAGA
GGAGGAGGGGATGGATCGCGACTTGGAGGACGAGGACGAGCTCGATGAGG
AGGATGAGGAGGATTTCGATGAGGAGGAGTTCGATGAGGAGGATGAGGAG
GATCGCGACTTGGAGGAGGAAGATGAATTCGATGAGGAGGAT
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protein sequence of jgi.p|Nanoce1779_2|577216

>mRNA_399-protein ID=mRNA_399-protein|Name=jgi.p|Nanoce1779_2|577216|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSSTFRTNRRLVFLFGLLILLVCFVSMGAGKVANAKGKALVEENEEDEYD
EEREMMEEFDEDEEDEDEDIDEWDEEDMDEEGEDRKLTIDDLDGMIDKED
LMRQLDAMGLTLDDVEISFDEEEEGMDRDLEDEDELDEEDEEDFDEEEFD
EEDEEDRDLEE
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mRNA from alignment at scaffold_3:988507..990033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_399 ID=mRNA_399|Name=jgi.p|Nanoce1779_2|577216|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at scaffold_3:988507..990033+ (Nannochloropsis oceanica)
TTTGAAACGGTCGTCGTGTGCCGCCGTGATTCGGTTTTGCCCCCTGCGCC
CATGCACGCTTCGTGCTTCGTCGTCGTCCGCGACTCTTCCCGGGAAACCA
GGCACAGCCTACCCACTCCCATGTACAAGAGAGACAAGCCTAACAGCCAG
CAGGACGGATTCGGTTGACTTTGTGGGTGCCAGACAGTGACTTTCACCTT
TATTCGGCCCTGGAGCCTGAGCCCATTTTTGCTTGGTCGTTCATTCCTTC
TGCTCCTGTAGCACTCGTATACCACTAGCACCATCGTTGGACCCACAGCA
CAGGTGGTGCCAGCCTTTAGAGTCCTTCTTCTGCCTTTTGCCTGGGTAGG
CGGGACGACTTCCAACCACCCGTCTTGCTCGTCCCCCCCGGTAGGCCCTT
TCTGCCGAGCACAAGACATTCATGAGCAACCTCTGAGTCTTCGTGAGTTG
ACGCTTCCGCCCACCACGACACAGTCAGGCACCACAACCCCACAGCACTC
ATACGATAGAGCCGGCATGCTGGAGACCTTCCCCTATTCACCATCATGCA
GGGCCCGGGCCCGGCGGACTGCGCCCATATATATCTTATAATAGCTCCCA
GCGAACCATATCCCTCCGGTACCACGCAAAGAGCACCTCACCACGGCGGC
TTCTCAACCGAAGAAGGTCCAATGACCAACTCGCGCAAATCACTGCCATT
GCCAGAGAATACGTTTCATCGCCTTTCACCAATCTTCGCTCACCGATACC
CATCACCTTCTCTACCCCCTAGACTCTACCATCTGATCCTAACAAATCCA
CAGAGACCACCACCATCCTGTCTCCTCAACCAAAAATGTCGTCCACTTTC
CGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCTGCTCATCCTCTTGGT
GTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAAATGCTAAGGGCAAGG
CGCTTGTTGAAGAAAACGAGGAGGATGAGTACGACGAGGAAAGGGAGATG
ATGGAGGAATTCGACGAGGACGAGGAGGATGAAGACGAGGATATTGATGA
ATGGGATGAGGAGGATATGGATGAGGAAGGAGAGGACCGGAAATTGACGA
TTGACGATTTGGACGGCATGATCGACAAAGAGGATCTGATGCGCCAGCTC
GATGCGATGGGACTGACATTGGATGTACGTATGCTTGGGAAGAGGGAGGA
AAGTGGGCTGGGTGGTTGGGGAGGGGTGCGGGATGAGAGCATTAAGTGTG
CTCCTACCAGTATGCTATTGTTTTCGATGTGAGGGTAGCATCACGTCACA
CCTTATGAATCAAGCCAACCACTCATTCTTTATTCATTGCAATAAAAACT
TTTATACAGGATGTGGAGATTTCGTTTGATGAAGAGGAGGAGGGGATGGA
TCGCGACTTGGAGGACGAGGACGAGCTCGATGAGGAGGATGAGGAGGATT
TCGATGAGGAGGAGTTCGATGAGGAGGATGAGGAGGATCGCGACTTGGAG
GAGGAAGATGAATTCGATGAGGAGGAT
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Coding sequence (CDS) from alignment at scaffold_3:988507..990033+

>mRNA_399 ID=mRNA_399|Name=jgi.p|Nanoce1779_2|577216|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_3:988507..990033+ (Nannochloropsis oceanica)
ATGTCGTCCACTTTCCGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCT
GCTCATCCTCTTGGTGTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAA
ATGCTAAGGGCAAGGCGCTTGTTGAAGAAAACGAGGAGGATGAGTACGAC
GAGGAAAGGGAGATGATGGAGGAATTCGACGAGGACGAGGAGGATGAAGA
CGAGGATATTGATGAATGGGATGAGGAGGATATGGATGAGGAAGGAGAGG
ACCGGAAATTGACGATTGACGATTTGGACGGCATGATCGACAAAGAGGAT
CTGATGCGCCAGCTCGATGCGATGGGACTGACATTGGATGATGTGGAGAT
TTCGTTTGATGAAGAGGAGGAGGGGATGGATCGCGACTTGGAGGACGAGG
ACGAGCTCGATGAGGAGGATGAGGAGGATTTCGATGAGGAGGAGTTCGAT
GAGGAGGATGAGGAGGATCGCGACTTGGAGGAGATGTCGTCCACTTTCCG
CACGAATCGTCGGCTGGTTTTCCTCTTCGGGCTGCTCATCCTCTTGGTGT
GCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAAATGCTAAGGGCAAGGCG
CTTGTTGAAGAAAACGAGGAGGATGAGTACGACGAGGAAAGGGAGATGAT
GGAGGAATTCGACGAGGACGAGGAGGATGAAGACGAGGATATTGATGAAT
GGGATGAGGAGGATATGGATGAGGAAGGAGAGGACCGGAAATTGACGATT
GACGATTTGGACGGCATGATCGACAAAGAGGATCTGATGCGCCAGCTCGA
TGCGATGGGACTGACATTGGATGATGTGGAGATTTCGTTTGATGAAGAGG
AGGAGGGGATGGATCGCGACTTGGAGGACGAGGACGAGCTCGATGAGGAG
GATGAGGAGGATTTCGATGAGGAGGAGTTCGATGAGGAGGATGAGGAGGA
TCGCGACTTGGAGGAG
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Synonyms
Publications