jgi.p|Nanoce1779_2|577214, mRNA_398 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577214
Unique Name	mRNA_398
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1681
Alignment location	scaffold_3:986301..988327 +

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Properties


Property Name	Value
TranscriptId	577300
Track	FilteredModels2
ProteinId	577214

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:986301..988327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577214	gene_398	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577214	mRNA_398-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_398	CDS_398	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:986301..988327+
coding sequence from alignment at scaffold_3:986301..988327+

mRNA sequence

>mRNA_398 ID=mRNA_398|Name=jgi.p|Nanoce1779_2|577214|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
CTCCTCCTCCTCCTCCTCCTTTTCTTCCTCCTCCTGACCCAGCTGTCCTT
CTGCTCCCGCTCCGAGCCAGCTCAACCATACCCGCGTATTTACGATTTAA
AACCCGTAGCTCGTCTTCCAACACATACTCCAGTTCCTTTAACTCGGCTT
GCATCGCCAGAATCACCTCCTTGTCATGCTCTTCCGCGTCGTGCTGCTGC
TGCTGCTGCTGCAGTCGTTGCTTCCCCTCCATACATTCCGCAGCAACTGT
TGGACGGCGTCCCCTCGCAAGAGACGCATGCCCACCACATGCCCGAGTGG
TGGAGGGAAAGGAGGTCGAAGCAGACCCGGCAGATTGCCCCGAGGGAGGG
AAGGCGCAGCGCTCCTCCCGCCCCATGACCGAGCCCGTTTCCAACTGCAC
CAACTCATACAAAGCATCCAACACCCGCTTAGGCTCCCGTTGCTTGCATT
CTCGCACAGCCTGCGAGAGTGTGGCCAAGAGATTATATGTCCGATGGTGC
GACGCCGGCAAGAAGGGCAAGGTCCCCCCGCTGTTGCTGCTGCTCGTCCG
AATGGACCGGGGTTTGGGAGCCGTGCGCGGGGCAGCTGCATAGTCGCAGC
AACTGCTGCTGGTGGTGGCGGTGGCTGTACCCTGCGACTTGGTTCCATGT
GCCGGATAATACCTAGCAATTTCCTGGTTCATGTCCAACACCGACAGTAA
GACCTCCCCAAATTTCTCATTGCGTTCCTCCAGCTCAAGTCGACGAGCCG
TTTCTATCTCCAATGTTTCACGCAACTCAGCGATCGTATTCTCGGCTTTA
ACGCCTCGATTCTGGACGGCGTGCTCCATTTTGCTTATCCGGGCCCCCAT
CCCGCGTACCCTTACTTTAGCTAATCGGCGGCTTTCCTCCTCCGCAAGCA
ACTGCCCACGCAGTCGACCTGCTTCCTGGACGAGCACAGCACGTCTCTCC
TCCGAGCGCACTAGCTTGCTCTCCATTGCCTCCTTGTCCGACAACAGCCG
CTCATAAGCACCCTGTACGTGAGAATATTGCTCTTGTAGCTCCAACACGT
CTTCCCGCCGTTCAACTTCCGCCCGACGCTGCACCCCCTCGAGCTGCTGA
CGTAGCATGCCGACCTCCCAAATGGCATCGGCCCGCTCTTTCTCCAGGCG
CTTAATCTTATCTTGCAGCGCACGTAGGGCACTTAGGACAGCGGTACTAC
TCTTACTCACGGTCGGGGTTTGATGGGGAGGGTGAGAGGAAGGAGGGTAT
GCTGGCGGCAAGATGGAGAACGCCGATGGTGGCTGAGAGGGGGCAGTGAA
TCTGGTAGTGCCGCTGCTGGTGGTGCCTACCAGATCAGTGGTGGTACTGG
CGGTATTGGCGTGAGCACGACAGCTGTCCGTGTCCTCCTGTTGCTGCTGT
TGACGGTGGTGCGACGACGGGGAGGGTTGACCGGCGAAGATATCCACGCT
GCCGGTGCGGCGCAAGTGCACGTGCGTCTCAAGGGCACCATCTTTGTCAG
CAAGCAATCCTCGGTCCATCCGTGAGAAATGCATATGGTTATCACGCGTT
GCAGGTGTGTGGGCGCTGCGAGACGTGCGATTGGAGTCCTCCATGGGTTG
TGCAAGGGCCCGTCTAAATTTGGTGCTGTGCGGCGAATCCTACTTCCAGT
GGAAGTGTCGTGACACCTGCCTGGTGTGGCT

protein sequence of jgi.p|Nanoce1779_2|577214

>mRNA_398-protein ID=mRNA_398-protein|Name=jgi.p|Nanoce1779_2|577214|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MLFRVVLLLLLLQSLLPLHTFRSNCWTASPRKRRMPTTCPSGGGKGGRSR
PGRLPRGREGAALLPPHDRARFQLHQLIQSIQHPLRLPLLAFSHSLRECG
QEIICPMVRRRQEGQGPPAVAAARPNGPGFGSRARGSCIVAATAAGGGGG
CTLRLGSMCRIIPSNFLVHVQHRQ*

mRNA from alignment at scaffold_3:986301..988327+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_398 ID=mRNA_398|Name=jgi.p|Nanoce1779_2|577214|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp|location=Sequence derived from alignment at scaffold_3:986301..988327+ (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTTTTCTTCCTCCTCCTGACCCAGCTGTCCTT
CTGCTCCCGCTCCGAGCCAGCTCAACCATACCCGCGTATTTACGATTTAA
AACCCGTAGCTCGTCTTCCAACACATACTCCAGTTCCTTTAACTCGGCTT
GCATCGCCAGAATCACCTCCTTGTCATGCTCTTCCGCGTCGTGCTGCTGC
TGCTGCTGCTGCAGTCGTTGCTTCCCCTCCATACATTCCGCAGCAACTGT
TGGACGGCGTCCCCTCGCAAGAGACGCATGCCCACCACATGCCCGAGTGG
TGGAGGGAAAGGAGGTCGAAGCAGACCCGGCAGATTGCCCCGAGGGAGGG
AAGGCGCAGCGCTCCTCCCGCCCCATGACCGAGCCCGTTTCCAACTGCAC
CAACTCATACAAAGCATCCAACACCCGCTTAGGCTCCCGTTGCTTGCATT
CTCGCACAGCCTGCGAGAGTGTGGCCAAGAGATTATATGTCCGATGGTGC
GACGCCGGCAAGAAGGGCAAGGTCCCCCCGCTGTTGCTGCTGCTCGTCCG
AATGGACCGGGGTTTGGGAGCCGTGCGCGGGGCAGCTGCATAGTCGCAGC
AACTGCTGCTGGTGGTGGCGGTGGCTGTACCCTGCGACTTGGTTCCATGT
GCCGGATAATACCTAGCAATTTCCTGGTTCATGTCCAACACCGACAGTAA
GACCTCCCCAAATTTCTCATTGCGTTCCTCCAGCTCAAGTCGACGAGCCG
TTTCTATCTCCAATGTTTCACGCAACTCAGCGATCGTATTCTCGGCTTTA
ACGCCTCGATTCTGGACGGCGTGCTCCATTTTGCTTATCCGGGCCCCCAT
CCCGCGTACCCTTACTTTAGCTAATCGGCGGCTTTCCTCCTCCGCAAGCA
ACTGCCCACGCAGTCGACCTGCTTCCTGGACGAGCACAGCACGTCTCTCC
TCCGAGCGCACTAGCTTGCTCTCCATTGCCTCCTTGTCCGACAACAGCCG
CTCATAAGCACCCTGTACGTGAGAATATTGCTCTTGTAGCTCCAACACGT
CTTCCCGCCGTTCAACTTCCGCCCGACGCTGCACCCCCTCGAGCTGCTGA
CGTAGCATGCCGACCTCCCAAATGGCATCGGCCCGCTCTTTCTCCAGGCG
CTTAATCTTATCTTGCAGCGCACGTAGGGCACTTAGGACAGCGGTACTAC
TCTTACTCACGGTCGGGGTTTGATGGGGAGGGTGAGAGGAAGGAGGGTAT
GCTGGCGGCAAGATGGAGAACGCCGATGGTGGCTGAGAGGGGGCAGTGAA
TCTGGTAGTGCCGCTGCTGGTGGTGCCTACCAGATCAGTGGTGGTACTGG
CGGTATTGGCGTGAGCACGACAGCTGTCCGTGTCCTCCTGTTGCTGCTGT
TGACGGTGGTGCGACGACGGGGAGGGTTGACCGGCGAAGATATCCACGCT
GCCGGTGCGGCGCAAGTGCACGTGCGTCTCAAGGGCACCATCTGTTGTGT
AAGAAGGCAGTGTGGAAAAAGGAAGAGAGAAGGAAAGTTTTCTTCGATCG
AGAGATGTCTGCGTTGCCCGCAACTTTCTTTTTTCATTCAAAGGGGATGA
GGAGTTGCATCTTGGCCTGGTGACCAAGAGAAAAAGGTGCTCTTGCACAA
TGAACGAAGAAGACGAACACTAAAACACGTGAAGGCAGGCTAACACTACT
ATTTGCTTCCCGTATGCTTTGAGTAGATCACCACTTTTTACGTGCTCTCT
AGATGCATGGCGATTCCTCCGCGTGCAATGGTGACAGAAACTTGGAACAA
AAGGAAGACAGGGGAGGGAAGAGAGGTCGCAACACACCTTTGTCAGCAAG
CAATCCTCGGTCCATCCGTGAGAAATGCATATGGTTATCACGCGTTGCAG
GTGTGTGGGCGCTGCGAGACGTGCGATTGGAGTCCTCCATGGGTTGTGCA
AGGGCCCGTCTAAATTTGGTGCTGTGCGGCGAATCCTACTTCCAGTGGAA
GTGTCGTGACACCTGCCTGGTGTGGCT

Coding sequence (CDS) from alignment at scaffold_3:986301..988327+

>mRNA_398 ID=mRNA_398|Name=jgi.p|Nanoce1779_2|577214|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_3:986301..988327+ (Nannochloropsis oceanica)
ATGCTCTTCCGCGTCGTGCTGCTGCTGCTGCTGCTGCAGTCGTTGCTTCC
CCTCCATACATTCCGCAGCAACTGTTGGACGGCGTCCCCTCGCAAGAGAC
GCATGCCCACCACATGCCCGAGTGGTGGAGGGAAAGGAGGTCGAAGCAGA
CCCGGCAGATTGCCCCGAGGGAGGGAAGGCGCAGCGCTCCTCCCGCCCCA
TGACCGAGCCCGTTTCCAACTGCACCAACTCATACAAAGCATCCAACACC
CGCTTAGGCTCCCGTTGCTTGCATTCTCGCACAGCCTGCGAGAGTGTGGC
CAAGAGATTATATGTCCGATGGTGCGACGCCGGCAAGAAGGGCAAGGTCC
CCCCGCTGTTGCTGCTGCTCGTCCGAATGGACCGGGGTTTGGGAGCCGTG
CGCGGGGCAGCTGCATAGTCGCAGCAACTGCTGCTGGTGGTGGCGGTGGC
TGTACCCTGCGACTTGGTTCCATGTGCCGGATAATACCTAGCAATTTCCT
GGTTCATGTCCAACACCGACAGTAA

Synonyms

Publications