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Properties
| Property Name | Value |
|---|
| TranscriptId | 586072 |
| Track | FilteredModels2 |
| ProteinId | 585986 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:524193..525382 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3969 ID=mRNA_3969|Name=jgi.p|Nanoce1779_2|585986|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
ACAGGCTTCGTCCCCAACCGTGAGAATGAAGACGCTGTGCACCACAGTCC
TTCTTCTGACCATAGCGGCCGAGCTACTGCCGAGCTCCAAGGCCTTTAAG
TTTCCCGTGGGTGCACGCCTGATGGGGATGCCATCGTCCTTGCGCTTGAC
CAGTGCTCGCCGCACTCCTTCCACGACTACTTTGCCCTCTTTCTTCCCCA
AAACGAAGGCCCTGCATGCGTCCGACGCCGCCGTGGCGCCGTCCGACGAT
GCGGGTATCGGTCAGGTATGGATTGAACCTGCCTTTCACAACAAGCTGAG
CGTGCGTATCCTGGCTGTGCTTGCCGGCGTGGGTTTTGCCATGAAATCTT
CGGGCGTTGTGGTGCCCAAGCTTGCCGCCACGTACGTGCATCTGATGATG
TATGGGGCGGGTTTCGGGAGCCTCATGTACACGACGTTCGTGCTAGGCCT
GGTCATGTTCAAGAATTTACCACGACAGACCTTTGGGAGGTTGCAAAGCA
AGCTTTTCCCCATCTACTTCGCCTGGTCCAGCTTCACCCTTGCCATGCAG
CTTCTCACGGGCTCAGTCATGGGATTACCTGTCAAGGCAATGCAATGGTT
GGGTGCTTCCCTCGCCACTTCATTGATTAACTCTTTGTTTCTGGAACCGG
CAGCTACGAAGGTAATGTTTGAGAGGTACGCTTTGGAGAGGCAGAATAAA
AAGGAAGCTCCTGAGTACAAGGATCTGGCCAAGAAATTCAATGGATTGCA
TGGTATGTCATCGCTGGTGAATCTGGTGGCCGTTGTGGGTGGTTTCGTGC
ATGCCTATTACTTGGCTTTGTTGTTCGTTTAGGTGTCGAGGGACCAAAAA
CGATGAGAAGGAGGGATCATCTCGTTTGACGGAGGGGCACACACCGCCAA
GAAGAATTCTTCATAAAAAGAAAAGAGAGGACATAAGAAGAACGCAAACT
CCGCAGCAACACTGTCGTAGG back to topprotein sequence of jgi.p|Nanoce1779_2|585986 >mRNA_3969-protein ID=mRNA_3969-protein|Name=jgi.p|Nanoce1779_2|585986|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MKTLCTTVLLLTIAAELLPSSKAFKFPVGARLMGMPSSLRLTSARRTPST
TTLPSFFPKTKALHASDAAVAPSDDAGIGQVWIEPAFHNKLSVRILAVLA
GVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPR
QTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGLPVKAMQWLGASLATSL
INSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNL
VAVVGGFVHAYYLALLFV* back to topmRNA from alignment at scaffold_8:524193..525382+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3969 ID=mRNA_3969|Name=jgi.p|Nanoce1779_2|585986|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp|location=Sequence derived from alignment at scaffold_8:524193..525382+ (Nannochloropsis oceanica)
ACAGGCTTCGTCCCCAACCGTGAGAATGAAGACGCTGTGCACCACAGTCC
TTCTTCTGACCATAGCGGCCGAGCTACTGCCGAGCTCCAAGGCCTTTAAG
TTTCCCGTGGGTGCACGCCTGATGGGGATGCCATCGTCCTTGCGCTTGAC
CAGTGCTCGCCGCACTCCTTCCACGACTACTTTGCCCTCTTTCTTCCCCA
AAACGAAGGCCCTGCATGCGTCCGACGCCGCCGTGGCGCCGTCCGACGAT
GCGGGTATCGGTCAGGTATGGATTGAACCTGCCTTTCACAACAAGCTGAG
CGTGCGTATCCTGGCTGTGCTTGCCGGCGTGGGTTTTGCCATGAAATCTT
CGGGCGTTGTGGTGCCCAAGCTTGCCGCCACGTACGTGCATCTGATGATG
TATGGGGCGGGTTTCGGGAGCCTCATGTACACGACGTTCGTGCTAGGCCT
GGTCATGTTCAAGAATTTACCACGACAGACCTTTGGGAGGTTGCAAAGCA
AGGTGCGTGGGTGTGAGGATGCGGGGATGTATGGTTGATTCCAGCCTGGG
GGTGTTTTGTGGGATGTGCTTTTGATGGCTGATTTCCATGTCTTTGGGGG
AGAACGCGTAGTGTCTGCTTGTTTTATACGTATCCTTTGAAACAGGCATG
CCCGACAGAGAACCACTCTGTCCTCACACTCCCTCACTTCTCTCCTTCCT
CTTCCTCCCTGCCTTTCTCAGCTTTTCCCCATCTACTTCGCCTGGTCCAG
CTTCACCCTTGCCATGCAGCTTCTCACGGGCTCAGTCATGGGATTACCTG
TCAAGGCAATGCAATGGTTGGGTGCTTCCCTCGCCACTTCATTGATTAAC
TCTTTGTTTCTGGAACCGGCAGCTACGAAGGTAATGTTTGAGAGGTACGC
TTTGGAGAGGCAGAATAAAAAGGAAGCTCCTGAGTACAAGGATCTGGCCA
AGAAATTCAATGGATTGCATGGTATGTCATCGCTGGTGAATCTGGTGGCC
GTTGTGGGTGGTTTCGTGCATGCCTATTACTTGGCTTTGTTGTTCGTTTA
GGTGTCGAGGGACCAAAAACGATGAGAAGGAGGGATCATCTCGTTTGACG
GAGGGGCACACACCGCCAAGAAGAATTCTTCATAAAAAGAAAAGAGAGGA
CATAAGAAGAACGCAAACTCCGCAGCAACACTGTCGTAGG back to topCoding sequence (CDS) from alignment at scaffold_8:524193..525382+ >mRNA_3969 ID=mRNA_3969|Name=jgi.p|Nanoce1779_2|585986|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_8:524193..525382+ (Nannochloropsis oceanica)
ATGAAGACGCTGTGCACCACAGTCCTTCTTCTGACCATAGCGGCCGAGCT
ACTGCCGAGCTCCAAGGCCTTTAAGTTTCCCGTGGGTGCACGCCTGATGG
GGATGCCATCGTCCTTGCGCTTGACCAGTGCTCGCCGCACTCCTTCCACG
ACTACTTTGCCCTCTTTCTTCCCCAAAACGAAGGCCCTGCATGCGTCCGA
CGCCGCCGTGGCGCCGTCCGACGATGCGGGTATCGGTCAGGTATGGATTG
AACCTGCCTTTCACAACAAGCTGAGCGTGCGTATCCTGGCTGTGCTTGCC
GGCGTGGGTTTTGCCATGAAATCTTCGGGCGTTGTGGTGCCCAAGCTTGC
CGCCACGTACGTGCATCTGATGATGTATGGGGCGGGTTTCGGGAGCCTCA
TGTACACGACGTTCGTGCTAGGCCTGGTCATGTTCAAGAATTTACCACGA
CAGACCTTTGGGAGGTTGCAAAGCAAGCTTTTCCCCATCTACTTCGCCTG
GTCCAGCTTCACCCTTGCCATGCAGCTTCTCACGGGCTCAGTCATGGGAT
TACCTGTCAAGGCAATGCAATGGTTGGGTGCTTCCCTCGCCACTTCATTG
ATTAACTCTTTGTTTCTGGAACCGGCAGCTACGAAGGTAATGTTTGAGAG
GTACGCTTTGGAGAGGCAGAATAAAAAGGAAGCTCCTGAGTACAAGGATC
TGGCCAAGAAATTCAATGGATTGCATGGTATGTCATCGCTGGTGAATCTG
GTGGCCGTTGTGGGTGGTTTCGTGCATGCCTATTACTTGGCTTTGTTGTT
CGTTTAGATGAAGACGCTGTGCACCACAGTCCTTCTTCTGACCATAGCGG
CCGAGCTACTGCCGAGCTCCAAGGCCTTTAAGTTTCCCGTGGGTGCACGC
CTGATGGGGATGCCATCGTCCTTGCGCTTGACCAGTGCTCGCCGCACTCC
TTCCACGACTACTTTGCCCTCTTTCTTCCCCAAAACGAAGGCCCTGCATG
CGTCCGACGCCGCCGTGGCGCCGTCCGACGATGCGGGTATCGGTCAGGTA
TGGATTGAACCTGCCTTTCACAACAAGCTGAGCGTGCGTATCCTGGCTGT
GCTTGCCGGCGTGGGTTTTGCCATGAAATCTTCGGGCGTTGTGGTGCCCA
AGCTTGCCGCCACGTACGTGCATCTGATGATGTATGGGGCGGGTTTCGGG
AGCCTCATGTACACGACGTTCGTGCTAGGCCTGGTCATGTTCAAGAATTT
ACCACGACAGACCTTTGGGAGGTTGCAAAGCAAGCTTTTCCCCATCTACT
TCGCCTGGTCCAGCTTCACCCTTGCCATGCAGCTTCTCACGGGCTCAGTC
ATGGGATTACCTGTCAAGGCAATGCAATGGTTGGGTGCTTCCCTCGCCAC
TTCATTGATTAACTCTTTGTTTCTGGAACCGGCAGCTACGAAGGTAATGT
TTGAGAGGTACGCTTTGGAGAGGCAGAATAAAAAGGAAGCTCCTGAGTAC
AAGGATCTGGCCAAGAAATTCAATGGATTGCATGGTATGTCATCGCTGGT
GAATCTGGTGGCCGTTGTGGGTGGTTTCGTGCATGCCTATTACTTGGCTT
TGTTGTTCGTTTAG back to top
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