jgi.p|Nanoce1779_2|670186, mRNA_3965 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670186
Unique Name	mRNA_3965
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2580
Alignment location	scaffold_8:518837..521416 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670272
Track	FilteredModels2
ProteinId	670186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:518837..521416 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670186	gene_3965	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670186	mRNA_3965-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3965	CDS_3965	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:518837..521416-
coding sequence from alignment at scaffold_8:518837..521416-

mRNA sequence

>mRNA_3965 ID=mRNA_3965|Name=jgi.p|Nanoce1779_2|670186|organism=Nannochloropsis oceanica|type=mRNA|length=2580bp
CAAAAAACAATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGG
GAAGGCCAAACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCC
AGAAGCGGTGACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCC
TCCCTTCCTTCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCC
GCCCTCCGATCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATAC
CTCCTTGGACCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAAT
CCGATGAGCTCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATA
TCAGTACGAGAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCC
TTTACACCTGGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGC
TCTCTTACGGCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTC
CATCTGAGCAGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGC
CGACCCTTCCATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAG
CCATCCGACGTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCT
CGTCACCGGCGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCT
CCATCTCGCCTGAGGCGTCGGTCTACTCGATGCTGTCGTCCTACTCCTTG
ACTACGAGGCGCATAAAGAAGCCATGGATAAGGAAGGGCTGCGCCCGCTC
CATGTCATATATTCGTCGATCGATCAGCTCGCAACGGGACCTGACATCGT
CAAGCACCTTTATGGACGCAGGCGTGGATGGGGCAGGACGCACGTCGCAG
GGAAGACACCATTACATCTATTATGCGAGAACAAGAAACGGTTTGAGTCT
TTTTCGGGGGAGGTGTGTGAGATGGCAAGAATGTTGCTGCGGAAGAGAGG
AGTTTCAGTTGGTATGGTAGAAAAGGACGGAACGACTCCATTGATGTTGA
CAACTCGTAATGAGTTGTGGGGGTTGTGCGACCTACTGACGGAGTGGGGG
GCGTTGAATGTTAACAAGAAATTGTTACACGCTTGACGAAAGGAGCAAGA
GCATGAGCGCGAGAAGGGTGGGGATGGAGGGAGGATAGGAGAAGAGAGAA
GTGTGAAGGACAAGAAAGGGATGGAGGCAGGGGGGTCAAAAGAAGATATG
GCGACGGAAGAAAAGGAGAAATTAATCAAGGAGAACAAGACCGAAAAGAC
GACGAAGAAGAAGAAGTCGCTTGTGGTGGTAGCTGATGAGGAGATGCAGG
TGAAGGAGGGCAACGGTGGTGCTGGTATCAGAGCAGACTTTATCGTCATG
GCGGCGGCCGAGGCTAAAGCACAGAGGGAGGGATCAGAGGTCACGACCTG
TGACAGGAAAGGGCGGGGGGAGAAGGCGGTCGCGACGAAAGAGAGGCGGA
GGAATCAGAACAACAAGAACAGAAGGGAAAAGAAGAAGGCGGCGGCGGAA
GCGGAAGCATCAGCGGTGGGGATGGAGAGAATTTTCTCAGAGATCCAGGT
TGATGCCGCTGTAATACCGTCGACTATGGCCGCTGTAATACCGTCGACTA
TGGAGATGAAAGTAGAAGAAATAATGATGGTGAAGGAGGCTGTCGTGTCG
CCCGCTCTCATTGGGGAGAAAGAGGAGATAGATAAGGAGGACATTGTGGT
GTCAGTGTCCGTCAAACCGGCAGCAGTGGCGCCAGAAGAGAGGGGGGAGG
AGGACGAGGAAGTCGTGACTGCGGAAGGGGGGGACAAAGATGGAGCAGAG
AGGGCGTTGAACAGTGTCCCAAACGAGTCCATTTCTACGCCACTAAAGAA
ACAGCGCAAGAGGAAGAAAAATAAAAACGGCGGGGCGGCAGCAGCGACCA
AGACAACTAATGGCACATGTTAGGAGGAGAGGAGGACACAGCGGCAGCGA
CACCCACGGCGCCATACGAAGTGAATACCTTGATGGCCCTTCGAAACCAA
GGGTAGTAGCAGTAAAGATGGCGTTGACAGTCTTGAGCACATGAGTTCTT
CTTACTCTACGACTGAGTAACAATATAAAACGTGAGAAAAGAAAAGTGAA
CAGAAAAGCCATCCATGGTCCTCTGCTCATTGGCCGAGTCGGAAGGTGGT
GCAACAACAAATGAACAATATTGTGGTGATGCAAAATGCCATAGTAAAGG
TTGAAAGGAAGGATTGCCATATAAACGACAATAACTAGAAAAATTGACTG
TGGAAATCGACAAAAATCAGTAAATGTGCAAAGCAGCAGCAGCTATAGCA
GCAGTAGAAGCGGCGGCAGCGAGGCACAGAAGACATCAACCGCAAGGAAG
GAGACTGAAGAAGAACAGACCGAAGAGGATGGGGAAACGACGGTATACAC
CGACGCCAAGCGTCACCTAGACCAAACACCCTCACACGCATACATGCGCA
TGTGCAGGGGTGCAAATCAAAATCACAATGGGAAATTACTGTAATGTCGT
CATGGAGAACAACAACAACAACAATTGCAC

protein sequence of jgi.p|Nanoce1779_2|670186

>mRNA_3965-protein ID=mRNA_3965-protein|Name=jgi.p|Nanoce1779_2|670186|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MEAGGSKEDMATEEKEKLIKENKTEKTTKKKKSLVVVADEEMQVKEGNGG
AGIRADFIVMAAAEAKAQREGSEVTTCDRKGRGEKAVATKERRRNQNNKN
RREKKKAAAEAEASAVGMERIFSEIQVDAAVIPSTMAAVIPSTMEMKVEE
IMMVKEAVVSPALIGEKEEIDKEDIVVSVSVKPAAVAPEERGEEDEEVVT
AEGGDKDGAERALNSVPNESISTPLKKQRKRKKNKNGGAAAATKTTNGTC
*

mRNA from alignment at scaffold_8:518837..521416-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3965 ID=mRNA_3965|Name=jgi.p|Nanoce1779_2|670186|organism=Nannochloropsis oceanica|type=mRNA|length=2580bp|location=Sequence derived from alignment at scaffold_8:518837..521416- (Nannochloropsis oceanica)
CAAAAAACAATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGG
GAAGGCCAAACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCC
AGAAGCGGTGACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCC
TCCCTTCCTTCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCC
GCCCTCCGATCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATAC
CTCCTTGGACCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAAT
CCGATGAGCTCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATA
TCAGTACGAGAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCC
TTTACACCTGGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGC
TCTCTTACGGCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTC
CATCTGAGCAGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGC
CGACCCTTCCATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAG
CCATCCGACGTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCT
CGTCACCGGCGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCT
CCATCTCGCCTGAGGCGTCGGTCTACTCGATGCTGTCGTCCTACTCCTTG
ACTACGAGGCGCATAAAGAAGCCATGGATAAGGAAGGGCTGCGCCCGCTC
CATGTCATATATTCGTCGATCGATCAGCTCGCAACGGGACCTGACATCGT
CAAGCACCTTTATGGACGCAGGCGTGGATGGGGCAGGACGCACGTCGCAG
GGAAGACACCATTACATCTATTATGCGAGAACAAGAAACGGTTTGAGTCT
TTTTCGGGGGAGGTGTGTGAGATGGCAAGAATGTTGCTGCGGAAGAGAGG
AGTTTCAGTTGGTATGGTAGAAAAGGACGGAACGACTCCATTGATGTTGA
CAACTCGTAATGAGTTGTGGGGGTTGTGCGACCTACTGACGGAGTGGGGG
GCGTTGAATGTTAACAAGAAATTGTTACACGCTTGACGAAAGGAGCAAGA
GCATGAGCGCGAGAAGGGTGGGGATGGAGGGAGGATAGGAGAAGAGAGAA
GTGTGAAGGACAAGAAAGGGATGGAGGCAGGGGGGTCAAAAGAAGATATG
GCGACGGAAGAAAAGGAGAAATTAATCAAGGAGAACAAGACCGAAAAGAC
GACGAAGAAGAAGAAGTCGCTTGTGGTGGTAGCTGATGAGGAGATGCAGG
TGAAGGAGGGCAACGGTGGTGCTGGTATCAGAGCAGACTTTATCGTCATG
GCGGCGGCCGAGGCTAAAGCACAGAGGGAGGGATCAGAGGTCACGACCTG
TGACAGGAAAGGGCGGGGGGAGAAGGCGGTCGCGACGAAAGAGAGGCGGA
GGAATCAGAACAACAAGAACAGAAGGGAAAAGAAGAAGGCGGCGGCGGAA
GCGGAAGCATCAGCGGTGGGGATGGAGAGAATTTTCTCAGAGATCCAGGT
TGATGCCGCTGTAATACCGTCGACTATGGCCGCTGTAATACCGTCGACTA
TGGAGATGAAAGTAGAAGAAATAATGATGGTGAAGGAGGCTGTCGTGTCG
CCCGCTCTCATTGGGGAGAAAGAGGAGATAGATAAGGAGGACATTGTGGT
GTCAGTGTCCGTCAAACCGGCAGCAGTGGCGCCAGAAGAGAGGGGGGAGG
AGGACGAGGAAGTCGTGACTGCGGAAGGGGGGGACAAAGATGGAGCAGAG
AGGGCGTTGAACAGTGTCCCAAACGAGTCCATTTCTACGCCACTAAAGAA
ACAGCGCAAGAGGAAGAAAAATAAAAACGGCGGGGCGGCAGCAGCGACCA
AGACAACTAATGGCACATGTTAGGAGGAGAGGAGGACACAGCGGCAGCGA
CACCCACGGCGCCATACGAAGTGAATACCTTGATGGCCCTTCGAAACCAA
GGGTAGTAGCAGTAAAGATGGCGTTGACAGTCTTGAGCACATGAGTTCTT
CTTACTCTACGACTGAGTAACAATATAAAACGTGAGAAAAGAAAAGTGAA
CAGAAAAGCCATCCATGGTCCTCTGCTCATTGGCCGAGTCGGAAGGTGGT
GCAACAACAAATGAACAATATTGTGGTGATGCAAAATGCCATAGTAAAGG
TTGAAAGGAAGGATTGCCATATAAACGACAATAACTAGAAAAATTGACTG
TGGAAATCGACAAAAATCAGTAAATGTGCAAAGCAGCAGCAGCTATAGCA
GCAGTAGAAGCGGCGGCAGCGAGGCACAGAAGACATCAACCGCAAGGAAG
GAGACTGAAGAAGAACAGACCGAAGAGGATGGGGAAACGACGGTATACAC
CGACGCCAAGCGTCACCTAGACCAAACACCCTCACACGCATACATGCGCA
TGTGCAGGGGTGCAAATCAAAATCACAATGGGAAATTACTGTAATGTCGT
CATGGAGAACAACAACAACAACAATTGCAC

Coding sequence (CDS) from alignment at scaffold_8:518837..521416-

>mRNA_3965 ID=mRNA_3965|Name=jgi.p|Nanoce1779_2|670186|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_8:518837..521416- (Nannochloropsis oceanica)
ATGGAGGCAGGGGGGTCAAAAGAAGATATGGCGACGGAAGAAAAGGAGAA
ATTAATCAAGGAGAACAAGACCGAAAAGACGACGAAGAAGAAGAAGTCGC
TTGTGGTGGTAGCTGATGAGGAGATGCAGGTGAAGGAGGGCAACGGTGGT
GCTGGTATCAGAGCAGACTTTATCGTCATGGCGGCGGCCGAGGCTAAAGC
ACAGAGGGAGGGATCAGAGGTCACGACCTGTGACAGGAAAGGGCGGGGGG
AGAAGGCGGTCGCGACGAAAGAGAGGCGGAGGAATCAGAACAACAAGAAC
AGAAGGGAAAAGAAGAAGGCGGCGGCGGAAGCGGAAGCATCAGCGGTGGG
GATGGAGAGAATTTTCTCAGAGATCCAGGTTGATGCCGCTGTAATACCGT
CGACTATGGCCGCTGTAATACCGTCGACTATGGAGATGAAAGTAGAAGAA
ATAATGATGGTGAAGGAGGCTGTCGTGTCGCCCGCTCTCATTGGGGAGAA
AGAGGAGATAGATAAGGAGGACATTGTGGTGTCAGTGTCCGTCAAACCGG
CAGCAGTGGCGCCAGAAGAGAGGGGGGAGGAGGACGAGGAAGTCGTGACT
GCGGAAGGGGGGGACAAAGATGGAGCAGAGAGGGCGTTGAACAGTGTCCC
AAACGAGTCCATTTCTACGCCACTAAAGAAACAGCGCAAGAGGAAGAAAA
ATAAAAACGGCGGGGCGGCAGCAGCGACCAAGACAACTAATGGCACATGT
TAG

Synonyms

Publications