jgi.p|Nanoce1779_2|586003, mRNA_3974 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586003
Unique NamemRNA_3974
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2172
Alignment locationscaffold_8:534909..537080 -

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Properties
Property NameValue
TranscriptId586089
TrackFilteredModels2
ProteinId586003
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:534909..537080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586003gene_3974Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586003mRNA_3974-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3974CDS_3974Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3974 ID=mRNA_3974|Name=jgi.p|Nanoce1779_2|586003|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
GGCCGGCAGCTCAATACAGGCACTATTGTTGCTGTCATCTCCATGGTAGT
GCTTGGGCTTGGGCTGTTTGGGGGTTTTAGGGAGGGCATGGGTGTGCTGA
AACGAGAAATACAGAAGCAACAAGCGTGGCGACGCTGAAGTGGCGACGAC
CGAGCGCTTTGCGCTTTGACTGCAACTCTACTAGGCAAGGTATGGCAATG
CCACAAAAACAATATTGTGTAGTCTTTCTTACGAGGGAGGTGCCAGCTGC
TCCTGAGCTGTCTTATGCCACAGAGAGGTCCTGTCTAGGACATCCGAGAC
CCCCACATCAGCAAACCTCCTCACCCCTCTCCCATCCGACCAACCTCAAA
ATCCGACCAACCTCAAAATCTCTTAGGGATGGGCAGGCTCAGCTCTCACA
AGAGGCTCCTTCCATTTGTCATGCTGCTCTCCATTTTACGCGGAATCGCG
GCGCGTCGCAACCCAGTCAGTCGAGCAGCCTTTGTCTTCTTGCACCCTAG
TCCCTCCCAATCGATTACGATTACCTCCACCGTTAGTGCTGCCTCCTACA
CTCGTCCCTCCTTGCCCATGCGACGCACCAACGGGGGTCGCATCAAATCG
ACCGTCGTACCTTTGACGCAAAGGGACGAAGAGGACGCGGATAACGCCGC
TCCCGCCCAGCCGAAGCAAAAGAAGCAACAGGCCCGCAAGCAAAAACCAT
GGCAAGGTCCTTTCCTATACCATGAGGAGCTCGAGCTCACTGTCGATAGT
CTTACCAATCTGGGCCTCGGCATTTGCCGCACATCCTTGCCATTACAATC
ATCCCCAACGTTCACAAGTGACTCGAATTCCTCTTCGTCACCTATACCAC
CACCACCGCCTGTAGAAAGAGAGAGATCAGCAGCACCAGTGGCGCCGGAA
AGCTGGGTGATAATGGTCCCCGGTGTCATTCCCGGCGAGCGGATCCGCCT
CCGCATCTACCGCAACCACAAAAACTACTCAGAAGCTGATCTAGTCGAAG
TCATAGAAGCTTCTCCAGCCCGTGTTGAGCCCGTTTGTTCTTTGTTTGGG
AGGTGTGGGGGTTGTCAATACCAACATATGAGTATAACTGCCCAGAGAGA
TTGGAAACAACAGCATGTCGTTGACGTGCTTGCCCGGACAGGAAACATCA
CGAATGTGGCCGTGCAGAAAGTAATTGGGACAGATGACGTGTTGGGGTAC
CGCAGTAAGATTACCCCCCACCACGAAAAACCTCGTGGGGGAGAAATCAA
AGATATTGGCTTCCTTAAGCTCGGTTCTCGAGCCTTAGTCGACGTCGAGC
AATGCGCCATCGCCACTCCAGCAATCAATGCCCGATTGATGGGACTTCGA
GAAGAGGTCCGTGCACGAGCCCGCGCTGCGGCAGCGGAGGAGACTCCCAA
GAAACCGAAGGGGGCAACATTGTTCTTGAGAGAAACGCAGGAGGGGGTGG
TGACTGACCCGAGGGTAGAAGTGTCGGATAAAATCAGGGGGTTGACGTTT
AAATACACGGCGGGCAGTTTCTTTCAAAATAATCCGTTTATGTTGCCGGA
GATGGTTGGATACGTGACAGGAAAGGCGAGGGAAGGAGGAATGAGGTTTT
TGGTGGACGCTTACTGTGGGGGGGGGTTGTTTTGTCTCTCAGCAAGTAAG
GATTTCGAGGCGTGTTATGGGGTGGAGATAAGTGAGTTGGCTATACTAAG
TGCAAGGAGGAACGCCGACTTAAACGAGATTACGAATTGTCACTTTCGCG
CGGGGGATGCGAGTGATATATTCGCGGGGATAAAGCATATACGAGGTCAG
GAAACGGTAATGATCATAGACCCCCCCCGCAAAGGGTGTGATGAAGACTT
TTTGACGCAGCTTTGTGCGTTTCGACCGGCAAGGATTGTGTACGTAAGTT
GTGACCCAGCCACGCAAGCGAGAGACGCGCAGGTGCTTGTAAGGAGTGGA
TATGAAATCGAGGAGCTCCAGCCTTTTGATTTGTTCCCTCAGACGAGGCA
TATTGAGAATGTGATTGTATTCGCTGACGCTCGGTTAAGTGGGCCGGGAC
ACGGCCCTGCAGCGCCAGCAGCGGCAGAATGAGAGATGGGGGACGAGGAC
GTTAATGAAACCGATGTGACATAGAAAGAGACAATGGGCAGAAGGCAAAG
AATCTTTTCCGCCAAAGCACAA
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protein sequence of jgi.p|Nanoce1779_2|586003

>mRNA_3974-protein ID=mRNA_3974-protein|Name=jgi.p|Nanoce1779_2|586003|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MGRLSSHKRLLPFVMLLSILRGIAARRNPVSRAAFVFLHPSPSQSITITS
TVSAASYTRPSLPMRRTNGGRIKSTVVPLTQRDEEDADNAAPAQPKQKKQ
QARKQKPWQGPFLYHEELELTVDSLTNLGLGICRTSLPLQSSPTFTSDSN
SSSSPIPPPPPVERERSAAPVAPESWVIMVPGVIPGERIRLRIYRNHKNY
SEADLVEVIEASPARVEPVCSLFGRCGGCQYQHMSITAQRDWKQQHVVDV
LARTGNITNVAVQKVIGTDDVLGYRSKITPHHEKPRGGEIKDIGFLKLGS
RALVDVEQCAIATPAINARLMGLREEVRARARAAAAEETPKKPKGATLFL
RETQEGVVTDPRVEVSDKIRGLTFKYTAGSFFQNNPFMLPEMVGYVTGKA
REGGMRFLVDAYCGGGLFCLSASKDFEACYGVEISELAILSARRNADLNE
ITNCHFRAGDASDIFAGIKHIRGQETVMIIDPPRKGCDEDFLTQLCAFRP
ARIVYVSCDPATQARDAQVLVRSGYEIEELQPFDLFPQTRHIENVIVFAD
ARLSGPGHGPAAPAAAE*
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mRNA from alignment at scaffold_8:534909..537080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3974 ID=mRNA_3974|Name=jgi.p|Nanoce1779_2|586003|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at scaffold_8:534909..537080- (Nannochloropsis oceanica)
GGCCGGCAGCTCAATACAGGCACTATTGTTGCTGTCATCTCCATGGTAGT
GCTTGGGCTTGGGCTGTTTGGGGGTTTTAGGGAGGGCATGGGTGTGCTGA
AACGAGAAATACAGAAGCAACAAGCGTGGCGACGCTGAAGTGGCGACGAC
CGAGCGCTTTGCGCTTTGACTGCAACTCTACTAGGCAAGGTATGGCAATG
CCACAAAAACAATATTGTGTAGTCTTTCTTACGAGGGAGGTGCCAGCTGC
TCCTGAGCTGTCTTATGCCACAGAGAGGTCCTGTCTAGGACATCCGAGAC
CCCCACATCAGCAAACCTCCTCACCCCTCTCCCATCCGACCAACCTCAAA
ATCCGACCAACCTCAAAATCTCTTAGGGATGGGCAGGCTCAGCTCTCACA
AGAGGCTCCTTCCATTTGTCATGCTGCTCTCCATTTTACGCGGAATCGCG
GCGCGTCGCAACCCAGTCAGTCGAGCAGCCTTTGTCTTCTTGCACCCTAG
TCCCTCCCAATCGATTACGATTACCTCCACCGTTAGTGCTGCCTCCTACA
CTCGTCCCTCCTTGCCCATGCGACGCACCAACGGGGGTCGCATCAAATCG
ACCGTCGTACCTTTGACGCAAAGGGACGAAGAGGACGCGGATAACGCCGC
TCCCGCCCAGCCGAAGCAAAAGAAGCAACAGGCCCGCAAGCAAAAACCAT
GGCAAGGTCCTTTCCTATACCATGAGGAGCTCGAGCTCACTGTCGATAGT
CTTACCAATCTGGGCCTCGGCATTTGCCGCACATCCTTGCCATTACAATC
ATCCCCAACGTTCACAAGTGACTCGAATTCCTCTTCGTCACCTATACCAC
CACCACCGCCTGTAGAAAGAGAGAGATCAGCAGCACCAGTGGCGCCGGAA
AGCTGGGTGATAATGGTCCCCGGTGTCATTCCCGGCGAGCGGATCCGCCT
CCGCATCTACCGCAACCACAAAAACTACTCAGAAGCTGATCTAGTCGAAG
TCATAGAAGCTTCTCCAGCCCGTGTTGAGCCCGTTTGTTCTTTGTTTGGG
AGGTGTGGGGGTTGTCAATACCAACATATGAGTATAACTGCCCAGAGAGA
TTGGAAACAACAGCATGTCGTTGACGTGCTTGCCCGGACAGGAAACATCA
CGAATGTGGCCGTGCAGAAAGTAATTGGGACAGATGACGTGTTGGGGTAC
CGCAGTAAGATTACCCCCCACCACGAAAAACCTCGTGGGGGAGAAATCAA
AGATATTGGCTTCCTTAAGCTCGGTTCTCGAGCCTTAGTCGACGTCGAGC
AATGCGCCATCGCCACTCCAGCAATCAATGCCCGATTGATGGGACTTCGA
GAAGAGGTCCGTGCACGAGCCCGCGCTGCGGCAGCGGAGGAGACTCCCAA
GAAACCGAAGGGGGCAACATTGTTCTTGAGAGAAACGCAGGAGGGGGTGG
TGACTGACCCGAGGGTAGAAGTGTCGGATAAAATCAGGGGGTTGACGTTT
AAATACACGGCGGGCAGTTTCTTTCAAAATAATCCGTTTATGTTGCCGGA
GATGGTTGGATACGTGACAGGAAAGGCGAGGGAAGGAGGAATGAGGTTTT
TGGTGGACGCTTACTGTGGGGGGGGGTTGTTTTGTCTCTCAGCAAGTAAG
GATTTCGAGGCGTGTTATGGGGTGGAGATAAGTGAGTTGGCTATACTAAG
TGCAAGGAGGAACGCCGACTTAAACGAGATTACGAATTGTCACTTTCGCG
CGGGGGATGCGAGTGATATATTCGCGGGGATAAAGCATATACGAGGTCAG
GAAACGGTAATGATCATAGACCCCCCCCGCAAAGGGTGTGATGAAGACTT
TTTGACGCAGCTTTGTGCGTTTCGACCGGCAAGGATTGTGTACGTAAGTT
GTGACCCAGCCACGCAAGCGAGAGACGCGCAGGTGCTTGTAAGGAGTGGA
TATGAAATCGAGGAGCTCCAGCCTTTTGATTTGTTCCCTCAGACGAGGCA
TATTGAGAATGTGATTGTATTCGCTGACGCTCGGTTAAGTGGGCCGGGAC
ACGGCCCTGCAGCGCCAGCAGCGGCAGAATGAGAGATGGGGGACGAGGAC
GTTAATGAAACCGATGTGACATAGAAAGAGACAATGGGCAGAAGGCAAAG
AATCTTTTCCGCCAAAGCACAA
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Coding sequence (CDS) from alignment at scaffold_8:534909..537080-

>mRNA_3974 ID=mRNA_3974|Name=jgi.p|Nanoce1779_2|586003|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_8:534909..537080- (Nannochloropsis oceanica)
ATGGGCAGGCTCAGCTCTCACAAGAGGCTCCTTCCATTTGTCATGCTGCT
CTCCATTTTACGCGGAATCGCGGCGCGTCGCAACCCAGTCAGTCGAGCAG
CCTTTGTCTTCTTGCACCCTAGTCCCTCCCAATCGATTACGATTACCTCC
ACCGTTAGTGCTGCCTCCTACACTCGTCCCTCCTTGCCCATGCGACGCAC
CAACGGGGGTCGCATCAAATCGACCGTCGTACCTTTGACGCAAAGGGACG
AAGAGGACGCGGATAACGCCGCTCCCGCCCAGCCGAAGCAAAAGAAGCAA
CAGGCCCGCAAGCAAAAACCATGGCAAGGTCCTTTCCTATACCATGAGGA
GCTCGAGCTCACTGTCGATAGTCTTACCAATCTGGGCCTCGGCATTTGCC
GCACATCCTTGCCATTACAATCATCCCCAACGTTCACAAGTGACTCGAAT
TCCTCTTCGTCACCTATACCACCACCACCGCCTGTAGAAAGAGAGAGATC
AGCAGCACCAGTGGCGCCGGAAAGCTGGGTGATAATGGTCCCCGGTGTCA
TTCCCGGCGAGCGGATCCGCCTCCGCATCTACCGCAACCACAAAAACTAC
TCAGAAGCTGATCTAGTCGAAGTCATAGAAGCTTCTCCAGCCCGTGTTGA
GCCCGTTTGTTCTTTGTTTGGGAGGTGTGGGGGTTGTCAATACCAACATA
TGAGTATAACTGCCCAGAGAGATTGGAAACAACAGCATGTCGTTGACGTG
CTTGCCCGGACAGGAAACATCACGAATGTGGCCGTGCAGAAAGTAATTGG
GACAGATGACGTGTTGGGGTACCGCAGTAAGATTACCCCCCACCACGAAA
AACCTCGTGGGGGAGAAATCAAAGATATTGGCTTCCTTAAGCTCGGTTCT
CGAGCCTTAGTCGACGTCGAGCAATGCGCCATCGCCACTCCAGCAATCAA
TGCCCGATTGATGGGACTTCGAGAAGAGGTCCGTGCACGAGCCCGCGCTG
CGGCAGCGGAGGAGACTCCCAAGAAACCGAAGGGGGCAACATTGTTCTTG
AGAGAAACGCAGGAGGGGGTGGTGACTGACCCGAGGGTAGAAGTGTCGGA
TAAAATCAGGGGGTTGACGTTTAAATACACGGCGGGCAGTTTCTTTCAAA
ATAATCCGTTTATGTTGCCGGAGATGGTTGGATACGTGACAGGAAAGGCG
AGGGAAGGAGGAATGAGGTTTTTGGTGGACGCTTACTGTGGGGGGGGGTT
GTTTTGTCTCTCAGCAAGTAAGGATTTCGAGGCGTGTTATGGGGTGGAGA
TAAGTGAGTTGGCTATACTAAGTGCAAGGAGGAACGCCGACTTAAACGAG
ATTACGAATTGTCACTTTCGCGCGGGGGATGCGAGTGATATATTCGCGGG
GATAAAGCATATACGAGGTCAGGAAACGGTAATGATCATAGACCCCCCCC
GCAAAGGGTGTGATGAAGACTTTTTGACGCAGCTTTGTGCGTTTCGACCG
GCAAGGATTGTGTACGTAAGTTGTGACCCAGCCACGCAAGCGAGAGACGC
GCAGGTGCTTGTAAGGAGTGGATATGAAATCGAGGAGCTCCAGCCTTTTG
ATTTGTTCCCTCAGACGAGGCATATTGAGAATGTGATTGTATTCGCTGAC
GCTCGGTTAAGTGGGCCGGGACACGGCCCTGCAGCGCCAGCAGCGGCAGA
ATGA
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Synonyms
Publications