jgi.p|Nanoce1779_2|670197, mRNA_3976 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670197
Unique NamemRNA_3976
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1002
Alignment locationscaffold_8:539191..540818 -

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Properties
Property NameValue
TranscriptId670283
TrackFilteredModels2
ProteinId670197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:539191..540818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670197gene_3976Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670197mRNA_3976-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3976CDS_3976Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3976 ID=mRNA_3976|Name=jgi.p|Nanoce1779_2|670197|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
AACAGATTATATACACCTACATCGACGATGCTCAGTAAGACATTTTCCTT
TCTGGCTGGTATGGCCGCTCTCGCCGTCAGCGCGGCTGACGATGCAACCA
AGGTGACTCATAAGGTCTTCTTTGACATCAACGTGGGGGACAAGCCCGCG
GGCCGCATCGTCTTTGGGCTGTACGGGAACACCGTCCCTAAGACTGTGGA
GAATTTCCGCGCGCTTTGCACGGGCGAGAAGGGCATGGGCAAGCAGGGTC
ATGAGCTCACCTACAAGGGGTCCAAGTTCCATCGTGTGATTCCCTCCTTC
ATGTTGCAGGGCGGGGACTTCACCCACGGCAATGGCATGGGCGGCGAGTC
TATCTATGGAGCCAAATTTGCTGACGAAAATTTCACCCTCAAGCACTCTC
GCCCGGGCCTCCTGTCTATGGCCAATGCCGGGCGTGACACCAACGGCTCC
CAATTCTTCATTACCACGGTGGTCACCTCCTGGTTGGACGGGCGTCATGT
TGTGTTTGGCGAGGTGCTGGAGGGCATGGACGTGGTCAAGATGATCGAGG
GCTTGGGCAGCAATGACGGGACGGTCAAGACCCCGGTGGTGATTGCCGAC
TCGGGGGAGCTAAAGTAAACGAATTCAGGATTAGGACCGATAGGTCGCTT
TTCCACATGTACTTTGTTGTTGTCGTAGTTGATAGGTTCAGCCCCTTTCA
TTAACGGCACTGGATCACTGGAACGCGGTGGCTGGGACAAGACACGAAGC
AGTAAGACGGCGAAGATAAAAAAGCAAAAGAGACGGATAAAAAGACGCAC
AGAAAGTTCTAGAACGCTTTCAGCGAGAAGTATGAAAGAGGAGTGTGAAC
AGGGGAAAGGAGAGGACGGAACATGATGGGCACGTGTATCGGTCTACTTG
TCTTGAGAAATGTGCTCGGCAATCCCCTCCGAGAAAGGAAAAATTAGATA
AAAAAGTGTGGGAGACAACGATAGCAAGGATACATACGTTGTCACGCGAG
AT
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protein sequence of jgi.p|Nanoce1779_2|670197

>mRNA_3976-protein ID=mRNA_3976-protein|Name=jgi.p|Nanoce1779_2|670197|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MLSKTFSFLAGMAALAVSAADDATKVTHKVFFDINVGDKPAGRIVFGLYG
NTVPKTVENFRALCTGEKGMGKQGHELTYKGSKFHRVIPSFMLQGGDFTH
GNGMGGESIYGAKFADENFTLKHSRPGLLSMANAGRDTNGSQFFITTVVT
SWLDGRHVVFGEVLEGMDVVKMIEGLGSNDGTVKTPVVIADSGELK*
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mRNA from alignment at scaffold_8:539191..540818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3976 ID=mRNA_3976|Name=jgi.p|Nanoce1779_2|670197|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp|location=Sequence derived from alignment at scaffold_8:539191..540818- (Nannochloropsis oceanica)
AACAGATTATATACACCTACATCGACGATGCTCAGTAAGACATTTTCCTT
TCTGGCTGGTATGGCCGCTCTCGCCGTCAGGTACGCACCCACACGCACCC
CCTATTTTTTCCCCGTAGTCGAATCTCAGTGAGCATTCGAACGTAGTTAT
TCGTTCGTTTCCTTTTTGTTCATCTCAAGCATAAACTCCATTCTGCCACG
CACCAAATACACAGCGCGGCTGACGATGCAACCAAGGTGACTCATAAGGT
CTTCTTTGACATCAACGTGGGGGACAAGGTACGTTTCTTTTCGGTAACGT
GATGGCAGGCATCAAGAAGCTTATCAATTCCTCGCATCGCCTCCTACCCC
TTCGCATCGCTCGCACCCTCTTTCCCAGCCCGCGGGCCGCATCGTCTTTG
GGCTGTACGGGAACACCGTCCCTAAGACTGTGGAGAATTTCCGCGCGCTT
TGCACGGGCGAGAAGGGCATGGGCAAGCAGGGTCATGAGCTCACCTACAA
GGGGTCCAAGTTCCATCGTGTGATTCCCTCCTTCATGTTGCAGGGCGGGG
ACTTCACCCACGGCAATGGCATGGGCGGCGAGTCTATCTATGGGTATGTG
TGACAGAATAGAAGGGTTTGTTGGGATGAATGGTGACGAGGCACATTTTG
AAAAAAATGCTTCTCTATCGAGCAAGGTAACACCATTTCTGAATGTTTGT
TCCATCAGCTTCCGCTCACGGCTCACGGACTCTTTTCTCTTTTCCTTTCT
ATTTTCTCGCCACATCACAGAGCCAAATTTGCTGACGAAAATTTCACCCT
CAAGCACTCTCGCCCGGGCCTCCTGTCTATGGCCAATGCCGGGCGTGACA
CCAACGGCTCCCAATTCTTCATTACCACGGTGGTCACCTCCTGGTACTGT
TGGTTTGGGTTTTTGTTTTGATTAATTTGGGTTTTAGTATTGCTTAGTAT
GGGTTTTGTATTTCTTATTGGTAGTCCTGTCTGCTTTTACTCATTTATCC
ATACATCGTACCTGTTTGCTTCATATTGGCACTCCCACGTTTATTGTTAT
TCATTGACCTTATCCTTCCTTTTCCCTTTTTTTTTGTCTTGTTGCATTTT
CTATATAGGTTGGACGGGCGTCATGTTGTGTTTGGCGAGGTGCTGGAGGG
CATGGACGTGGTCAAGATGATCGAGGGCTTGGGCAGCAATGACGGGACGG
TCAAGACCCCGGTGGTGATTGCCGACTCGGGGGAGCTAAAGTAAACGAAT
TCAGGATTAGGACCGATAGGTCGCTTTTCCACATGTACTTTGTTGTTGTC
GTAGTTGATAGGTTCAGCCCCTTTCATTAACGGCACTGGATCACTGGAAC
GCGGTGGCTGGGACAAGACACGAAGCAGTAAGACGGCGAAGATAAAAAAG
CAAAAGAGACGGATAAAAAGACGCACAGAAAGTTCTAGAACGCTTTCAGC
GAGAAGTATGAAAGAGGAGTGTGAACAGGGGAAAGGAGAGGACGGAACAT
GATGGGCACGTGTATCGGTCTACTTGTCTTGAGAAATGTGCTCGGCAATC
CCCTCCGAGAAAGGAAAAATTAGATAAAAAAGTGTGGGAGACAACGATAG
CAAGGATACATACGTTGTCACGCGAGAT
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Coding sequence (CDS) from alignment at scaffold_8:539191..540818-

>mRNA_3976 ID=mRNA_3976|Name=jgi.p|Nanoce1779_2|670197|organism=Nannochloropsis oceanica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_8:539191..540818- (Nannochloropsis oceanica)
GTTGGACGGGCGTCATGTTGTGTTTGGCGAGGTGCTGGAGGGCATGGACG
TGGTCAAGATGATCGAGGGCTTGGGCAGCAATGACGGGACGGTCAAGACC
CCGGTGGTGATTGCCGACTCGGGGGAGCTAAAGTAAAGCCAAATTTGCTG
ACGAAAATTTCACCCTCAAGCACTCTCGCCCGGGCCTCCTGTCTATGGCC
AATGCCGGGCGTGACACCAACGGCTCCCAATTCTTCATTACCACGGTGGT
CACCTCCTGCCCGCGGGCCGCATCGTCTTTGGGCTGTACGGGAACACCGT
CCCTAAGACTGTGGAGAATTTCCGCGCGCTTTGCACGGGCGAGAAGGGCA
TGGGCAAGCAGGGTCATGAGCTCACCTACAAGGGGTCCAAGTTCCATCGT
GTGATTCCCTCCTTCATGTTGCAGGGCGGGGACTTCACCCACGGCAATGG
CATGGGCGGCGAGTCTATCTATGGCGCGGCTGACGATGCAACCAAGGTGA
CTCATAAGGTCTTCTTTGACATCAACGTGGGGGACAAGATGCTCAGTAAG
ACATTTTCCTTTCTGGCTGGTATGGCCGCTCTCGCCGTCAGGTTGGACGG
GCGTCATGTTGTGTTTGGCGAGGTGCTGGAGGGCATGGACGTGGTCAAGA
TGATCGAGGGCTTGGGCAGCAATGACGGGACGGTCAAGACCCCGGTGGTG
ATTGCCGACTCGGGGGAGCTAAAGTAAAGCCAAATTTGCTGACGAAAATT
TCACCCTCAAGCACTCTCGCCCGGGCCTCCTGTCTATGGCCAATGCCGGG
CGTGACACCAACGGCTCCCAATTCTTCATTACCACGGTGGTCACCTCCTG
CCCGCGGGCCGCATCGTCTTTGGGCTGTACGGGAACACCGTCCCTAAGAC
TGTGGAGAATTTCCGCGCGCTTTGCACGGGCGAGAAGGGCATGGGCAAGC
AGGGTCATGAGCTCACCTACAAGGGGTCCAAGTTCCATCGTGTGATTCCC
TCCTTCATGTTGCAGGGCGGGGACTTCACCCACGGCAATGGCATGGGCGG
CGAGTCTATCTATGGCGCGGCTGACGATGCAACCAAGGTGACTCATAAGG
TCTTCTTTGACATCAACGTGGGGGACAAGATGCTCAGTAAGACATTTTCC
TTTCTGGCTGGTATGGCCGCTCTCGCCGTCAGGTTGGACGGGCGTCATGT
TGTGTTTGGCGAGGTGCTGGAGGGCATGGACGTGGTCAAGATGATCGAGG
GCTTGGGCAGCAATGACGGGACGGTCAAGACCCCGGTGGTGATTGCCGAC
TCGGGGGAGCTAAAGTAAAGCCAAATTTGCTGACGAAAATTTCACCCTCA
AGCACTCTCGCCCGGGCCTCCTGTCTATGGCCAATGCCGGGCGTGACACC
AACGGCTCCCAATTCTTCATTACCACGGTGGTCACCTCCTGCCCGCGGGC
CGCATCGTCTTTGGGCTGTACGGGAACACCGTCCCTAAGACTGTGGAGAA
TTTCCGCGCGCTTTGCACGGGCGAGAAGGGCATGGGCAAGCAGGGTCATG
AGCTCACCTACAAGGGGTCCAAGTTCCATCGTGTGATTCCCTCCTTCATG
TTGCAGGGCGGGGACTTCACCCACGGCAATGGCATGGGCGGCGAGTCTAT
CTATGGCGCGGCTGACGATGCAACCAAGGTGACTCATAAGGTCTTCTTTG
ACATCAACGTGGGGGACAAGATGCTCAGTAAGACATTTTCCTTTCTGGCT
GGTATGGCCGCTCTCGCCGTCAGGTTGGACGGGCGTCATGTTGTGTTTGG
CGAGGTGCTGGAGGGCATGGACGTGGTCAAGATGATCGAGGGCTTGGGCA
GCAATGACGGGACGGTCAAGACCCCGGTGGTGATTGCCGACTCGGGGGAG
CTAAAGTAAAGCCAAATTTGCTGACGAAAATTTCACCCTCAAGCACTCTC
GCCCGGGCCTCCTGTCTATGGCCAATGCCGGGCGTGACACCAACGGCTCC
CAATTCTTCATTACCACGGTGGTCACCTCCTGCCCGCGGGCCGCATCGTC
TTTGGGCTGTACGGGAACACCGTCCCTAAGACTGTGGAGAATTTCCGCGC
GCTTTGCACGGGCGAGAAGGGCATGGGCAAGCAGGGTCATGAGCTCACCT
ACAAGGGGTCCAAGTTCCATCGTGTGATTCCCTCCTTCATGTTGCAGGGC
GGGGACTTCACCCACGGCAATGGCATGGGCGGCGAGTCTATCTATGGCGC
GGCTGACGATGCAACCAAGGTGACTCATAAGGTCTTCTTTGACATCAACG
TGGGGGACAAGATGCTCAGTAAGACATTTTCCTTTCTGGCTGGTATGGCC
GCTCTCGCCGTCAGGTTGGACGGGCGTCATGTTGTGTTTGGCGAGGTGCT
GGAGGGCATGGACGTGGTCAAGATGATCGAGGGCTTGGGCAGCAATGACG
GGACGGTCAAGACCCCGGTGGTGATTGCCGACTCGGGGGAGCTAAAGTAA
AGCCAAATTTGCTGACGAAAATTTCACCCTCAAGCACTCTCGCCCGGGCC
TCCTGTCTATGGCCAATGCCGGGCGTGACACCAACGGCTCCCAATTCTTC
ATTACCACGGTGGTCACCTCCTGCCCGCGGGCCGCATCGTCTTTGGGCTG
TACGGGAACACCGTCCCTAAGACTGTGGAGAATTTCCGCGCGCTTTGCAC
GGGCGAGAAGGGCATGGGCAAGCAGGGTCATGAGCTCACCTACAAGGGGT
CCAAGTTCCATCGTGTGATTCCCTCCTTCATGTTGCAGGGCGGGGACTTC
ACCCACGGCAATGGCATGGGCGGCGAGTCTATCTATGGCGCGGCTGACGA
TGCAACCAAGGTGACTCATAAGGTCTTCTTTGACATCAACGTGGGGGACA
AGATGCTCAGTAAGACATTTTCCTTTCTGGCTGGTATGGCCGCTCTCGCC
GTCAG
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Synonyms
Publications