jgi.p|Nanoce1779_2|586015, mRNA_3978 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586015
Unique NamemRNA_3978
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length570
Alignment locationscaffold_8:543902..544471 -

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Properties
Property NameValue
TranscriptId586101
TrackFilteredModels2
ProteinId586015
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:543902..544471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586015gene_3978Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586015mRNA_3978-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3978CDS_3978Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3978 ID=mRNA_3978|Name=jgi.p|Nanoce1779_2|586015|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
AGGACGTGGGCGGGGCTACGGCTGTGGTCGCGGCAGAGGAGGAGGAGGAA
TAGGACGAGGAGGTGGGAGGTAGACCAGGACAAGGTATGTACCCTTGTGT
GAAGTTAGGATGGGTGGATATATGTGTATGTTTGTGGGTTTGGTGGTCAA
CCTGATGAATAACTTTAAACTATCATGCGTGTCAACGTACACCGCTTCCC
TTGTCATAAGGGCAAGGGTGGATGATGAGTGATTTTCTAATCTTCTCTCT
GAGATTAACTACCAGCCAAACTTTATACAATTTTTATCTCTTGTCCCTTC
TTCTTTGGCGGGGGGAATCAGCCGTCGTATTGACACATACTTCCTTCCCT
CTCTCCTTCCACCTTCTCTTCCCCACGCATTCCTTTATATCAACAGGGCA
CCATCCCATTTCACCTACGGACGCGCACGAACACATTTTTCACATAGCAG
CCACTGCTACTACCTCGCATCCTAAAGCAAGGGGCAACGGTGGAAGGATA
AGCAAAGAGTACAGAAACAAATATAGTTTTAATTACATTCCGAAAGCACC
GTCAACGTTTTGAAACACTA
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protein sequence of jgi.p|Nanoce1779_2|586015

>mRNA_3978-protein ID=mRNA_3978-protein|Name=jgi.p|Nanoce1779_2|586015|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MMSDFLIFSLRLTTSQTLYNFYLLSLLLWRGESAVVLTHTSFPLSFHLLF
PTHSFISTGHHPISPTDAHEHIFHIAATATTSHPKARGNGGRISKEYRNK
YSFNYIPKAPSTF*
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mRNA from alignment at scaffold_8:543902..544471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3978 ID=mRNA_3978|Name=jgi.p|Nanoce1779_2|586015|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at scaffold_8:543902..544471- (Nannochloropsis oceanica)
AGGACGTGGGCGGGGCTACGGCTGTGGTCGCGGCAGAGGAGGAGGAGGAA
TAGGACGAGGAGGTGGGAGGTAGACCAGGACAAGGTATGTACCCTTGTGT
GAAGTTAGGATGGGTGGATATATGTGTATGTTTGTGGGTTTGGTGGTCAA
CCTGATGAATAACTTTAAACTATCATGCGTGTCAACGTACACCGCTTCCC
TTGTCATAAGGGCAAGGGTGGATGATGAGTGATTTTCTAATCTTCTCTCT
GAGATTAACTACCAGCCAAACTTTATACAATTTTTATCTCTTGTCCCTTC
TTCTTTGGCGGGGGGAATCAGCCGTCGTATTGACACATACTTCCTTCCCT
CTCTCCTTCCACCTTCTCTTCCCCACGCATTCCTTTATATCAACAGGGCA
CCATCCCATTTCACCTACGGACGCGCACGAACACATTTTTCACATAGCAG
CCACTGCTACTACCTCGCATCCTAAAGCAAGGGGCAACGGTGGAAGGATA
AGCAAAGAGTACAGAAACAAATATAGTTTTAATTACATTCCGAAAGCACC
GTCAACGTTTTGAAACACTA
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Coding sequence (CDS) from alignment at scaffold_8:543902..544471-

>mRNA_3978 ID=mRNA_3978|Name=jgi.p|Nanoce1779_2|586015|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_8:543902..544471- (Nannochloropsis oceanica)
ATGATGAGTGATTTTCTAATCTTCTCTCTGAGATTAACTACCAGCCAAAC
TTTATACAATTTTTATCTCTTGTCCCTTCTTCTTTGGCGGGGGGAATCAG
CCGTCGTATTGACACATACTTCCTTCCCTCTCTCCTTCCACCTTCTCTTC
CCCACGCATTCCTTTATATCAACAGGGCACCATCCCATTTCACCTACGGA
CGCGCACGAACACATTTTTCACATAGCAGCCACTGCTACTACCTCGCATC
CTAAAGCAAGGGGCAACGGTGGAAGGATAAGCAAAGAGTACAGAAACAAA
TATAGTTTTAATTACATTCCGAAAGCACCGTCAACGTTTTGA
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Synonyms
Publications