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Properties
| Property Name | Value |
|---|
| TranscriptId | 540753 |
| Track | FilteredModels2 |
| ProteinId | 540667 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:559860..562024 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3986 ID=mRNA_3986|Name=jgi.p|Nanoce1779_2|540667|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp
TCTTATTGGCAAATTATCAAAATGGGTTACGCCGAGCTGGTAGGGGCTAT
AATCAGGCCCCCTCGAGCCGAGTATTCGACGGCACACTTGGGGCCTCAGA
CGTTTGATTTTTGTGGGCGGGCCTTTCAACGTCGGGATTTTGAAGTGGTA
AATGGACGGGGCCAGCGGTTGCAATGCTCACATTGGGAGCCGCAACAAAT
AAACCCAACGGAGCGGCGAAGAGGGCCATTGCCTTGTATTGTGTACATGC
ACGGCAATAGCTCTGCCCGTATGGAAGCGTTGCCGCAGCTGTCATTGTGC
CTTTCACTAGGTATCACGATGGTGGCGCTGGACTTTGCGGGGTCTGGGCA
CTCTGAAGGCGACTTCGTCAGCCTTGGCTACTTCGAGAAGGACGACTTAA
AATATGTAATTGAGTACCTTAGGGCATCGGGGCGTGTCTCACGGATTGCG
TTGTGGGGTCGGTCGATGGGGGCGGTGACGGCTTTGATGCATGGAGAGCG
GGACCCGTCTTTGGCTGCCATGATTCTCGACTCACCCTTCGCAGACTTTA
CGTTATTAGCCGATGAAATGGTGGACAAGAGCAGAGAACATGGGGTGCAT
ATCCCCCGGCTTGTGGGCCACCTGGCCTTGCGCTTTATCAAAACATCAGT
GCAAAGCAAAGCGGGATTTGACATTCGGCATCTTCGTCCTCTTGAACAAG
CACCGAGGTGTTTTATGCCCGCCTTATTTATCGCCGGTAGGGATGATGAT
TTTATTGATCCGTCGCATGCACGAAAATTGGCAGAGGTGTATGGGGGAGA
TAAGAATATGGTGGTGGTGGAGGGAGATCACAACTCGATGCGGCCAAGGT
TTTTGTTTGATTCTGCCTCAATTTTTTTGCAGCAGACTTTGCAGTTGAAT
GAGGAATTTGTGTTGCCAGGGGCGAGTAAGTGGTTGGGATTTCCGCCTTG
GGCTCATTTGGTGATGCATGGGGATGAGGTTTATTATGAGGAGGAAGACG
AGGAGGAAGAGGGAGGGGGTGATGGAGGGTTTCGGTATTGGGAGGATCGG
TTTGTGTTTGATGAGTTAGGGCATCTGCCGGGGGGGGCGATCACGCTCAG
GGGGCGGGGAGGCCTGATGAGAGAGGAGGGCATGATAATATCGGGGGGGG
AACCGTCGGGCGTGCAACACAACTATCAGCACAGCCACGAGCAGCAACCA
CCGCAGTTGGAGATGGGCATGACGCAGGGGAGGCAGCGGGAAATCCAGAA
TGCCGTCACTAATCTCTTAGGTGGCGCTAGAGCCACCACTACCACCACAA
CCACCACCAGTAATGCCAGCGACAGCAGCAGCAGGGGTAACGCGAATGTT
GCTTCCGATAGCATTAGCAGTAGTATGGGCAGAGGGGGGAGTAGGTCTCG
TTTACCACCAACAGGAGGAGAGGGATGGTCTTGTGCGTTGTGCACCCTCA
TGAATGACGGCATATACTGGCAATGTGATGCTTGTGGTGCGGCACGGCCG
GGGAGGGGAGGCAGCATCAATAGTGGCAGCAGCAGTGGCGACAGAAGCGG
TAGAACAAGAGAGGAGATGGAACGGGGAATGGAGAGGGAGAGGGAAAGGA
GGAGTCCTCCACGGGCAGCATTATCAGGATTACCACCACGAGAGTACGCT
GAGGCGAGAAGGGAGGAAGATAGCAAGGCAGAATCACCGCTAGATGACGC
AAAAGCTGGACGTGGCCATGAAGATGGGTTGTAAAAGAAAGAAAGACATA
CCACACACTAGGAGGAAAAGAGGATATGGAAATGTGGTGTGTGCTTTTGC
TGACAATTTTTTCGTGATGTAACGATGCATAAAATGTGTTTTATAAACGA
AAGTCAATTACAGCATT back to topprotein sequence of jgi.p|Nanoce1779_2|540667 >mRNA_3986-protein ID=mRNA_3986-protein|Name=jgi.p|Nanoce1779_2|540667|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MGYAELVGAIIRPPRAEYSTAHLGPQTFDFCGRAFQRRDFEVVNGRGQRL
QCSHWEPQQINPTERRRGPLPCIVYMHGNSSARMEALPQLSLCLSLGITM
VALDFAGSGHSEGDFVSLGYFEKDDLKYVIEYLRASGRVSRIALWGRSMG
AVTALMHGERDPSLAAMILDSPFADFTLLADEMVDKSREHGVHIPRLVGH
LALRFIKTSVQSKAGFDIRHLRPLEQAPRCFMPALFIAGRDDDFIDPSHA
RKLAEVYGGDKNMVVVEGDHNSMRPRFLFDSASIFLQQTLQLNEEFVLPG
ASKWLGFPPWAHLVMHGDEVYYEEEDEEEEGGGDGGFRYWEDRFVFDELG
HLPGGAITLRGRGGLMREEGMIISGGEPSGVQHNYQHSHEQQPPQLEMGM
TQGRQREIQNAVTNLLGGARATTTTTTTTSNASDSSSRGNANVASDSISS
SMGRGGSRSRLPPTGGEGWSCALCTLMNDGIYWQCDACGAARPGRGGSIN
SGSSSGDRSGRTREEMERGMERERERRSPPRAALSGLPPREYAEARREED
SKAESPLDDAKAGRGHEDGL* back to topmRNA from alignment at scaffold_8:559860..562024+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3986 ID=mRNA_3986|Name=jgi.p|Nanoce1779_2|540667|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp|location=Sequence derived from alignment at scaffold_8:559860..562024+ (Nannochloropsis oceanica)
TCTTATTGGCAAATTATCAAAATGGGTTACGCCGAGCTGGTAGGGGCTAT
AATCAGGCCCCCTCGAGCCGAGTATTCGACGGCACACTTGGGGCCTCAGA
CGTTTGATTTTTGTGGGCGGGCCTTTCAACGTCGGGATTTTGAAGTGGTA
AATGGACGGGGCCAGCGGTTGCAATGCTCACATTGGGAGCCGGTGGAATA
TCCCCCTTTGGCAGAGGAAGACGAGGATGACGAAAAGGAAGACGACAGAA
GGGAAGGGGAAGGCCAAGCGCAGCAGCAGCAGCAACAGCACCAGCAACAA
ATAAACCCAACGGAGCGGCGAAGAGGGCCATTGCCTTGTATTGTGTACAT
GCACGGCAATAGCTCTGCCCGTATGGAAGCGTTGCCGCAGCTGTCATTGT
GCCTTTCACTAGGTATCACGATGGTGGCGCTGGACTTTGCGGGGTCTGGG
CACTCTGAAGGCGACTTCGTCAGCCTTGGCTACTTCGAGAAGGACGACTT
AAAATATGTAATTGAGTACCTTAGGGCATCGGGGCGTGTCTCACGGATTG
CGTTGTGGGGTCGGTCGATGGGGGCGGTGACGGCTTTGATGCATGGAGAG
CGGGACCCGTCTTTGGCTGCCATGGTACGTACGTTCCTACGTTGGTGCTT
TTTGCTTGTGGTTGTGTATTGCTTCTTGTGTGTTTCCTGCATTTTGTGTG
CTTATGTCTTTTTCAGCTCCGTCGAAGTGCCCCGTTGTTCTTATCCTCCT
GTCGCCACCTCAATTTTCCTTTGCTGACAGCTGCTCCTTCTTTTCTTCCT
TGCCCCCCACCTCTCCTTAGATTCTCGACTCACCCTTCGCAGACTTTACG
TTATTAGCCGATGAAATGGTGGACAAGAGCAGAGAACATGGGGTGCATAT
CCCCCGGCTTGTGGGCCACCTGGCCTTGCGCTTTATCAAAACATCAGTGC
AAAGCAAAGCGGGATTTGACATTCGGCATCTTCGTCCTCTTGAACAAGCA
CCGAGGTGTTTTATGCCCGCCTTATTTATCGCCGGTAGGGATGATGATTT
TATTGATCCGTCGCATGCACGAAAATTGGCAGAGGTGTATGGGGGAGATA
AGAATATGGTGGTGGTGGAGGGAGATCACAACTCGATGCGGCCAAGGTTT
TTGTTTGATTCTGCCTCAATTTTTTTGCAGCAGACTTTGCAGTTGAATGA
GGAATTTGTGTTGCCAGGGGCGAGTAAGTGGTTGGGATTTCCGCCTTGGG
CTCATTTGGTGATGCATGGGGATGAGGTTTATTATGAGGAGGAAGACGAG
GAGGAAGAGGGAGGGGGTGATGGAGGGTTTCGGTATTGGGAGGATCGGTT
TGTGTTTGATGAGTTAGGGCATCTGCCGGGGGGGGCGATCACGCTCAGGG
GGCGGGGAGGCCTGATGAGAGAGGAGGGCATGATAATATCGGGGGGGGAA
CCGTCGGGCGTGCAACACAACTATCAGCACAGCCACGAGCAGCAACCACC
GCAGTTGGAGATGGGCATGACGCAGGGGAGGCAGCGGGAAATCCAGAATG
CCGTCACTAATCTCTTAGGTGGCGCTAGAGCCACCACTACCACCACAACC
ACCACCAGTAATGCCAGCGACAGCAGCAGCAGGGGTAACGCGAATGTTGC
TTCCGATAGCATTAGCAGTAGTATGGGCAGAGGGGGGAGTAGGTCTCGTT
TACCACCAACAGGAGGAGAGGGATGGTCTTGTGCGTTGTGCACCCTCATG
AATGACGGCATATACTGGCAATGTGATGCTTGTGGTGCGGCACGGCCGGG
GAGGGGAGGCAGCATCAATAGTGGCAGCAGCAGTGGCGACAGAAGCGGTA
GAACAAGAGAGGAGATGGAACGGGGAATGGAGAGGGAGAGGGAAAGGAGG
AGTCCTCCACGGGCAGCATTATCAGGATTACCACCACGAGAGTACGCTGA
GGCGAGAAGGGAGGAAGATAGCAAGGCAGAATCACCGCTAGATGACGCAA
AAGCTGGACGTGGCCATGAAGATGGGTTGTAAAAGAAAGAAAGACATACC
ACACACTAGGAGGAAAAGAGGATATGGAAATGTGGTGTGTGCTTTTGCTG
ACAATTTTTTCGTGATGTAACGATGCATAAAATGTGTTTTATAAACGAAA
GTCAATTACAGCATT back to topCoding sequence (CDS) from alignment at scaffold_8:559860..562024+ >mRNA_3986 ID=mRNA_3986|Name=jgi.p|Nanoce1779_2|540667|organism=Nannochloropsis oceanica|type=CDS|length=5139bp|location=Sequence derived from alignment at scaffold_8:559860..562024+ (Nannochloropsis oceanica)
ATGGGTTACGCCGAGCTGGTAGGGGCTATAATCAGGCCCCCTCGAGCCGA
GTATTCGACGGCACACTTGGGGCCTCAGACGTTTGATTTTTGTGGGCGGG
CCTTTCAACGTCGGGATTTTGAAGTGGTAAATGGACGGGGCCAGCGGTTG
CAATGCTCACATTGGGAGCCGCAACAAATAAACCCAACGGAGCGGCGAAG
AGGGCCATTGCCTTGTATTGTGTACATGCACGGCAATAGCTCTGCCCGTA
TGGAAGCGTTGCCGCAGCTGTCATTGTGCCTTTCACTAGGTATCACGATG
GTGGCGCTGGACTTTGCGGGGTCTGGGCACTCTGAAGGCGACTTCGTCAG
CCTTGGCTACTTCGAGAAGGACGACTTAAAATATGTAATTGAGTACCTTA
GGGCATCGGGGCGTGTCTCACGGATTGCGTTGTGGGGTCGGTCGATGGGG
GCGGTGACGGCTTTGATGCATGGAGAGCGGGACCCGTCTTTGGCTGCCAT
GATTCTCGACTCACCCTTCGCAGACTTTACGTTATTAGCCGATGAAATGG
TGGACAAGAGCAGAGAACATGGGGTGCATATCCCCCGGCTTGTGGGCCAC
CTGGCCTTGCGCTTTATCAAAACATCAGTGCAAAGCAAAGCGGGATTTGA
CATTCGGCATCTTCGTCCTCTTGAACAAGCACCGAGGTGTTTTATGCCCG
CCTTATTTATCGCCGGTAGGGATGATGATTTTATTGATCCGTCGCATGCA
CGAAAATTGGCAGAGGTGTATGGGGGAGATAAGAATATGGTGGTGGTGGA
GGGAGATCACAACTCGATGCGGCCAAGGTTTTTGTTTGATTCTGCCTCAA
TTTTTTTGCAGCAGACTTTGCAGTTGAATGAGGAATTTGTGTTGCCAGGG
GCGAGTAAGTGGTTGGGATTTCCGCCTTGGGCTCATTTGGTGATGCATGG
GGATGAGGTTTATTATGAGGAGGAAGACGAGGAGGAAGAGGGAGGGGGTG
ATGGAGGGTTTCGGTATTGGGAGGATCGGTTTGTGTTTGATGAGTTAGGG
CATCTGCCGGGGGGGGCGATCACGCTCAGGGGGCGGGGAGGCCTGATGAG
AGAGGAGGGCATGATAATATCGGGGGGGGAACCGTCGGGCGTGCAACACA
ACTATCAGCACAGCCACGAGCAGCAACCACCGCAGTTGGAGATGGGCATG
ACGCAGGGGAGGCAGCGGGAAATCCAGAATGCCGTCACTAATCTCTTAGG
TGGCGCTAGAGCCACCACTACCACCACAACCACCACCAGTAATGCCAGCG
ACAGCAGCAGCAGGGGTAACGCGAATGTTGCTTCCGATAGCATTAGCAGT
AGTATGGGCAGAGGGGGGAGTAGGTCTCGTTTACCACCAACAGGAGGAGA
GGGATGGTCTTGTGCGTTGTGCACCCTCATGAATGACGGCATATACTGGC
AATGTGATGCTTGTGGTGCGGCACGGCCGGGGAGGGGAGGCAGCATCAAT
AGTGGCAGCAGCAGTGGCGACAGAAGCGGTAGAACAAGAGAGGAGATGGA
ACGGGGAATGGAGAGGGAGAGGGAAAGGAGGAGTCCTCCACGGGCAGCAT
TATCAGGATTACCACCACGAGAGTACGCTGAGGCGAGAAGGGAGGAAGAT
AGCAAGGCAGAATCACCGCTAGATGACGCAAAAGCTGGACGTGGCCATGA
AGATGGGTTGTAAATGGGTTACGCCGAGCTGGTAGGGGCTATAATCAGGC
CCCCTCGAGCCGAGTATTCGACGGCACACTTGGGGCCTCAGACGTTTGAT
TTTTGTGGGCGGGCCTTTCAACGTCGGGATTTTGAAGTGGTAAATGGACG
GGGCCAGCGGTTGCAATGCTCACATTGGGAGCCGCAACAAATAAACCCAA
CGGAGCGGCGAAGAGGGCCATTGCCTTGTATTGTGTACATGCACGGCAAT
AGCTCTGCCCGTATGGAAGCGTTGCCGCAGCTGTCATTGTGCCTTTCACT
AGGTATCACGATGGTGGCGCTGGACTTTGCGGGGTCTGGGCACTCTGAAG
GCGACTTCGTCAGCCTTGGCTACTTCGAGAAGGACGACTTAAAATATGTA
ATTGAGTACCTTAGGGCATCGGGGCGTGTCTCACGGATTGCGTTGTGGGG
TCGGTCGATGGGGGCGGTGACGGCTTTGATGCATGGAGAGCGGGACCCGT
CTTTGGCTGCCATGATTCTCGACTCACCCTTCGCAGACTTTACGTTATTA
GCCGATGAAATGGTGGACAAGAGCAGAGAACATGGGGTGCATATCCCCCG
GCTTGTGGGCCACCTGGCCTTGCGCTTTATCAAAACATCAGTGCAAAGCA
AAGCGGGATTTGACATTCGGCATCTTCGTCCTCTTGAACAAGCACCGAGG
TGTTTTATGCCCGCCTTATTTATCGCCGGTAGGGATGATGATTTTATTGA
TCCGTCGCATGCACGAAAATTGGCAGAGGTGTATGGGGGAGATAAGAATA
TGGTGGTGGTGGAGGGAGATCACAACTCGATGCGGCCAAGGTTTTTGTTT
GATTCTGCCTCAATTTTTTTGCAGCAGACTTTGCAGTTGAATGAGGAATT
TGTGTTGCCAGGGGCGAGTAAGTGGTTGGGATTTCCGCCTTGGGCTCATT
TGGTGATGCATGGGGATGAGGTTTATTATGAGGAGGAAGACGAGGAGGAA
GAGGGAGGGGGTGATGGAGGGTTTCGGTATTGGGAGGATCGGTTTGTGTT
TGATGAGTTAGGGCATCTGCCGGGGGGGGCGATCACGCTCAGGGGGCGGG
GAGGCCTGATGAGAGAGGAGGGCATGATAATATCGGGGGGGGAACCGTCG
GGCGTGCAACACAACTATCAGCACAGCCACGAGCAGCAACCACCGCAGTT
GGAGATGGGCATGACGCAGGGGAGGCAGCGGGAAATCCAGAATGCCGTCA
CTAATCTCTTAGGTGGCGCTAGAGCCACCACTACCACCACAACCACCACC
AGTAATGCCAGCGACAGCAGCAGCAGGGGTAACGCGAATGTTGCTTCCGA
TAGCATTAGCAGTAGTATGGGCAGAGGGGGGAGTAGGTCTCGTTTACCAC
CAACAGGAGGAGAGGGATGGTCTTGTGCGTTGTGCACCCTCATGAATGAC
GGCATATACTGGCAATGTGATGCTTGTGGTGCGGCACGGCCGGGGAGGGG
AGGCAGCATCAATAGTGGCAGCAGCAGTGGCGACAGAAGCGGTAGAACAA
GAGAGGAGATGGAACGGGGAATGGAGAGGGAGAGGGAAAGGAGGAGTCCT
CCACGGGCAGCATTATCAGGATTACCACCACGAGAGTACGCTGAGGCGAG
AAGGGAGGAAGATAGCAAGGCAGAATCACCGCTAGATGACGCAAAAGCTG
GACGTGGCCATGAAGATGGGTTGTAAATGGGTTACGCCGAGCTGGTAGGG
GCTATAATCAGGCCCCCTCGAGCCGAGTATTCGACGGCACACTTGGGGCC
TCAGACGTTTGATTTTTGTGGGCGGGCCTTTCAACGTCGGGATTTTGAAG
TGGTAAATGGACGGGGCCAGCGGTTGCAATGCTCACATTGGGAGCCGCAA
CAAATAAACCCAACGGAGCGGCGAAGAGGGCCATTGCCTTGTATTGTGTA
CATGCACGGCAATAGCTCTGCCCGTATGGAAGCGTTGCCGCAGCTGTCAT
TGTGCCTTTCACTAGGTATCACGATGGTGGCGCTGGACTTTGCGGGGTCT
GGGCACTCTGAAGGCGACTTCGTCAGCCTTGGCTACTTCGAGAAGGACGA
CTTAAAATATGTAATTGAGTACCTTAGGGCATCGGGGCGTGTCTCACGGA
TTGCGTTGTGGGGTCGGTCGATGGGGGCGGTGACGGCTTTGATGCATGGA
GAGCGGGACCCGTCTTTGGCTGCCATGATTCTCGACTCACCCTTCGCAGA
CTTTACGTTATTAGCCGATGAAATGGTGGACAAGAGCAGAGAACATGGGG
TGCATATCCCCCGGCTTGTGGGCCACCTGGCCTTGCGCTTTATCAAAACA
TCAGTGCAAAGCAAAGCGGGATTTGACATTCGGCATCTTCGTCCTCTTGA
ACAAGCACCGAGGTGTTTTATGCCCGCCTTATTTATCGCCGGTAGGGATG
ATGATTTTATTGATCCGTCGCATGCACGAAAATTGGCAGAGGTGTATGGG
GGAGATAAGAATATGGTGGTGGTGGAGGGAGATCACAACTCGATGCGGCC
AAGGTTTTTGTTTGATTCTGCCTCAATTTTTTTGCAGCAGACTTTGCAGT
TGAATGAGGAATTTGTGTTGCCAGGGGCGAGTAAGTGGTTGGGATTTCCG
CCTTGGGCTCATTTGGTGATGCATGGGGATGAGGTTTATTATGAGGAGGA
AGACGAGGAGGAAGAGGGAGGGGGTGATGGAGGGTTTCGGTATTGGGAGG
ATCGGTTTGTGTTTGATGAGTTAGGGCATCTGCCGGGGGGGGCGATCACG
CTCAGGGGGCGGGGAGGCCTGATGAGAGAGGAGGGCATGATAATATCGGG
GGGGGAACCGTCGGGCGTGCAACACAACTATCAGCACAGCCACGAGCAGC
AACCACCGCAGTTGGAGATGGGCATGACGCAGGGGAGGCAGCGGGAAATC
CAGAATGCCGTCACTAATCTCTTAGGTGGCGCTAGAGCCACCACTACCAC
CACAACCACCACCAGTAATGCCAGCGACAGCAGCAGCAGGGGTAACGCGA
ATGTTGCTTCCGATAGCATTAGCAGTAGTATGGGCAGAGGGGGGAGTAGG
TCTCGTTTACCACCAACAGGAGGAGAGGGATGGTCTTGTGCGTTGTGCAC
CCTCATGAATGACGGCATATACTGGCAATGTGATGCTTGTGGTGCGGCAC
GGCCGGGGAGGGGAGGCAGCATCAATAGTGGCAGCAGCAGTGGCGACAGA
AGCGGTAGAACAAGAGAGGAGATGGAACGGGGAATGGAGAGGGAGAGGGA
AAGGAGGAGTCCTCCACGGGCAGCATTATCAGGATTACCACCACGAGAGT
ACGCTGAGGCGAGAAGGGAGGAAGATAGCAAGGCAGAATCACCGCTAGAT
GACGCAAAAGCTGGACGTGGCCATGAAGATGGGTTGTAA back to top
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