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Properties
| Property Name | Value |
|---|
| TranscriptId | 586104 |
| Track | FilteredModels2 |
| ProteinId | 586018 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:546561..547815 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3980 ID=mRNA_3980|Name=jgi.p|Nanoce1779_2|586018|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
ACAGAGGGGCACCCAATAACGTGAAGCATACGCAGCAGAGACCATTAAGT
GTCAATTATGTTAGGCCGGGCTTCGATCCTTGTTGCGGCGGTAGCAGTCA
TATTGATGCTTGTAGAGCAAGCGACGGCGTTTATGGGACCGCTACCACGA
GCAGGAAAGGGGATTGTTGGAGATAGCAGCGCCAACAGTCAAAGACAGCA
CATGGACAGACGGGTTGGCGAGCAGCTCCATTTCCAGTCGTCTTCAACGG
CATTGTGGGCCAAGAAGAACAAGGAGTCGGACGTGATTGAGGTGGACGGA
ATCGTCAAGGAATCTCTCCCCAATGCCAAGTTTCGAGTTGAGCTCCTGGC
TACCAAGGCCGTCATTGTCTGCTCCACATCTGGGAAAATGCGCAAAAACT
TTGTGCGTGTCCTTGTCGGCGACCCCGTCAAGGTCGAGCTCTCTCCCTAT
GATTTAACACGTGGCCGCATCACCTACCGCTCGCGAGGCCCTGGAAAGGA
TCGCCCTGGGTCTCCGCAATTCCCTACGCCTGATGCCCCCCCTCCTCCTC
CTTCCTCCTAAAAGATTATTGGTGATGAAGAGAGGGATGGCCACATGCAG
AGGGGGAAGAGAGACCAAAGCAAGACAGATGGGAAAAAATCCTCCCTCTC
CCTTGTACAGGAGCCTATATCTAAGCTAGCAAGCTTTTTCAAGGTGCAAT
ATTTCTGTCCCTTTCCTCCCCATGTCTGGTTTTTTTTTGTGGTCGTGCGT
GTTTTGCAGTTCCTTCCACATGCCTCTGAAGAAAAATCAACGAGAAGAAA
AAAGAAGAAAAACCGCCGGAGTAACAGTTGGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|586018 >mRNA_3980-protein ID=mRNA_3980-protein|Name=jgi.p|Nanoce1779_2|586018|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MLGRASILVAAVAVILMLVEQATAFMGPLPRAGKGIVGDSSANSQRQHMD
RRVGEQLHFQSSSTALWAKKNKESDVIEVDGIVKESLPNAKFRVELLATK
AVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRP
GSPQFPTPDAPPPPPSS* back to topmRNA from alignment at scaffold_8:546561..547815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3980 ID=mRNA_3980|Name=jgi.p|Nanoce1779_2|586018|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp|location=Sequence derived from alignment at scaffold_8:546561..547815- (Nannochloropsis oceanica)
ACAGAGGGGCACCCAATAACGTGAAGCATACGCAGCAGAGACCATTAAGG
TGAGTTTCAGGAGGGTTGGCTTGCATGGCATGGTTTTTGGCCTTGGAGGG
AGAGCATGACTGTGCGTAGGCTTAGCGAGTGCGTGCGTGCCGGGGTATGT
CGCTTGGCGCCGCACTCCCCGCCACATCAAAACAGCACCGGCGCTCCCAA
ATTTCGGTAGGATTATTCATTTCCCCTCCTTGCAATCGATCCTTCCATAA
AAGTGTCAATTATGTTAGGCCGGGCTTCGATCCTTGTTGCGGCGGTAGCA
GTCATATTGATGCTTGTAGAGCAAGCGACGGCGTTTATGGGACCGCTACC
ACGAGCAGGAAAGGGGATTGTTGGAGATAGCAGCGCCAACAGTCAAAGAC
AGCACATGGACAGACGGGTTGGCGAGCAGCTCCATTTCCAGGTGGGAACG
TGGTGGAAACAGGGACGCACGAAATCATTTTGTTAAATTGTCTACGCACC
CGCGCTCACACCTCGTCATTTCTTTCGTTCTCCATCCCTACCATACACAT
CAATGGCTTCAACAACAGTCGTCTTCAACGGCATTGTGGGCCAAGAAGAA
CAAGGAGTCGGACGTGATTGAGGTACGTTCCATGAATGACCAGCCGGCGA
CACATGTCCAATTCTCCTCTCCTGGATTTCTCACACTCTTCCCTTCATTC
TCCCCATCAAAGGTGGACGGAATCGTCAAGGAATCTCTCCCCAATGCCAA
GTTTCGAGTTGAGCTCCTGGCTACCAAGGCCGTCATTGTCTGCTCCACAT
CTGGGAAAATGCGCAAAAACTTTGTGCGTGTCCTTGTCGGCGACCCCGTC
AAGGTCGAGCTCTCTCCCTATGATTTAACACGTGGCCGCATCACCTACCG
CTCGCGAGGCCCTGGAAAGGATCGCCCTGGGTCTCCGCAATTCCCTACGC
CTGATGCCCCCCCTCCTCCTCCTTCCTCCTAAAAGATTATTGGTGATGAA
GAGAGGGATGGCCACATGCAGAGGGGGAAGAGAGACCAAAGCAAGACAGA
TGGGAAAAAATCCTCCCTCTCCCTTGTACAGGAGCCTATATCTAAGCTAG
CAAGCTTTTTCAAGGTGCAATATTTCTGTCCCTTTCCTCCCCATGTCTGG
TTTTTTTTTGTGGTCGTGCGTGTTTTGCAGTTCCTTCCACATGCCTCTGA
AGAAAAATCAACGAGAAGAAAAAAGAAGAAAAACCGCCGGAGTAACAGTT
GGTCC back to topCoding sequence (CDS) from alignment at scaffold_8:546561..547815- >mRNA_3980 ID=mRNA_3980|Name=jgi.p|Nanoce1779_2|586018|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_8:546561..547815- (Nannochloropsis oceanica)
GTGGACGGAATCGTCAAGGAATCTCTCCCCAATGCCAAGTTTCGAGTTGA
GCTCCTGGCTACCAAGGCCGTCATTGTCTGCTCCACATCTGGGAAAATGC
GCAAAAACTTTGTGCGTGTCCTTGTCGGCGACCCCGTCAAGGTCGAGCTC
TCTCCCTATGATTTAACACGTGGCCGCATCACCTACCGCTCGCGAGGCCC
TGGAAAGGATCGCCCTGGGTCTCCGCAATTCCCTACGCCTGATGCCCCCC
CTCCTCCTCCTTCCTCCTAATCGTCTTCAACGGCATTGTGGGCCAAGAAG
AACAAGGAGTCGGACGTGATTGAGATGTTAGGCCGGGCTTCGATCCTTGT
TGCGGCGGTAGCAGTCATATTGATGCTTGTAGAGCAAGCGACGGCGTTTA
TGGGACCGCTACCACGAGCAGGAAAGGGGATTGTTGGAGATAGCAGCGCC
AACAGTCAAAGACAGCACATGGACAGACGGGTTGGCGAGCAGCTCCATTT
CCAGGTGGACGGAATCGTCAAGGAATCTCTCCCCAATGCCAAGTTTCGAG
TTGAGCTCCTGGCTACCAAGGCCGTCATTGTCTGCTCCACATCTGGGAAA
ATGCGCAAAAACTTTGTGCGTGTCCTTGTCGGCGACCCCGTCAAGGTCGA
GCTCTCTCCCTATGATTTAACACGTGGCCGCATCACCTACCGCTCGCGAG
GCCCTGGAAAGGATCGCCCTGGGTCTCCGCAATTCCCTACGCCTGATGCC
CCCCCTCCTCCTCCTTCCTCCTAATCGTCTTCAACGGCATTGTGGGCCAA
GAAGAACAAGGAGTCGGACGTGATTGAGATGTTAGGCCGGGCTTCGATCC
TTGTTGCGGCGGTAGCAGTCATATTGATGCTTGTAGAGCAAGCGACGGCG
TTTATGGGACCGCTACCACGAGCAGGAAAGGGGATTGTTGGAGATAGCAG
CGCCAACAGTCAAAGACAGCACATGGACAGACGGGTTGGCGAGCAGCTCC
ATTTCCAGGTGGACGGAATCGTCAAGGAATCTCTCCCCAATGCCAAGTTT
CGAGTTGAGCTCCTGGCTACCAAGGCCGTCATTGTCTGCTCCACATCTGG
GAAAATGCGCAAAAACTTTGTGCGTGTCCTTGTCGGCGACCCCGTCAAGG
TCGAGCTCTCTCCCTATGATTTAACACGTGGCCGCATCACCTACCGCTCG
CGAGGCCCTGGAAAGGATCGCCCTGGGTCTCCGCAATTCCCTACGCCTGA
TGCCCCCCCTCCTCCTCCTTCCTCCTAATCGTCTTCAACGGCATTGTGGG
CCAAGAAGAACAAGGAGTCGGACGTGATTGAGATGTTAGGCCGGGCTTCG
ATCCTTGTTGCGGCGGTAGCAGTCATATTGATGCTTGTAGAGCAAGCGAC
GGCGTTTATGGGACCGCTACCACGAGCAGGAAAGGGGATTGTTGGAGATA
GCAGCGCCAACAGTCAAAGACAGCACATGGACAGACGGGTTGGCGAGCAG
CTCCATTTCCAG back to top
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