jgi.p|Nanoce1779_2|585979, mRNA_3963 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585979
Unique NamemRNA_3963
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length723
Alignment locationscaffold_8:515147..516423 -

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Properties
Property NameValue
TranscriptId586065
TrackFilteredModels2
ProteinId585979
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:515147..516423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585979gene_3963Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585979mRNA_3963-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3963CDS_3963Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3963 ID=mRNA_3963|Name=jgi.p|Nanoce1779_2|585979|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ACAGGAACAGGGAAAGATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTT
GTAAGGGCAAGAAGTGCAAGAAGCACACCGTCCACAAGGTCACGCAGTAC
AAGGCCGGCAAGGCCTCCAACTACGCGCAGGGCAAGCGGCGTTATGACCG
AAAGCAGCAAGGGTACGGCGGGCAGACCAAGCCTATATTGCACAAGAAGG
CCAAGACCACCAAGAAGGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAG
ACGAAGAAGCAGCTTGTCATCAAGCGCACCAAGCACTTCGAGCTGGGCGA
GAAGAAGAAGACCTCCGGTCACCAGTACTAAGCAGCTTTTCAGATAAAGT
GGGAGTGAGTAATGGTGTAAAGCGAGAGGAGGGTAAAAGGGAAGGGACGG
AGGCGGGTTGATTGTGTGGTGGGGATGGAAAATAGGTGTAGGAGGTGGAA
GGCGAAGACAGCAGAAGGAAAGGCATTGAAAGACTTGATAGCTGCCACTC
TAGCCGCTGGATGATCTCAACGCTTTTCGAGAGTTGAACTCTTGCCGTCC
CGTTTCTCGTCCTCCTGGGCGCATTCGTTTATCCACGCGCACAGAAGAAA
CAAAACAACAAAACAACATATTCAACTCCGACAAGGAAAAGGGAGATGTG
TTGCCCTGTGAATCTTTTGTCATGTTGATCGTGCTCTGAGGGCTACGAAA
ATTTTCAATGCATATGAACCCAC
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protein sequence of jgi.p|Nanoce1779_2|585979

>mRNA_3963-protein ID=mRNA_3963-protein|Name=jgi.p|Nanoce1779_2|585979|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGY
GGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTS
GHQY*
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mRNA from alignment at scaffold_8:515147..516423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3963 ID=mRNA_3963|Name=jgi.p|Nanoce1779_2|585979|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp|location=Sequence derived from alignment at scaffold_8:515147..516423- (Nannochloropsis oceanica)
ACAGGAACAGGGAAAGATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTT
GTAAGGGCAAGAAGTGCAAGAAGCACACCGTCCACAAGGTCACGCAGTAC
AAGGCCGGCAAGGCCTCCAACTACGCGCAGGTACGTAGTCATGCTTGATG
GAGGGAAGTGGAAAAGTATGAAGGGAAGGTGTTTGGGAAAGAAGTTGTGG
TTGAAATCGAGGACGATTGCTTCCGCATTTGGCATGGCGTCTATGAAGTA
GTAGTCCTGTTCTCGTCAACCGGAGCCTGCCTCAGTTGCGCACAGAACAA
AGCCGACCCGGTGGCAGAAGCCTCAGGGCATCTGAGGGAATAAGATTAAC
GTTACTGATCATGGGCGTCGATGCTGTCGGGACTGGCTGTACCCATAGTT
TTGCTCGAGAGGCGCGCCAATGTATTGCGCTTATCTTGGGTCTGTTTGCT
CGGTGACCTCACGGTGGGGAAGGAGAAGAGCATCAAGGTCGAAAGCGCAC
GAGCTGAAGATCTACGCAGTCGCTCCTGAAGTGGAAGTATAGCGCTTAGC
AAAGGCTGGGTGGATTTTTTTCTGTGTTGGTTTTGACTCGAATTGGCTGG
TGGTCCTGAGAATGAAGACGAACAAATAAAACTCATTACTTCCTTTTCTT
TTGCTCCCTCTCCCCATACCACTAAACCTAACAGGGCAAGCGGCGTTATG
ACCGAAAGCAGCAAGGGTACGGCGGGCAGACCAAGCCTATATTGCACAAG
AAGGCCAAGACCACCAAGAAGGTGACCCTGCGCCTCGAGTGCAAGGACTG
TAAGACGAAGAAGCAGCTTGTCATCAAGCGCACCAAGCACTTCGAGCTGG
GCGAGAAGAAGAAGACCTCCGGTCACCAGTACTAAGCAGCTTTTCAGATA
AAGTGGGAGTGAGTAATGGTGTAAAGCGAGAGGAGGGTAAAAGGGAAGGG
ACGGAGGCGGGTTGATTGTGTGGTGGGGATGGAAAATAGGTGTAGGAGGT
GGAAGGCGAAGACAGCAGAAGGAAAGGCATTGAAAGACTTGATAGCTGCC
ACTCTAGCCGCTGGATGATCTCAACGCTTTTCGAGAGTTGAACTCTTGCC
GTCCCGTTTCTCGTCCTCCTGGGCGCATTCGTTTATCCACGCGCACAGAA
GAAACAAAACAACAAAACAACATATTCAACTCCGACAAGGAAAAGGGAGA
TGTGTTGCCCTGTGAATCTTTTGTCATGTTGATCGTGCTCTGAGGGCTAC
GAAAATTTTCAATGCATATGAACCCAC
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Coding sequence (CDS) from alignment at scaffold_8:515147..516423-

>mRNA_3963 ID=mRNA_3963|Name=jgi.p|Nanoce1779_2|585979|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_8:515147..516423- (Nannochloropsis oceanica)
GGCAAGCGGCGTTATGACCGAAAGCAGCAAGGGTACGGCGGGCAGACCAA
GCCTATATTGCACAAGAAGGCCAAGACCACCAAGAAGGTGACCCTGCGCC
TCGAGTGCAAGGACTGTAAGACGAAGAAGCAGCTTGTCATCAAGCGCACC
AAGCACTTCGAGCTGGGCGAGAAGAAGAAGACCTCCGGTCACCAGTACTA
AATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTTGTAAGGGCAAGAAGT
GCAAGAAGCACACCGTCCACAAGGTCACGCAGTACAAGGCCGGCAAGGCC
TCCAACTACGCGCAGGGCAAGCGGCGTTATGACCGAAAGCAGCAAGGGTA
CGGCGGGCAGACCAAGCCTATATTGCACAAGAAGGCCAAGACCACCAAGA
AGGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAGACGAAGAAGCAGCTT
GTCATCAAGCGCACCAAGCACTTCGAGCTGGGCGAGAAGAAGAAGACCTC
CGGTCACCAGTACTAAATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTT
GTAAGGGCAAGAAGTGCAAGAAGCACACCGTCCACAAGGTCACGCAGTAC
AAGGCCGGCAAGGCCTCCAACTACGCGCAG
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Synonyms
Publications