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Properties
| Property Name | Value |
|---|
| TranscriptId | 586123 |
| Track | FilteredModels2 |
| ProteinId | 586037 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:562025..563332 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3987 ID=mRNA_3987|Name=jgi.p|Nanoce1779_2|586037|organism=Nannochloropsis oceanica|type=mRNA|length=889bp
ACAGGAGACTATGCGTGTCCTCAGCTTCTTCATCCTAATTGCTCCGGCAG
TGGCCTTCTTGGCTCCGGTGCCCTCAAAGCCCAGCAGCATGGCTCTCCAG
GCCCAGTGCAATAACGAGGCATTTAGCCGCTCGGACGTGATGGCCGCTGG
CCTGACTGCCCTGGCTGGCCTTGGTGTAGCGCTGCCGGCTCTGGCTGCAG
AGGAGGGAAGCGTGCCTGCCATGTCCCCCGTGGACCTGAGTGTGGCCCCC
AAAAGCTTCGAGCTCTCAAAAGAGTACTACAAGGATGCCACGCAGGTTGT
CAACCACATGAAGTACGCTACCTTCATGAACCGCGACACGCCCAACTACG
AGAACATTGCCAAGTCGGTCAAGACCGAGATGACAGACTTCGTTTCCTAC
TATCGTCGCTTCAACAATGTAGCGGGCAAGCCTTCCTTCTCCACTCTCTA
CACCGCCATCAACGTCATGGCTGGTCACTATGCATCGTACGGACCCAAGT
TCCCCATCCCCGAGAAACGCCGCAAGCGCCTCCAGCAGGAGTTCACGGAG
ATTGACCGTAACATCAAGCGTAACCGATAAACATTGAAGCGACGGAAGTC
ATTGAGAGAGACAAGAGAGATGGCGTCTAAGCATCACACAGGCAGGAAAA
AAACAATCAGAAAAAACAAAACAACAGTGAACCGACATCGGGAGTAAAGG
AGTGGTAAGCTAGTAGCAGCAGCAGAGTAGCCGCATTTCATTAGTCTGTC
TACCACATTGAGAAGAGGGAAAAAAAAAGGAGAAGGTATCCGATTCCATC
GCTACTGTTTTCCTCCTCCTTTCACACCCCTTCCAAACGAAACAATTACA
ATTGCCCGGAGTAAAAAAAAACTTAATTTTCAATGCTTC back to topprotein sequence of jgi.p|Nanoce1779_2|586037 >mRNA_3987-protein ID=mRNA_3987-protein|Name=jgi.p|Nanoce1779_2|586037|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MRVLSFFILIAPAVAFLAPVPSKPSSMALQAQCNNEAFSRSDVMAAGLTA
LAGLGVALPALAAEEGSVPAMSPVDLSVAPKSFELSKEYYKDATQVVNHM
KYATFMNRDTPNYENIAKSVKTEMTDFVSYYRRFNNVAGKPSFSTLYTAI
NVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR* back to topmRNA from alignment at scaffold_8:562025..563332- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3987 ID=mRNA_3987|Name=jgi.p|Nanoce1779_2|586037|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_8:562025..563332- (Nannochloropsis oceanica)
ACAGGAGACTATGCGTGTCCTCAGCTTCTTCATCCTAATTGCTCCGGCAG
TGGCCTTCTTGGCTCCGGTGCCCTCAAAGCCCAGCAGCATGGCTCTCCAG
GCCCAGTGCAATAACGAGGTAAGAAGGGAGGGAGGCACAGCGCGAGGTGC
TGTAGCTCGATGTGGGTCCAAAAGGAAGAGAATGTCGGTCGAACCCCGCT
TCTTGTCCCAACCCACACATGCCTCCACTGTAAATACGTCGATGTGCAGG
CATTTAGCCGCTCGGACGTGATGGCCGCTGGCCTGACTGCCCTGGCTGGC
CTTGGTGTAGCGCTGCCGGCTCTGGCTGCAGAGGAGGGAAGCGTGCCTGC
CATGTCCCCCGTGGACCTGAGTGTGGCCCCCAAAAGCTTCGAGCTCTCAA
AAGAGTACTACAAGGATGCCACGCAGGTTGTCAACCACATGAAGTAAGTT
GATGGTGAAGTAGAGAATAGAGAAAGTTGGGATGACTGTGAAAGCTATTG
GCCCTTCGTCATCATACCTGCTTCCTATAATGTGTTGATTTGACATTCGC
TCCGTTCTCCTTTGAGACGTCTGACCTCGTGAAGGACTTTGCCACGTATA
TAAATGCGATCCGCGAGCAATAGGGCACACTTAAACGTTCAAAAGCCGTC
GCTTTAGCTCGCGCTCACCCCTCAAACCGTTTCCACCCTCCCCTCGCCTC
CCACGACATCCTCTCACCTTTCCACCACTAGGTACGCTACCTTCATGAAC
CGCGACACGCCCAACTACGAGAACATTGCCAAGTCGGTCAAGACCGAGAT
GACAGACTTCGTTTCCTACTATCGTCGCTTCAACAATGTAGCGGGCAAGC
CTTCCTTCTCCACTCTCTACACCGCCATCAACGTCATGGCTGGTCACTAT
GCATCGTACGGACCCAAGTTCCCCATCCCCGAGAAACGCCGCAAGCGCCT
CCAGCAGGAGTTCACGGAGATTGACCGTAACATCAAGCGTAACCGATAAA
CATTGAAGCGACGGAAGTCATTGAGAGAGACAAGAGAGATGGCGTCTAAG
CATCACACAGGCAGGAAAAAAACAATCAGAAAAAACAAAACAACAGTGAA
CCGACATCGGGAGTAAAGGAGTGGTAAGCTAGTAGCAGCAGCAGAGTAGC
CGCATTTCATTAGTCTGTCTACCACATTGAGAAGAGGGAAAAAAAAAGGA
GAAGGTATCCGATTCCATCGCTACTGTTTTCCTCCTCCTTTCACACCCCT
TCCAAACGAAACAATTACAATTGCCCGGAGTAAAAAAAAACTTAATTTTC
AATGCTTC back to topCoding sequence (CDS) from alignment at scaffold_8:562025..563332- >mRNA_3987 ID=mRNA_3987|Name=jgi.p|Nanoce1779_2|586037|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_8:562025..563332- (Nannochloropsis oceanica)
GTACGCTACCTTCATGAACCGCGACACGCCCAACTACGAGAACATTGCCA
AGTCGGTCAAGACCGAGATGACAGACTTCGTTTCCTACTATCGTCGCTTC
AACAATGTAGCGGGCAAGCCTTCCTTCTCCACTCTCTACACCGCCATCAA
CGTCATGGCTGGTCACTATGCATCGTACGGACCCAAGTTCCCCATCCCCG
AGAAACGCCGCAAGCGCCTCCAGCAGGAGTTCACGGAGATTGACCGTAAC
ATCAAGCGTAACCGATAAGCATTTAGCCGCTCGGACGTGATGGCCGCTGG
CCTGACTGCCCTGGCTGGCCTTGGTGTAGCGCTGCCGGCTCTGGCTGCAG
AGGAGGGAAGCGTGCCTGCCATGTCCCCCGTGGACCTGAGTGTGGCCCCC
AAAAGCTTCGAGCTCTCAAAAGAGTACTACAAGGATGCCACGCAGGTTGT
CAACCACATGAAATGCGTGTCCTCAGCTTCTTCATCCTAATTGCTCCGGC
AGTGGCCTTCTTGGCTCCGGTGCCCTCAAAGCCCAGCAGCATGGCTCTCC
AGGCCCAGTGCAATAACGAGGTACGCTACCTTCATGAACCGCGACACGCC
CAACTACGAGAACATTGCCAAGTCGGTCAAGACCGAGATGACAGACTTCG
TTTCCTACTATCGTCGCTTCAACAATGTAGCGGGCAAGCCTTCCTTCTCC
ACTCTCTACACCGCCATCAACGTCATGGCTGGTCACTATGCATCGTACGG
ACCCAAGTTCCCCATCCCCGAGAAACGCCGCAAGCGCCTCCAGCAGGAGT
TCACGGAGATTGACCGTAACATCAAGCGTAACCGATAAGCATTTAGCCGC
TCGGACGTGATGGCCGCTGGCCTGACTGCCCTGGCTGGCCTTGGTGTAGC
GCTGCCGGCTCTGGCTGCAGAGGAGGGAAGCGTGCCTGCCATGTCCCCCG
TGGACCTGAGTGTGGCCCCCAAAAGCTTCGAGCTCTCAAAAGAGTACTAC
AAGGATGCCACGCAGGTTGTCAACCACATGAAATGCGTGTCCTCAGCTTC
TTCATCCTAATTGCTCCGGCAGTGGCCTTCTTGGCTCCGGTGCCCTCAAA
GCCCAGCAGCATGGCTCTCCAGGCCCAGTGCAATAACGAGGTACGCTACC
TTCATGAACCGCGACACGCCCAACTACGAGAACATTGCCAAGTCGGTCAA
GACCGAGATGACAGACTTCGTTTCCTACTATCGTCGCTTCAACAATGTAG
CGGGCAAGCCTTCCTTCTCCACTCTCTACACCGCCATCAACGTCATGGCT
GGTCACTATGCATCGTACGGACCCAAGTTCCCCATCCCCGAGAAACGCCG
CAAGCGCCTCCAGCAGGAGTTCACGGAGATTGACCGTAACATCAAGCGTA
ACCGATAAGCATTTAGCCGCTCGGACGTGATGGCCGCTGGCCTGACTGCC
CTGGCTGGCCTTGGTGTAGCGCTGCCGGCTCTGGCTGCAGAGGAGGGAAG
CGTGCCTGCCATGTCCCCCGTGGACCTGAGTGTGGCCCCCAAAAGCTTCG
AGCTCTCAAAAGAGTACTACAAGGATGCCACGCAGGTTGTCAACCACATG
AAATGCGTGTCCTCAGCTTCTTCATCCTAATTGCTCCGGCAGTGGCCTTC
TTGGCTCCGGTGCCCTCAAAGCCCAGCAGCATGGCTCTCCAGGCCCAGTG
CAATAACGAG back to top
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