jgi.p|Nanoce1779_2|585994, mRNA_3972 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585994
Unique Name	mRNA_3972
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2399
Alignment location	scaffold_8:529224..531622 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586080
Track	FilteredModels2
ProteinId	585994

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:529224..531622 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585994	gene_3972	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585994	mRNA_3972-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3972	CDS_3972	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:529224..531622-
coding sequence from alignment at scaffold_8:529224..531622-

mRNA sequence

>mRNA_3972 ID=mRNA_3972|Name=jgi.p|Nanoce1779_2|585994|organism=Nannochloropsis oceanica|type=mRNA|length=2399bp
ACAGGCGCCACGGGTGTCGAGCGGCAGCCTTGGTACCAAGAAAGCAATGA
ACCGTACCGGTCCGGCCACGACCTTGATACGGACGGCGGCTGCAGCAGGG
GCACGTCGATGGGGGGCCTGTACAGCCACCCATAGCTTTCGCAGCAGCAG
CAGCAGCAGCAGCGCAACCGTCAGTATAATCAGTCGACGGCGACCTAGAG
CCATGCGGCCGCCGCCGCAGCAACAGCACCAAGCCTGCCCTGCATTTAGC
TCCCGGACATCTGAGCTGGAGCAGCAGGACCTGCACCCAGATGACGACAT
GAGGGGAGTTACCAGCAATAGCTGTGGAAGTGGAAGCGACAGTGAGGATG
ACAGCTCGGCCCTATTCAAAACACGGTCGCGGAGCAAGAAATCGGACCGT
CCAAACCACAACAGCAAGATTACTGCGGCGCAAATTGTGAAGCAACGGCA
GCGCAAAGTGTGTCAAATTTACAGCGGGGCGACGTTGGAGGAAGCGATCA
AGCTTTTAGCATCCAATAATTCCAGCAACTCTATGGTGTACGAAGAGAAA
GGTCCGGGCGGGCACAAAGAGGTCGTTGGTGTTTTCACTGCGCGGGACGT
GATTAAGAAATTGAACAAGCATGCAGATAAGCTTGAGGCTCTGCAGTCGA
CCGTCAGGCAAGTTATGACACCCATGTCGCGCGTCATCTTCTGCTCTCCC
GACGACACCGTTGAGAAAATTCAATATATTATGGTGGAGTTAAAGATACG
AACGTTGCCTGTGGTAAAGGATGGCGTGATTCACGGCATTATCACTTTGG
GGGATGTGATCAATCACTATTATTCGTCAGAGGAGATAGGGGGTAAGAAA
GCTTTCATCAAGGGAGTGGTGGGGAGGTTGGGTCTGCCGACAGGCACAAG
GGTCGCCTCGCATGTCGTTAAGGAGGGGGTGAAGAGAAGTATCAAGTGGA
AGGTGGGCATGGCAGCGTTGCCTCACCCGTTCAAGAGGCCGGATGGTGTG
GCGCCGAATTTGAGGATGCATGGTCCGATTGAATATGCAACGGACTTGGA
GCTGTCGGAGGATGCGTCATTTATTCTTACTTTGCCTTGGTTGCATGAGC
ATGGGGACGAGGCGACGTATGTGGGAATTGCGGATGGGGTGGGGTCTTGG
AGGGAACACGGGGTGGATCCGAGGGAGTACTCGCACCGGTTGATGAAATT
GTCGGAGGAGTTTATCCGAAGTATGGCGCCCAAGGCACCGAATCTGATGG
CGCCCATAGTGAGGCCATTGGATGTCCTGTCGAGTGCCTGGGAGGAGATC
ACGAAGGAGGAGGTGGTGGGAAGCAGTACGGCGTGTATTGCCACTCTGGA
CATGGAGCTGAATCAATTAAGCTTCTGTAATGTGGGCGATAATGGGATCA
TTATTATGAGACATATCGACTCAGACGTTGCGGGCTATATGCGTGATAAA
ACCACGCCGAGACCTCTCAGGACGAATGATTTTAGGATTGCCTTTGTCTC
GCGCCAACAATTGCGGAGTTTTAATTTGCCGTATCAACTGGGTCACACCA
ATACACAGTCGGAACATTGCTTTGACACTCCCTGCGATGCGGATAATTCT
TCGATTCCCGTCATGCGTGGAGATGTGATCATCATGGGCACGGATGGTTT
GTTTGACAACGTCGAGCTGGATGAAATCTGTTCAATTGCCTTGGCGTGGG
AACAGAAATGGTTCGCAAACGGCGCATATTCTTCGGGACTACGTGCAGCG
GATTTCCCCGAGGAAAGCGTGCAGGAGCTGGCGATGACGTTGTGTAAACG
AGCGAGGGAGTTGAGTTTGGACCAGAAGAGGGATAGTCCCTTTGCAATTC
TGGCGAAAGAGAATGACATTATGTGGGGGGGGGGGATGCCAGACGACTGT
ACAATTGTGGCGATGCGGGTGGTGAAGGTGTAAAAGGCCCATCCCTCTCT
CCCTCTCTCTCCCTCGCTTTTTTCCTTCCTGACCTGTTCTGCTTGTTGGA
CGATTGTATCATTGTGGCCACGGGCGTGGCAAGGAGAGAGGAAGGGAAGG
AGGGAAGGAGGGAATGTGGTTGTGGGGATGTAGGTAGGTTTCGTTTCTCT
CATATTCAATTTGCTTTGGAGGCATTGAAGGCGGCATCTAGCGGTCACAG
CTTTTCTTATCTTGCTTCCATTGGGGAAAGAAAAGTGGACAAAATTAGGT
GAGAAAGATCGCACTCATTATATGAAAAAAATAAAGATTTTTTTAAAGAG
TAGAGAAGTGTGAATGTGTTTGTTTTAAAATGTGAAGAGGCACACGATCC
AGCAACTTCCTCGCAACATTTCGCTTATATGCGACGAGTGGATAGGAAGA
GACGGAAGGGTGTAAACCAAAGAATCAACAACAGACTGTATGCTTAGAA

protein sequence of jgi.p|Nanoce1779_2|585994

>mRNA_3972-protein ID=mRNA_3972-protein|Name=jgi.p|Nanoce1779_2|585994|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MNRTGPATTLIRTAAAAGARRWGACTATHSFRSSSSSSSATVSIISRRRP
RAMRPPPQQQHQACPAFSSRTSELEQQDLHPDDDMRGVTSNSCGSGSDSE
DDSSALFKTRSRSKKSDRPNHNSKITAAQIVKQRQRKVCQIYSGATLEEA
IKLLASNNSSNSMVYEEKGPGGHKEVVGVFTARDVIKKLNKHADKLEALQ
STVRQVMTPMSRVIFCSPDDTVEKIQYIMVELKIRTLPVVKDGVIHGIIT
LGDVINHYYSSEEIGGKKAFIKGVVGRLGLPTGTRVASHVVKEGVKRSIK
WKVGMAALPHPFKRPDGVAPNLRMHGPIEYATDLELSEDASFILTLPWLH
EHGDEATYVGIADGVGSWREHGVDPREYSHRLMKLSEEFIRSMAPKAPNL
MAPIVRPLDVLSSAWEEITKEEVVGSSTACIATLDMELNQLSFCNVGDNG
IIIMRHIDSDVAGYMRDKTTPRPLRTNDFRIAFVSRQQLRSFNLPYQLGH
TNTQSEHCFDTPCDADNSSIPVMRGDVIIMGTDGLFDNVELDEICSIALA
WEQKWFANGAYSSGLRAADFPEESVQELAMTLCKRARELSLDQKRDSPFA
ILAKENDIMWGGGMPDDCTIVAMRVVKV*

mRNA from alignment at scaffold_8:529224..531622-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3972 ID=mRNA_3972|Name=jgi.p|Nanoce1779_2|585994|organism=Nannochloropsis oceanica|type=mRNA|length=2399bp|location=Sequence derived from alignment at scaffold_8:529224..531622- (Nannochloropsis oceanica)
ACAGGCGCCACGGGTGTCGAGCGGCAGCCTTGGTACCAAGAAAGCAATGA
ACCGTACCGGTCCGGCCACGACCTTGATACGGACGGCGGCTGCAGCAGGG
GCACGTCGATGGGGGGCCTGTACAGCCACCCATAGCTTTCGCAGCAGCAG
CAGCAGCAGCAGCGCAACCGTCAGTATAATCAGTCGACGGCGACCTAGAG
CCATGCGGCCGCCGCCGCAGCAACAGCACCAAGCCTGCCCTGCATTTAGC
TCCCGGACATCTGAGCTGGAGCAGCAGGACCTGCACCCAGATGACGACAT
GAGGGGAGTTACCAGCAATAGCTGTGGAAGTGGAAGCGACAGTGAGGATG
ACAGCTCGGCCCTATTCAAAACACGGTCGCGGAGCAAGAAATCGGACCGT
CCAAACCACAACAGCAAGATTACTGCGGCGCAAATTGTGAAGCAACGGCA
GCGCAAAGTGTGTCAAATTTACAGCGGGGCGACGTTGGAGGAAGCGATCA
AGCTTTTAGCATCCAATAATTCCAGCAACTCTATGGTGTACGAAGAGAAA
GGTCCGGGCGGGCACAAAGAGGTCGTTGGTGTTTTCACTGCGCGGGACGT
GATTAAGAAATTGAACAAGCATGCAGATAAGCTTGAGGCTCTGCAGTCGA
CCGTCAGGCAAGTTATGACACCCATGTCGCGCGTCATCTTCTGCTCTCCC
GACGACACCGTTGAGAAAATTCAATATATTATGGTGGAGTTAAAGATACG
AACGTTGCCTGTGGTAAAGGATGGCGTGATTCACGGCATTATCACTTTGG
GGGATGTGATCAATCACTATTATTCGTCAGAGGAGATAGGGGGTAAGAAA
GCTTTCATCAAGGGAGTGGTGGGGAGGTTGGGTCTGCCGACAGGCACAAG
GGTCGCCTCGCATGTCGTTAAGGAGGGGGTGAAGAGAAGTATCAAGTGGA
AGGTGGGCATGGCAGCGTTGCCTCACCCGTTCAAGAGGCCGGATGGTGTG
GCGCCGAATTTGAGGATGCATGGTCCGATTGAATATGCAACGGACTTGGA
GCTGTCGGAGGATGCGTCATTTATTCTTACTTTGCCTTGGTTGCATGAGC
ATGGGGACGAGGCGACGTATGTGGGAATTGCGGATGGGGTGGGGTCTTGG
AGGGAACACGGGGTGGATCCGAGGGAGTACTCGCACCGGTTGATGAAATT
GTCGGAGGAGTTTATCCGAAGTATGGCGCCCAAGGCACCGAATCTGATGG
CGCCCATAGTGAGGCCATTGGATGTCCTGTCGAGTGCCTGGGAGGAGATC
ACGAAGGAGGAGGTGGTGGGAAGCAGTACGGCGTGTATTGCCACTCTGGA
CATGGAGCTGAATCAATTAAGCTTCTGTAATGTGGGCGATAATGGGATCA
TTATTATGAGACATATCGACTCAGACGTTGCGGGCTATATGCGTGATAAA
ACCACGCCGAGACCTCTCAGGACGAATGATTTTAGGATTGCCTTTGTCTC
GCGCCAACAATTGCGGAGTTTTAATTTGCCGTATCAACTGGGTCACACCA
ATACACAGTCGGAACATTGCTTTGACACTCCCTGCGATGCGGATAATTCT
TCGATTCCCGTCATGCGTGGAGATGTGATCATCATGGGCACGGATGGTTT
GTTTGACAACGTCGAGCTGGATGAAATCTGTTCAATTGCCTTGGCGTGGG
AACAGAAATGGTTCGCAAACGGCGCATATTCTTCGGGACTACGTGCAGCG
GATTTCCCCGAGGAAAGCGTGCAGGAGCTGGCGATGACGTTGTGTAAACG
AGCGAGGGAGTTGAGTTTGGACCAGAAGAGGGATAGTCCCTTTGCAATTC
TGGCGAAAGAGAATGACATTATGTGGGGGGGGGGGATGCCAGACGACTGT
ACAATTGTGGCGATGCGGGTGGTGAAGGTGTAAAAGGCCCATCCCTCTCT
CCCTCTCTCTCCCTCGCTTTTTTCCTTCCTGACCTGTTCTGCTTGTTGGA
CGATTGTATCATTGTGGCCACGGGCGTGGCAAGGAGAGAGGAAGGGAAGG
AGGGAAGGAGGGAATGTGGTTGTGGGGATGTAGGTAGGTTTCGTTTCTCT
CATATTCAATTTGCTTTGGAGGCATTGAAGGCGGCATCTAGCGGTCACAG
CTTTTCTTATCTTGCTTCCATTGGGGAAAGAAAAGTGGACAAAATTAGGT
GAGAAAGATCGCACTCATTATATGAAAAAAATAAAGATTTTTTTAAAGAG
TAGAGAAGTGTGAATGTGTTTGTTTTAAAATGTGAAGAGGCACACGATCC
AGCAACTTCCTCGCAACATTTCGCTTATATGCGACGAGTGGATAGGAAGA
GACGGAAGGGTGTAAACCAAAGAATCAACAACAGACTGTATGCTTAGAA

Coding sequence (CDS) from alignment at scaffold_8:529224..531622-

>mRNA_3972 ID=mRNA_3972|Name=jgi.p|Nanoce1779_2|585994|organism=Nannochloropsis oceanica|type=CDS|length=1887bp|location=Sequence derived from alignment at scaffold_8:529224..531622- (Nannochloropsis oceanica)
ATGAACCGTACCGGTCCGGCCACGACCTTGATACGGACGGCGGCTGCAGC
AGGGGCACGTCGATGGGGGGCCTGTACAGCCACCCATAGCTTTCGCAGCA
GCAGCAGCAGCAGCAGCGCAACCGTCAGTATAATCAGTCGACGGCGACCT
AGAGCCATGCGGCCGCCGCCGCAGCAACAGCACCAAGCCTGCCCTGCATT
TAGCTCCCGGACATCTGAGCTGGAGCAGCAGGACCTGCACCCAGATGACG
ACATGAGGGGAGTTACCAGCAATAGCTGTGGAAGTGGAAGCGACAGTGAG
GATGACAGCTCGGCCCTATTCAAAACACGGTCGCGGAGCAAGAAATCGGA
CCGTCCAAACCACAACAGCAAGATTACTGCGGCGCAAATTGTGAAGCAAC
GGCAGCGCAAAGTGTGTCAAATTTACAGCGGGGCGACGTTGGAGGAAGCG
ATCAAGCTTTTAGCATCCAATAATTCCAGCAACTCTATGGTGTACGAAGA
GAAAGGTCCGGGCGGGCACAAAGAGGTCGTTGGTGTTTTCACTGCGCGGG
ACGTGATTAAGAAATTGAACAAGCATGCAGATAAGCTTGAGGCTCTGCAG
TCGACCGTCAGGCAAGTTATGACACCCATGTCGCGCGTCATCTTCTGCTC
TCCCGACGACACCGTTGAGAAAATTCAATATATTATGGTGGAGTTAAAGA
TACGAACGTTGCCTGTGGTAAAGGATGGCGTGATTCACGGCATTATCACT
TTGGGGGATGTGATCAATCACTATTATTCGTCAGAGGAGATAGGGGGTAA
GAAAGCTTTCATCAAGGGAGTGGTGGGGAGGTTGGGTCTGCCGACAGGCA
CAAGGGTCGCCTCGCATGTCGTTAAGGAGGGGGTGAAGAGAAGTATCAAG
TGGAAGGTGGGCATGGCAGCGTTGCCTCACCCGTTCAAGAGGCCGGATGG
TGTGGCGCCGAATTTGAGGATGCATGGTCCGATTGAATATGCAACGGACT
TGGAGCTGTCGGAGGATGCGTCATTTATTCTTACTTTGCCTTGGTTGCAT
GAGCATGGGGACGAGGCGACGTATGTGGGAATTGCGGATGGGGTGGGGTC
TTGGAGGGAACACGGGGTGGATCCGAGGGAGTACTCGCACCGGTTGATGA
AATTGTCGGAGGAGTTTATCCGAAGTATGGCGCCCAAGGCACCGAATCTG
ATGGCGCCCATAGTGAGGCCATTGGATGTCCTGTCGAGTGCCTGGGAGGA
GATCACGAAGGAGGAGGTGGTGGGAAGCAGTACGGCGTGTATTGCCACTC
TGGACATGGAGCTGAATCAATTAAGCTTCTGTAATGTGGGCGATAATGGG
ATCATTATTATGAGACATATCGACTCAGACGTTGCGGGCTATATGCGTGA
TAAAACCACGCCGAGACCTCTCAGGACGAATGATTTTAGGATTGCCTTTG
TCTCGCGCCAACAATTGCGGAGTTTTAATTTGCCGTATCAACTGGGTCAC
ACCAATACACAGTCGGAACATTGCTTTGACACTCCCTGCGATGCGGATAA
TTCTTCGATTCCCGTCATGCGTGGAGATGTGATCATCATGGGCACGGATG
GTTTGTTTGACAACGTCGAGCTGGATGAAATCTGTTCAATTGCCTTGGCG
TGGGAACAGAAATGGTTCGCAAACGGCGCATATTCTTCGGGACTACGTGC
AGCGGATTTCCCCGAGGAAAGCGTGCAGGAGCTGGCGATGACGTTGTGTA
AACGAGCGAGGGAGTTGAGTTTGGACCAGAAGAGGGATAGTCCCTTTGCA
ATTCTGGCGAAAGAGAATGACATTATGTGGGGGGGGGGGATGCCAGACGA
CTGTACAATTGTGGCGATGCGGGTGGTGAAGGTGTAA

Synonyms

Publications