jgi.p|Nanoce1779_2|665473, mRNA_3967 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|665473
Unique NamemRNA_3967
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length901
Alignment locationscaffold_8:521626..522526 -

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Properties
Property NameValue
TranscriptId665559
TrackFilteredModels2
ProteinId665473
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:521626..522526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665473gene_3967Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665473mRNA_3967-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3967CDS_3967Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3967 ID=mRNA_3967|Name=jgi.p|Nanoce1779_2|665473|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ATGCAGAAAAACTCGTTCGAGCAACTTTGTATCAACGCTGCTAATGAAGA
GTTGCAGCAGCAGTCCAATCAGTTTGTCTTTCGGCTGGAGCAGGAGGAGT
ATGAGCGAGAGGATATCTCCTGGAACTTTGTATCTTTTTCTGATAACCAA
GAATGTCTGGATCTGATCGAGAAGAGGGGGACGGTGGTCTGGGCGGTATT
AGACGAGCAATGCGTCGTTCGTACCAAAGCCCCGGATACATCCTTTGCAC
ATCGGCTCTATGAGGTGAGTAAGAACCATCCACGCTTCACTGCCACTTCA
CGCGATCATGTGGACTGTCGCTTTCGGGTACGTCATTATGCAGGGGAGGT
GGTGTACGACACGGGTGGTTTCCTTGAGAAGAACAAGGACCAGCTGTATC
AAGAAATAGTAGATTTGCTGAGGTCATCTCGATGTGCATTGGTGCAGAGC
TTGTCTTCCGATATCGAGGTCGCCAAGTCCACTACTCGATATACCAGCAA
CAACAGTCTTGACTTCTTTTCCTCCTCCACTGGTGTTGATGCCACGAAGC
GTCGTAGCGCCGTTGTACGCCCGACTGTCGCCTCTCAATTCAAGGGGCAA
CTCGCCTTGTTGCTGCAGCGTGTTTACTCCACCCGCCCTCATTACGTCCG
TTGCCTTGAACCTAATGATTGTAATATTCCCTCTGCTTTCGATGAGCCAT
GAGTGATCGAGCAGTTGCGCTGTGGGGGGGTGTTGGAAGCCGTGCGTGTC
TCTCGGGCAGGCTACCCAACACGATTGGTCCATGCGCAAGTCAATCAGCG
ATATCGTCCTCTTGCTCTAGATTGCTACAAAAAAGTCCATCGTAAGGCTA
AGGCGGCTGCGGCTACTGCTGCGTCATAATTGAACGGTGGGAAAGGGATG
G
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protein sequence of jgi.p|Nanoce1779_2|665473

>mRNA_3967-protein ID=mRNA_3967-protein|Name=jgi.p|Nanoce1779_2|665473|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MQKNSFEQLCINAANEELQQQSNQFVFRLEQEEYEREDISWNFVSFSDNQ
ECLDLIEKRGTVVWAVLDEQCVVRTKAPDTSFAHRLYEVSKNHPRFTATS
RDHVDCRFRVRHYAGEVVYDTGGFLEKNKDQLYQEIVDLLRSSRCALVQS
LSSDIEVAKSTTRYTSNNSLDFFSSSTGVDATKRRSAVVRPTVASQFKGQ
LALLLQRVYSTRPHYVRCLEPNDCNIPSAFDEP*
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mRNA from alignment at scaffold_8:521626..522526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3967 ID=mRNA_3967|Name=jgi.p|Nanoce1779_2|665473|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at scaffold_8:521626..522526- (Nannochloropsis oceanica)
ATGCAGAAAAACTCGTTCGAGCAACTTTGTATCAACGCTGCTAATGAAGA
GTTGCAGCAGCAGTCCAATCAGTTTGTCTTTCGGCTGGAGCAGGAGGAGT
ATGAGCGAGAGGATATCTCCTGGAACTTTGTATCTTTTTCTGATAACCAA
GAATGTCTGGATCTGATCGAGAAGAGGGGGACGGTGGTCTGGGCGGTATT
AGACGAGCAATGCGTCGTTCGTACCAAAGCCCCGGATACATCCTTTGCAC
ATCGGCTCTATGAGGTGAGTAAGAACCATCCACGCTTCACTGCCACTTCA
CGCGATCATGTGGACTGTCGCTTTCGGGTACGTCATTATGCAGGGGAGGT
GGTGTACGACACGGGTGGTTTCCTTGAGAAGAACAAGGACCAGCTGTATC
AAGAAATAGTAGATTTGCTGAGGTCATCTCGATGTGCATTGGTGCAGAGC
TTGTCTTCCGATATCGAGGTCGCCAAGTCCACTACTCGATATACCAGCAA
CAACAGTCTTGACTTCTTTTCCTCCTCCACTGGTGTTGATGCCACGAAGC
GTCGTAGCGCCGTTGTACGCCCGACTGTCGCCTCTCAATTCAAGGGGCAA
CTCGCCTTGTTGCTGCAGCGTGTTTACTCCACCCGCCCTCATTACGTCCG
TTGCCTTGAACCTAATGATTGTAATATTCCCTCTGCTTTCGATGAGCCAT
GAGTGATCGAGCAGTTGCGCTGTGGGGGGGTGTTGGAAGCCGTGCGTGTC
TCTCGGGCAGGCTACCCAACACGATTGGTCCATGCGCAAGTCAATCAGCG
ATATCGTCCTCTTGCTCTAGATTGCTACAAAAAAGTCCATCGTAAGGCTA
AGGCGGCTGCGGCTACTGCTGCGTCATAATTGAACGGTGGGAAAGGGATG
G
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Coding sequence (CDS) from alignment at scaffold_8:521626..522526-

>mRNA_3967 ID=mRNA_3967|Name=jgi.p|Nanoce1779_2|665473|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_8:521626..522526- (Nannochloropsis oceanica)
ATGCAGAAAAACTCGTTCGAGCAACTTTGTATCAACGCTGCTAATGAAGA
GTTGCAGCAGCAGTCCAATCAGTTTGTCTTTCGGCTGGAGCAGGAGGAGT
ATGAGCGAGAGGATATCTCCTGGAACTTTGTATCTTTTTCTGATAACCAA
GAATGTCTGGATCTGATCGAGAAGAGGGGGACGGTGGTCTGGGCGGTATT
AGACGAGCAATGCGTCGTTCGTACCAAAGCCCCGGATACATCCTTTGCAC
ATCGGCTCTATGAGGTGAGTAAGAACCATCCACGCTTCACTGCCACTTCA
CGCGATCATGTGGACTGTCGCTTTCGGGTACGTCATTATGCAGGGGAGGT
GGTGTACGACACGGGTGGTTTCCTTGAGAAGAACAAGGACCAGCTGTATC
AAGAAATAGTAGATTTGCTGAGGTCATCTCGATGTGCATTGGTGCAGAGC
TTGTCTTCCGATATCGAGGTCGCCAAGTCCACTACTCGATATACCAGCAA
CAACAGTCTTGACTTCTTTTCCTCCTCCACTGGTGTTGATGCCACGAAGC
GTCGTAGCGCCGTTGTACGCCCGACTGTCGCCTCTCAATTCAAGGGGCAA
CTCGCCTTGTTGCTGCAGCGTGTTTACTCCACCCGCCCTCATTACGTCCG
TTGCCTTGAACCTAATGATTGTAATATTCCCTCTGCTTTCGATGAGCCAT
GA
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Synonyms
Publications