jgi.p|Nanoce1779_2|665468, mRNA_3962 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|665468
Unique Name	mRNA_3962
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2894
Alignment location	scaffold_8:509806..512699 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	665554
Track	FilteredModels2
ProteinId	665468

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:509806..512699 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|665468	gene_3962	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|665468	mRNA_3962-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3962	CDS_3962	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:509806..512699-
coding sequence from alignment at scaffold_8:509806..512699-

mRNA sequence

>mRNA_3962 ID=mRNA_3962|Name=jgi.p|Nanoce1779_2|665468|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp
ATGGGCCTCCTCGACGGCCTCAAAAAGGCCATGACTGGCGCTGCCGTTGC
ATCAGGTGCCTTGGACACGTCTGCGAATGGGCCGCCAGCAGCAGAGAATG
CGGCTCTGATAAAGCAGTACGAGGCACGGGTCTCGCGCATCAATGCAATG
GAAGAAGCATTCGAGAAACTGACCGATGACGAATTGCGGGCCAAGACCGT
CGAGTTCCAGAAGAGAGTCAAGGAAGAGAAGGAGGATGTGACGGGTCCTT
TGTTGGAAGAAGCGTTCGCAGTGGTGCGTGAGGCGGCATGGCGGGTGTTG
CAGTTACGGCATTACGACGTGCAACTCATCGGGGGAATGGCCTTGAATGA
AGGTAGGCTCGCGGAGATGGCGACAGGGGAGGGAAAAACGCTGGTGGCCA
CGTTGCCGGCCTATCTGAATGGGCTGACGGGCCAGGGGGCTTTCATTGTG
ACGGCTAACGATTATTTGGCACGGAGAGATGCAGAGCTGATGGGGCAAGT
ACATCGGTTTTTGGGATTGTCGGTAGGATTAATTCAGACGGGAATGAATT
ATGTAGAGAGGAGGGAGGCATATGCATGTGATGTGACCTACGTGACGAAT
GTAGAGTTGGGATTTGATTATTTGAGGGATAACCTGGCGTTGACGAGGGA
AGAGACGGTGTTGAGATCCCGGCCGTTGGACAAGGCGTTTTGTTTGGTGG
ATGAAGCGGACTCAATTTTGATTGACGAGGCCCGAACACCCTTGATAATC
AGCAAGCAAATCAATGCCCCTCAGCCCAAGTACGGGGCAGCGAAGAAATT
GGTTGATTTTTTGAAGCAGGGCGTACATTATGAAGTGGATGAAAAGGCCC
AAAATGTTGTGTTGACAGACCAGGGAGTGAAGGACTGCGAGAAGGTCTTA
GGAAAGAGTTTGTTTGACTTGACCGACCCGTGGATGAGCTTTGTGACCAA
CGGATTGAAGGCGAAGGAGCTGTTGATAAGGGATAAAGATTACATTGTCC
GGGGGCAGGATATCGCGATTGTGGATCGGTTTTCGGGCCGGGTCTTAGAG
GGGAGGAAATATTCGGATGGCTTGCAGCAGAGCATTCAGACGAAGGAGGG
GCTTGTGTGCTCGAGCCAGAGTCAGGTGATTGCGACAATTACATATCAGA
GCTTGTTTCGCCTGTTTTATAAACTGGCAGGGATGACAGGGACGGCATTG
ACTGACTATAAGGATTTTGTGACCACATATAATCTGCCTGTGATTGCCAT
TCCGACTGCCCTGCCCAATGCTCGGAAAGACTACCCGGATGCCATATTCC
GCTCCAAGGAAGGAAAACTTCGGGCGTTGTTGCGTGAGGTCCGTCGGGCG
CATAAAACAGGACAGCCAATTTTGGTGGGAACCACCTCCGTAGAAACTAG
TGAGTTGATTGCCGATGCCTTGCAAGAATTGGATATACAGTGTCAAGTTC
TTAACGCCCGACCGGAAAACATTGAGAATGAATCACAGATTGTCGCACAA
GCTGGTCGCCTGGGCGCAGTCACCGTTGCTACCAATATGGCGGGGCGCGG
GACAGATATTTTACTGGGAGGAAACCCGGCGCTGATGGCGCGCATTAAGC
TGAAGCTGGAGCTAGCCAAGGGAGTGTTGGGCAGCACAAATGGGGCGGAA
GCCATGGACAATTTTTTTCCTTGTGAAGTCTCGCCGCCGGCAGCGTCGTT
GATTGATGTGGCGGTGGGATTAGCAAAGGAAAAGATTGGGGGGGATGGGA
TGAGTCTGTTTAAGATTGAGGAGATGATTGCAGTAGCGGCGGAGAACTCA
CCGGTGACCAACCCAGTGTTGCTGGCGTTGAGGGAGGCTTATGATGAGGT
GAAGAGGCAGTATCAGGAGGCCTTGAAAGGTGAGAAGGACGCAGTGAAAA
AATTGAATGGGTTGTATGTGCTAGGAACTGAAAGGCATGAGTCACGGAGG
ATTGATAATCAGTTGAGAGGGAGGGCGGGGAGGCAGGGGGATCAAGGGGG
GACGCGGTTTTTCTTGAGTTTAGAGGATGATGTGTTTCGGATCTTCGGGG
GTGAGAAAATGCAGGGAATTATGGATACTTTCAGGGTGGGGGAGGACTTG
CCGATTGAGAGTCCGACGGTGAGCGAGGCATTGGATAAAGTGCAGCAGCA
GGTGGAGTCATATTATTTCGATATTCGACAAAAATTATTGGCGTTTGATA
ATGTAATCAGTAAGCAACGCCAGGAGTTGTATGGGATTCGAGCGGCGATT
GTGGATCATGACGCGGAGCAGCTTCATGCAATGATGAGGGATTTTGTCCG
ACGCACGACAGAGGATATTGTGGAGGCAAATTTTGAGACAGAGAAACGAG
GTAAGATTGTGGAGAAAGTCAGGCAGTTTTTCCCGACCCTTGGCGCTGTG
GACGAGACGGAGTTGCTGAAGATGACCAAGCAGCAGACGTCAGCCTGTAT
GCACGAGGCGGTTGATAAGGCATTGGAGCGGAAAAAGTCTGATTTGGCGG
CACATAAGGCGGAACTTTACGCAGAAACGGTCCGTTACTTGACTCTGTTG
CAGATCGATAATTTGTGGGCGCAGCAGTTGGAGGCTTTGGAGCAACTGAA
GGAGATCTCGGTCTTGCAGCGGTTTAAGGGCTCAGATCCCATGGCTGAGT
ACGAGAAGCGAACGAGTGCTTTTTTTAGGGATTTGATCGGGAACATAAGG
CGTAACACAGTGTATTCTCTCTTTCAGTACCAACCCACCGGGGCGGCCGC
GGGAGGCGGTGGGGAGGTGGCAGCCAAAAAGTGAAAAAAACATGAGCGAG
TCAAGGAAAATGCGTGTGTCTGTGCATGATCCTGCTTGACTTAGGACGCA
TGTGATCTTGTTTGAAAAGAAAAATGAAAAAGAATACGTGAAGC

protein sequence of jgi.p|Nanoce1779_2|665468

>mRNA_3962-protein ID=mRNA_3962-protein|Name=jgi.p|Nanoce1779_2|665468|organism=Nannochloropsis oceanica|type=polypeptide|length=928bp
MGLLDGLKKAMTGAAVASGALDTSANGPPAAENAALIKQYEARVSRINAM
EEAFEKLTDDELRAKTVEFQKRVKEEKEDVTGPLLEEAFAVVREAAWRVL
QLRHYDVQLIGGMALNEGRLAEMATGEGKTLVATLPAYLNGLTGQGAFIV
TANDYLARRDAELMGQVHRFLGLSVGLIQTGMNYVERREAYACDVTYVTN
VELGFDYLRDNLALTREETVLRSRPLDKAFCLVDEADSILIDEARTPLII
SKQINAPQPKYGAAKKLVDFLKQGVHYEVDEKAQNVVLTDQGVKDCEKVL
GKSLFDLTDPWMSFVTNGLKAKELLIRDKDYIVRGQDIAIVDRFSGRVLE
GRKYSDGLQQSIQTKEGLVCSSQSQVIATITYQSLFRLFYKLAGMTGTAL
TDYKDFVTTYNLPVIAIPTALPNARKDYPDAIFRSKEGKLRALLREVRRA
HKTGQPILVGTTSVETSELIADALQELDIQCQVLNARPENIENESQIVAQ
AGRLGAVTVATNMAGRGTDILLGGNPALMARIKLKLELAKGVLGSTNGAE
AMDNFFPCEVSPPAASLIDVAVGLAKEKIGGDGMSLFKIEEMIAVAAENS
PVTNPVLLALREAYDEVKRQYQEALKGEKDAVKKLNGLYVLGTERHESRR
IDNQLRGRAGRQGDQGGTRFFLSLEDDVFRIFGGEKMQGIMDTFRVGEDL
PIESPTVSEALDKVQQQVESYYFDIRQKLLAFDNVISKQRQELYGIRAAI
VDHDAEQLHAMMRDFVRRTTEDIVEANFETEKRGKIVEKVRQFFPTLGAV
DETELLKMTKQQTSACMHEAVDKALERKKSDLAAHKAELYAETVRYLTLL
QIDNLWAQQLEALEQLKEISVLQRFKGSDPMAEYEKRTSAFFRDLIGNIR
RNTVYSLFQYQPTGAAAGGGGEVAAKK*

mRNA from alignment at scaffold_8:509806..512699-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3962 ID=mRNA_3962|Name=jgi.p|Nanoce1779_2|665468|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp|location=Sequence derived from alignment at scaffold_8:509806..512699- (Nannochloropsis oceanica)
ATGGGCCTCCTCGACGGCCTCAAAAAGGCCATGACTGGCGCTGCCGTTGC
ATCAGGTGCCTTGGACACGTCTGCGAATGGGCCGCCAGCAGCAGAGAATG
CGGCTCTGATAAAGCAGTACGAGGCACGGGTCTCGCGCATCAATGCAATG
GAAGAAGCATTCGAGAAACTGACCGATGACGAATTGCGGGCCAAGACCGT
CGAGTTCCAGAAGAGAGTCAAGGAAGAGAAGGAGGATGTGACGGGTCCTT
TGTTGGAAGAAGCGTTCGCAGTGGTGCGTGAGGCGGCATGGCGGGTGTTG
CAGTTACGGCATTACGACGTGCAACTCATCGGGGGAATGGCCTTGAATGA
AGGTAGGCTCGCGGAGATGGCGACAGGGGAGGGAAAAACGCTGGTGGCCA
CGTTGCCGGCCTATCTGAATGGGCTGACGGGCCAGGGGGCTTTCATTGTG
ACGGCTAACGATTATTTGGCACGGAGAGATGCAGAGCTGATGGGGCAAGT
ACATCGGTTTTTGGGATTGTCGGTAGGATTAATTCAGACGGGAATGAATT
ATGTAGAGAGGAGGGAGGCATATGCATGTGATGTGACCTACGTGACGAAT
GTAGAGTTGGGATTTGATTATTTGAGGGATAACCTGGCGTTGACGAGGGA
AGAGACGGTGTTGAGATCCCGGCCGTTGGACAAGGCGTTTTGTTTGGTGG
ATGAAGCGGACTCAATTTTGATTGACGAGGCCCGAACACCCTTGATAATC
AGCAAGCAAATCAATGCCCCTCAGCCCAAGTACGGGGCAGCGAAGAAATT
GGTTGATTTTTTGAAGCAGGGCGTACATTATGAAGTGGATGAAAAGGCCC
AAAATGTTGTGTTGACAGACCAGGGAGTGAAGGACTGCGAGAAGGTCTTA
GGAAAGAGTTTGTTTGACTTGACCGACCCGTGGATGAGCTTTGTGACCAA
CGGATTGAAGGCGAAGGAGCTGTTGATAAGGGATAAAGATTACATTGTCC
GGGGGCAGGATATCGCGATTGTGGATCGGTTTTCGGGCCGGGTCTTAGAG
GGGAGGAAATATTCGGATGGCTTGCAGCAGAGCATTCAGACGAAGGAGGG
GCTTGTGTGCTCGAGCCAGAGTCAGGTGATTGCGACAATTACATATCAGA
GCTTGTTTCGCCTGTTTTATAAACTGGCAGGGATGACAGGGACGGCATTG
ACTGACTATAAGGATTTTGTGACCACATATAATCTGCCTGTGATTGCCAT
TCCGACTGCCCTGCCCAATGCTCGGAAAGACTACCCGGATGCCATATTCC
GCTCCAAGGAAGGAAAACTTCGGGCGTTGTTGCGTGAGGTCCGTCGGGCG
CATAAAACAGGACAGCCAATTTTGGTGGGAACCACCTCCGTAGAAACTAG
TGAGTTGATTGCCGATGCCTTGCAAGAATTGGATATACAGTGTCAAGTTC
TTAACGCCCGACCGGAAAACATTGAGAATGAATCACAGATTGTCGCACAA
GCTGGTCGCCTGGGCGCAGTCACCGTTGCTACCAATATGGCGGGGCGCGG
GACAGATATTTTACTGGGAGGAAACCCGGCGCTGATGGCGCGCATTAAGC
TGAAGCTGGAGCTAGCCAAGGGAGTGTTGGGCAGCACAAATGGGGCGGAA
GCCATGGACAATTTTTTTCCTTGTGAAGTCTCGCCGCCGGCAGCGTCGTT
GATTGATGTGGCGGTGGGATTAGCAAAGGAAAAGATTGGGGGGGATGGGA
TGAGTCTGTTTAAGATTGAGGAGATGATTGCAGTAGCGGCGGAGAACTCA
CCGGTGACCAACCCAGTGTTGCTGGCGTTGAGGGAGGCTTATGATGAGGT
GAAGAGGCAGTATCAGGAGGCCTTGAAAGGTGAGAAGGACGCAGTGAAAA
AATTGAATGGGTTGTATGTGCTAGGAACTGAAAGGCATGAGTCACGGAGG
ATTGATAATCAGTTGAGAGGGAGGGCGGGGAGGCAGGGGGATCAAGGGGG
GACGCGGTTTTTCTTGAGTTTAGAGGATGATGTGTTTCGGATCTTCGGGG
GTGAGAAAATGCAGGGAATTATGGATACTTTCAGGGTGGGGGAGGACTTG
CCGATTGAGAGTCCGACGGTGAGCGAGGCATTGGATAAAGTGCAGCAGCA
GGTGGAGTCATATTATTTCGATATTCGACAAAAATTATTGGCGTTTGATA
ATGTAATCAGTAAGCAACGCCAGGAGTTGTATGGGATTCGAGCGGCGATT
GTGGATCATGACGCGGAGCAGCTTCATGCAATGATGAGGGATTTTGTCCG
ACGCACGACAGAGGATATTGTGGAGGCAAATTTTGAGACAGAGAAACGAG
GTAAGATTGTGGAGAAAGTCAGGCAGTTTTTCCCGACCCTTGGCGCTGTG
GACGAGACGGAGTTGCTGAAGATGACCAAGCAGCAGACGTCAGCCTGTAT
GCACGAGGCGGTTGATAAGGCATTGGAGCGGAAAAAGTCTGATTTGGCGG
CACATAAGGCGGAACTTTACGCAGAAACGGTCCGTTACTTGACTCTGTTG
CAGATCGATAATTTGTGGGCGCAGCAGTTGGAGGCTTTGGAGCAACTGAA
GGAGATCTCGGTCTTGCAGCGGTTTAAGGGCTCAGATCCCATGGCTGAGT
ACGAGAAGCGAACGAGTGCTTTTTTTAGGGATTTGATCGGGAACATAAGG
CGTAACACAGTGTATTCTCTCTTTCAGTACCAACCCACCGGGGCGGCCGC
GGGAGGCGGTGGGGAGGTGGCAGCCAAAAAGTGAAAAAAACATGAGCGAG
TCAAGGAAAATGCGTGTGTCTGTGCATGATCCTGCTTGACTTAGGACGCA
TGTGATCTTGTTTGAAAAGAAAAATGAAAAAGAATACGTGAAGC

Coding sequence (CDS) from alignment at scaffold_8:509806..512699-

>mRNA_3962 ID=mRNA_3962|Name=jgi.p|Nanoce1779_2|665468|organism=Nannochloropsis oceanica|type=CDS|length=2784bp|location=Sequence derived from alignment at scaffold_8:509806..512699- (Nannochloropsis oceanica)
ATGGGCCTCCTCGACGGCCTCAAAAAGGCCATGACTGGCGCTGCCGTTGC
ATCAGGTGCCTTGGACACGTCTGCGAATGGGCCGCCAGCAGCAGAGAATG
CGGCTCTGATAAAGCAGTACGAGGCACGGGTCTCGCGCATCAATGCAATG
GAAGAAGCATTCGAGAAACTGACCGATGACGAATTGCGGGCCAAGACCGT
CGAGTTCCAGAAGAGAGTCAAGGAAGAGAAGGAGGATGTGACGGGTCCTT
TGTTGGAAGAAGCGTTCGCAGTGGTGCGTGAGGCGGCATGGCGGGTGTTG
CAGTTACGGCATTACGACGTGCAACTCATCGGGGGAATGGCCTTGAATGA
AGGTAGGCTCGCGGAGATGGCGACAGGGGAGGGAAAAACGCTGGTGGCCA
CGTTGCCGGCCTATCTGAATGGGCTGACGGGCCAGGGGGCTTTCATTGTG
ACGGCTAACGATTATTTGGCACGGAGAGATGCAGAGCTGATGGGGCAAGT
ACATCGGTTTTTGGGATTGTCGGTAGGATTAATTCAGACGGGAATGAATT
ATGTAGAGAGGAGGGAGGCATATGCATGTGATGTGACCTACGTGACGAAT
GTAGAGTTGGGATTTGATTATTTGAGGGATAACCTGGCGTTGACGAGGGA
AGAGACGGTGTTGAGATCCCGGCCGTTGGACAAGGCGTTTTGTTTGGTGG
ATGAAGCGGACTCAATTTTGATTGACGAGGCCCGAACACCCTTGATAATC
AGCAAGCAAATCAATGCCCCTCAGCCCAAGTACGGGGCAGCGAAGAAATT
GGTTGATTTTTTGAAGCAGGGCGTACATTATGAAGTGGATGAAAAGGCCC
AAAATGTTGTGTTGACAGACCAGGGAGTGAAGGACTGCGAGAAGGTCTTA
GGAAAGAGTTTGTTTGACTTGACCGACCCGTGGATGAGCTTTGTGACCAA
CGGATTGAAGGCGAAGGAGCTGTTGATAAGGGATAAAGATTACATTGTCC
GGGGGCAGGATATCGCGATTGTGGATCGGTTTTCGGGCCGGGTCTTAGAG
GGGAGGAAATATTCGGATGGCTTGCAGCAGAGCATTCAGACGAAGGAGGG
GCTTGTGTGCTCGAGCCAGAGTCAGGTGATTGCGACAATTACATATCAGA
GCTTGTTTCGCCTGTTTTATAAACTGGCAGGGATGACAGGGACGGCATTG
ACTGACTATAAGGATTTTGTGACCACATATAATCTGCCTGTGATTGCCAT
TCCGACTGCCCTGCCCAATGCTCGGAAAGACTACCCGGATGCCATATTCC
GCTCCAAGGAAGGAAAACTTCGGGCGTTGTTGCGTGAGGTCCGTCGGGCG
CATAAAACAGGACAGCCAATTTTGGTGGGAACCACCTCCGTAGAAACTAG
TGAGTTGATTGCCGATGCCTTGCAAGAATTGGATATACAGTGTCAAGTTC
TTAACGCCCGACCGGAAAACATTGAGAATGAATCACAGATTGTCGCACAA
GCTGGTCGCCTGGGCGCAGTCACCGTTGCTACCAATATGGCGGGGCGCGG
GACAGATATTTTACTGGGAGGAAACCCGGCGCTGATGGCGCGCATTAAGC
TGAAGCTGGAGCTAGCCAAGGGAGTGTTGGGCAGCACAAATGGGGCGGAA
GCCATGGACAATTTTTTTCCTTGTGAAGTCTCGCCGCCGGCAGCGTCGTT
GATTGATGTGGCGGTGGGATTAGCAAAGGAAAAGATTGGGGGGGATGGGA
TGAGTCTGTTTAAGATTGAGGAGATGATTGCAGTAGCGGCGGAGAACTCA
CCGGTGACCAACCCAGTGTTGCTGGCGTTGAGGGAGGCTTATGATGAGGT
GAAGAGGCAGTATCAGGAGGCCTTGAAAGGTGAGAAGGACGCAGTGAAAA
AATTGAATGGGTTGTATGTGCTAGGAACTGAAAGGCATGAGTCACGGAGG
ATTGATAATCAGTTGAGAGGGAGGGCGGGGAGGCAGGGGGATCAAGGGGG
GACGCGGTTTTTCTTGAGTTTAGAGGATGATGTGTTTCGGATCTTCGGGG
GTGAGAAAATGCAGGGAATTATGGATACTTTCAGGGTGGGGGAGGACTTG
CCGATTGAGAGTCCGACGGTGAGCGAGGCATTGGATAAAGTGCAGCAGCA
GGTGGAGTCATATTATTTCGATATTCGACAAAAATTATTGGCGTTTGATA
ATGTAATCAGTAAGCAACGCCAGGAGTTGTATGGGATTCGAGCGGCGATT
GTGGATCATGACGCGGAGCAGCTTCATGCAATGATGAGGGATTTTGTCCG
ACGCACGACAGAGGATATTGTGGAGGCAAATTTTGAGACAGAGAAACGAG
GTAAGATTGTGGAGAAAGTCAGGCAGTTTTTCCCGACCCTTGGCGCTGTG
GACGAGACGGAGTTGCTGAAGATGACCAAGCAGCAGACGTCAGCCTGTAT
GCACGAGGCGGTTGATAAGGCATTGGAGCGGAAAAAGTCTGATTTGGCGG
CACATAAGGCGGAACTTTACGCAGAAACGGTCCGTTACTTGACTCTGTTG
CAGATCGATAATTTGTGGGCGCAGCAGTTGGAGGCTTTGGAGCAACTGAA
GGAGATCTCGGTCTTGCAGCGGTTTAAGGGCTCAGATCCCATGGCTGAGT
ACGAGAAGCGAACGAGTGCTTTTTTTAGGGATTTGATCGGGAACATAAGG
CGTAACACAGTGTATTCTCTCTTTCAGTACCAACCCACCGGGGCGGCCGC
GGGAGGCGGTGGGGAGGTGGCAGCCAAAAAGTGA

Synonyms

Publications