jgi.p|Nanoce1779_2|527059, mRNA_3979 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527059
Unique NamemRNA_3979
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1161
Alignment locationscaffold_8:544399..545811 -

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Properties
Property NameValue
TranscriptId527145
TrackFilteredModels2
ProteinId527059
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:544399..545811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527059gene_3979Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527059mRNA_3979-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3979CDS_3979Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3979 ID=mRNA_3979|Name=jgi.p|Nanoce1779_2|527059|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
ATGGCCACTAGGGGCGTGGCAAGCAGTAGTATAGCTGGCACCAAGGAACT
GAATGCCAAGGAACGGCGGCTGCTTCGACGGGCACAAGAGAGGATGGCAG
CCGAGTCTGGCCCCCTTGCGCCCCCGACTCCCACCACCATCACCAAGACC
AAAGTCACTTCTGTTTCTATAACTAAGGGTAAGAATACCACTACTACCCC
TTCCCTCATCGAATCTGTCGCCAAAAAGGTGTCAAGTAAGGATATCATGC
CGTTTACCATGCCTCCTGGAGGTCTAGAGAGCCTGAATGCCAAGCAGCGG
CGTCTCTACAAGCGCGCGCAAGGGCGGGCAGCGCAAGAAGCAGGCCCAGT
CGCAACCCAAATTAATGCAGACACCAGCACTCGCGTAAAGAGAAAACGAT
CCGTGGAAACCCCGCACATTGTCTTCGTGGGACAGCTTGGATTTAAGACA
ACTGCCGAGGCATTGCAGGAGCACTTGGAGAAGGGTGGAGTGGCAGGCAT
CGTGCATGTGCGGTTGCTCACCGAGAAGGGCACTGGTAAGTCACGTGGTC
AGGCATTCGTTACGCTGATCGATGCCGAGAATCAGTATAAATGCCTGTCA
TTGCACCACACCAAGTTGGATGGGCGGGTGATTAACGTGGAGCGGTCGTG
TGGAGGCAAGAACGTGGATAAGCGCAAGGAGAAGATCACGGCGCTGCGCG
GGGAGCAGAAGGTGGCATTGCGAGCGACTTGCAATCGGATTCTAAAGGAA
AAGATTGAAGCTGGTGAACTCAAGCCGGGGGAGTTGGATGAGCAAGCTGT
GGGCTTGTTGACTCGGTACGATGGGGGGATGGCGTCGGCGATTTTGGAAG
CGTATTGTGCAGAGGACAGGGATAGGTTGAGAAACCGCTCTGCTTACTTT
ATGATGCTGGCCAAGCGGGTCATCGATGAGGGAATTGAGGCAACGAGCAA
AAGCAGCAGCACCGGGAGAGACAGTGGTGCTACGGGTGTTGGTGCTAAAG
GACACGGGGATTATTACGATATAACGCGGGTATTTGGCTCTGTACGCGGT
CGTGGTGGCTTCGGAGGGGCCGGGCGTGGAGGTGGTGGAGGACGTGGGCG
GGGCTACGGCTGTGGTCGCGGCAGAGGAGGAGGAGGAATAGGACGAGGAG
GTGGGAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|527059

>mRNA_3979-protein ID=mRNA_3979-protein|Name=jgi.p|Nanoce1779_2|527059|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MATRGVASSSIAGTKELNAKERRLLRRAQERMAAESGPLAPPTPTTITKT
KVTSVSITKGKNTTTTPSLIESVAKKVSSKDIMPFTMPPGGLESLNAKQR
RLYKRAQGRAAQEAGPVATQINADTSTRVKRKRSVETPHIVFVGQLGFKT
TAEALQEHLEKGGVAGIVHVRLLTEKGTGKSRGQAFVTLIDAENQYKCLS
LHHTKLDGRVINVERSCGGKNVDKRKEKITALRGEQKVALRATCNRILKE
KIEAGELKPGELDEQAVGLLTRYDGGMASAILEAYCAEDRDRLRNRSAYF
MMLAKRVIDEGIEATSKSSSTGRDSGATGVGAKGHGDYYDITRVFGSVRG
RGGFGGAGRGGGGGRGRGYGCGRGRGGGGIGRGGGR*
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mRNA from alignment at scaffold_8:544399..545811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3979 ID=mRNA_3979|Name=jgi.p|Nanoce1779_2|527059|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at scaffold_8:544399..545811- (Nannochloropsis oceanica)
ATGGCCACTAGGGGCGTGGCAAGCAGTAGTATAGCTGGCACCAAGGAACT
GAATGCCAAGGAACGGCGGCTGCTTCGACGGGCACAAGAGAGGATGGCAG
CCGAGTCTGGCCCCCTTGCGCCCCCGACTCCCACCACCATCACCAAGACC
AAAGTCACTTCTGTTTCTATAACTAAGGGTAAGAATACCACTACTACCCC
TTCCCTCATCGAATCTGTCGCCAAAAAGGTGTCAAGTAAGGATATCATGC
CGTTTACCATGCCTCCTGGAGGTCTAGAGAGCCTGAATGCCAAGCAGCGG
CGTCTCTACAAGCGCGCGCAAGGGCGGGCAGCGCAAGAAGCAGGCCCAGT
CGCAACCCAAATTAATGCAGACACCAGCACTCGCGTAAAGAGAAAACGAT
CCGTGGAAACCCCGCACATTGTCTTCGTGGGACAGCTTGGATTTAAGACA
ACTGCCGAGGCATTGCAGGAGCACTTGGAGAAGGGTGGAGTGGCAGGCAT
CGTGCATGTGCGGTTGCTCACCGAGAAGGGCACTGGTAAGTCACGTGGTC
AGGCATTCGTTACGCTGATCGATGCCGAGAATCAGTATAAATGCCTGTCA
TTGCACCACACCAAGTTGGATGGGCGGGTGATTAACGTGGAGCGGTCGTG
TGGAGGCAAGAACGTGGATAAGCGCAAGGAGAAGATCACGGCGCTGCGCG
GGGAGCAGAAGGTGGCATTGCGAGCGACTTGCAATCGGATTCTAAAGGAA
AAGATTGAAGCTGGTGAACTCAAGCCGGGGGAGTTGGATGAGCAAGCTGT
GGGCTTGTTGACTCGGTACGATGGGGGGATGGCGTCGGCGATTTTGGAAG
CGTATTGTGCAGAGGACAGGGATAGGTTGAGAAACCGCTCTGCTTACTTT
ATGATGCTGGCCAAGCGGGTCATCGATGAGGGAATTGAGGCAGTCCTGGC
GGATACGGCCATGACCAAGGCGAGACGGGCGGCGCAGACTGCTGGTGTTC
CGTATGTGCCTGGAGAGATGAAAGAAGAGAAAGGGAAGGGGGGGGCGCCG
CCGGTCAAGAGGACGAAGGGAAAGAGTGAGCAGCCACAACAGCAGCAGGA
AGAGCCGGAGGAGGTTACGGATGAAGAAGAGGAGGAGGAAGAGCGGGGGT
GGGGGATGCCGCACCACAACGAACTAGGCGATGCTATGGACAAGACGAGC
AAAAGCAGCAGCACCGGGAGAGACAGTGGTGCTACGGGTGTTGGTGCTAA
AGGACACGGGGATTATTACGATATAACGCGGGTATTTGGCTCTGTACGCG
GTCGTGGTGGCTTCGGAGGGGCCGGGCGTGGAGGTGGTGGAGGACGTGGG
CGGGGCTACGGCTGTGGTCGCGGCAGAGGAGGAGGAGGAATAGGACGAGG
AGGTGGGAGGTAG
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Coding sequence (CDS) from alignment at scaffold_8:544399..545811-

>mRNA_3979 ID=mRNA_3979|Name=jgi.p|Nanoce1779_2|527059|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_8:544399..545811- (Nannochloropsis oceanica)
ACGAGCAAAAGCAGCAGCACCGGGAGAGACAGTGGTGCTACGGGTGTTGG
TGCTAAAGGACACGGGGATTATTACGATATAACGCGGGTATTTGGCTCTG
TACGCGGTCGTGGTGGCTTCGGAGGGGCCGGGCGTGGAGGTGGTGGAGGA
CGTGGGCGGGGCTACGGCTGTGGTCGCGGCAGAGGAGGAGGAGGAATAGG
ACGAGGAGGTGGGAGGTAGATGGCCACTAGGGGCGTGGCAAGCAGTAGTA
TAGCTGGCACCAAGGAACTGAATGCCAAGGAACGGCGGCTGCTTCGACGG
GCACAAGAGAGGATGGCAGCCGAGTCTGGCCCCCTTGCGCCCCCGACTCC
CACCACCATCACCAAGACCAAAGTCACTTCTGTTTCTATAACTAAGGGTA
AGAATACCACTACTACCCCTTCCCTCATCGAATCTGTCGCCAAAAAGGTG
TCAAGTAAGGATATCATGCCGTTTACCATGCCTCCTGGAGGTCTAGAGAG
CCTGAATGCCAAGCAGCGGCGTCTCTACAAGCGCGCGCAAGGGCGGGCAG
CGCAAGAAGCAGGCCCAGTCGCAACCCAAATTAATGCAGACACCAGCACT
CGCGTAAAGAGAAAACGATCCGTGGAAACCCCGCACATTGTCTTCGTGGG
ACAGCTTGGATTTAAGACAACTGCCGAGGCATTGCAGGAGCACTTGGAGA
AGGGTGGAGTGGCAGGCATCGTGCATGTGCGGTTGCTCACCGAGAAGGGC
ACTGGTAAGTCACGTGGTCAGGCATTCGTTACGCTGATCGATGCCGAGAA
TCAGTATAAATGCCTGTCATTGCACCACACCAAGTTGGATGGGCGGGTGA
TTAACGTGGAGCGGTCGTGTGGAGGCAAGAACGTGGATAAGCGCAAGGAG
AAGATCACGGCGCTGCGCGGGGAGCAGAAGGTGGCATTGCGAGCGACTTG
CAATCGGATTCTAAAGGAAAAGATTGAAGCTGGTGAACTCAAGCCGGGGG
AGTTGGATGAGCAAGCTGTGGGCTTGTTGACTCGGTACGATGGGGGGATG
GCGTCGGCGATTTTGGAAGCGTATTGTGCAGAGGACAGGGATAGGTTGAG
AAACCGCTCTGCTTACTTTATGATGCTGGCCAAGCGGGTCATCGATGAGG
GAATTGAGGCAACGAGCAAAAGCAGCAGCACCGGGAGAGACAGTGGTGCT
ACGGGTGTTGGTGCTAAAGGACACGGGGATTATTACGATATAACGCGGGT
ATTTGGCTCTGTACGCGGTCGTGGTGGCTTCGGAGGGGCCGGGCGTGGAG
GTGGTGGAGGACGTGGGCGGGGCTACGGCTGTGGTCGCGGCAGAGGAGGA
GGAGGAATAGGACGAGGAGGTGGGAGGTAGATGGCCACTAGGGGCGTGGC
AAGCAGTAGTATAGCTGGCACCAAGGAACTGAATGCCAAGGAACGGCGGC
TGCTTCGACGGGCACAAGAGAGGATGGCAGCCGAGTCTGGCCCCCTTGCG
CCCCCGACTCCCACCACCATCACCAAGACCAAAGTCACTTCTGTTTCTAT
AACTAAGGGTAAGAATACCACTACTACCCCTTCCCTCATCGAATCTGTCG
CCAAAAAGGTGTCAAGTAAGGATATCATGCCGTTTACCATGCCTCCTGGA
GGTCTAGAGAGCCTGAATGCCAAGCAGCGGCGTCTCTACAAGCGCGCGCA
AGGGCGGGCAGCGCAAGAAGCAGGCCCAGTCGCAACCCAAATTAATGCAG
ACACCAGCACTCGCGTAAAGAGAAAACGATCCGTGGAAACCCCGCACATT
GTCTTCGTGGGACAGCTTGGATTTAAGACAACTGCCGAGGCATTGCAGGA
GCACTTGGAGAAGGGTGGAGTGGCAGGCATCGTGCATGTGCGGTTGCTCA
CCGAGAAGGGCACTGGTAAGTCACGTGGTCAGGCATTCGTTACGCTGATC
GATGCCGAGAATCAGTATAAATGCCTGTCATTGCACCACACCAAGTTGGA
TGGGCGGGTGATTAACGTGGAGCGGTCGTGTGGAGGCAAGAACGTGGATA
AGCGCAAGGAGAAGATCACGGCGCTGCGCGGGGAGCAGAAGGTGGCATTG
CGAGCGACTTGCAATCGGATTCTAAAGGAAAAGATTGAAGCTGGTGAACT
CAAGCCGGGGGAGTTGGATGAGCAAGCTGTGGGCTTGTTGACTCGGTACG
ATGGGGGGATGGCGTCGGCGATTTTGGAAGCGTATTGTGCAGAGGACAGG
GATAGGTTGAGAAACCGCTCTGCTTACTTTATGATGCTGGCCAAGCGGGT
CATCGATGAGGGAATTGAGGCA
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Synonyms
Publications