jgi.p|Nanoce1779_2|577213, mRNA_396 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577213
Unique NamemRNA_396
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1039
Alignment locationscaffold_3:984563..986227 +

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Properties
Property NameValue
TranscriptId577299
TrackFilteredModels2
ProteinId577213
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:984563..986227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577213gene_396Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577213mRNA_396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_396CDS_396Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_396 ID=mRNA_396|Name=jgi.p|Nanoce1779_2|577213|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp
ACAGGAAAGAAGAGAGCCTCCTCTCCTTACAACAGCAGCCATGGCCAAGT
CCAAGAACCACACGAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGC
ATCAAGAAGCCCAAGAACTACGTCTCCAAGTCCCTCAAGGGGATGGACCC
CAAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAACAAGGTCGTCA
AGGTAGTGAAGGCATAAAGATGGAGGCATGAGACGAAGCAAGATGATGGA
AGGAGGGAGATATGGAAGAAGAGAACGAAGAGGGATGGATGTTCTGTAAA
GTGACGACTTTCTCACAAGCCCCATTTTTCATGGCGTTTGTTTTGGTGGC
GGACCGGGAGGCCCTTTCCTATCATATTGGCTACAGCTGTCTTGCCTTCC
TTTTTCCCTTATGTACACCGAAAGGTGATTACAAGAGGAGAGAAGGAAAG
GGAAGCGATGAAGTTTATGACGATGGCGAGAAAGGACCCATACAAAGCAA
AATAAGCATCCCAGAGAAAAAAGGTTACATACGCAGACTCAAACGGAGCG
TTCTCTTATTATTTTGTGTGTGTTCGGCATCGGTCCTTATTTTGGTTGGC
TGGCCTCTGTTGCTCAAGCTCGGGAGGAAACTGCGAACATGAGATAAAAA
CCAACCACTCAGATGTGTGGATAAAAAATTCCAGCAACATGACAACAAGA
CAAATCTTCATGCAATTGCCTTTCCCTTCAGCCTTCATTCTTGATTCTTG
TTTTTTTCATCTTTTTCTTGGCCAAGATGTTTATTTATCCGCTGCGGCCA
AGCCGGACATGTCCCGGATACCACTTAGAAGCGACATGCGCTCTCGGACA
CGCTGTGCGGCGCCCTTTGCCCGCGGGCTTGTGCACGACGCCTGCTGCTG
CTGCTGTTGTTGCTGTGTGGGGTAATGGTAATGCCGTGATTGGCAGAGCC
CTCGTTTCGAGCGCAAAGCCCGGCGTAGATGCTTGAGCTCGGCCTCCTTC
CGATGAATGTCCTCAATCAATGCCCGCAAGTCCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|577213

>mRNA_396-protein ID=mRNA_396-protein|Name=jgi.p|Nanoce1779_2|577213|organism=Nannochloropsis oceanica|type=polypeptide|length=59bp
MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHN
KVVKVVKA*
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mRNA from alignment at scaffold_3:984563..986227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_396 ID=mRNA_396|Name=jgi.p|Nanoce1779_2|577213|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at scaffold_3:984563..986227+ (Nannochloropsis oceanica)
ACAGGAAAGAAGAGAGCCTCCTCTCCTTACAACAGCAGCCATGGCCAAGG
TACGTTTCGTGGAGGACGCGGAGGAGTAAAGGTTTCGAAAGGGGATGGAG
GGAGGGAGAGATGGCATCGAGGAGGGGGACGATGAGCAGATAAAGCGAAT
TGGAGCATGCTTACGGGATGTAGTGGATGCCGGAGGCAGAGGAAGAGTGT
TAGGCCATGCTATGGGTTTGCGGAAATGTGCCCGACAACCGTGGGCGGGA
GCTGGAGGCCGAGGTTCCTCTCGCGTGATGCTTGCATCGATCGAGCGGCC
CCCTCTAACCCTTAATTTGCCTTTTCCTCTCCGTCCCCCCTTCCTAATCC
CATCGCAGTCCAAGAACCACACGAACCGAAACCAGTCTTTTAAGGCGCAC
CGAAACGGCATCAAGAAGCCCAAGAACTACGTCTCCAAGTCCCTCAAGGG
GGTAAGTGTCGTCGGAATGATTTCTATTTTATTATTATTTTTATTTTCCA
TACATACTAGTGCGTGGATTGTGGTGCAAATTTGCTTGGATTGAGAGTCA
TAGCATACTTCTGTCTTTATTTTATCCGGTGGCTTTGGCAAGCTATGTTA
ATTAATTCACTTTTGACTGATCACTTCATGTGCTGTTTTTCGTAATCGTG
TATGCTGTAATGCTTCTACTCTTCTCTTCTCCTGCCTCTCCCCCTAAACT
CTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCC
TCACCTTCACATTTCCAGATGGACCCCAAGTACTTGCGCAACCAGCGTTT
CGCGAAGAAACACAACAAGGTCGTCAAGGTAGTGAAGGCATAAAGATGGA
GGCATGAGACGAAGCAAGATGATGGAAGGAGGGAGATATGGAAGAAGAGA
ACGAAGAGGGATGGATGTTCTGTAAAGTGACGACTTTCTCACAAGCCCCA
TTTTTCATGGCGTTTGTTTTGGTGGCGGACCGGGAGGCCCTTTCCTATCA
TATTGGCTACAGCTGTCTTGCCTTCCTTTTTCCCTTATGTACACCGAAAG
GTGATTACAAGAGGAGAGAAGGAAAGGGAAGCGATGAAGTTTATGACGAT
GGCGAGAAAGGACCCATACAAAGCAAAATAAGCATCCCAGAGAAAAAAGG
TTACATACGCAGACTCAAACGGAGCGTTCTCTTATTATTTTGTGTGTGTT
CGGCATCGGTCCTTATTTTGGTTGGCTGGCCTCTGTTGCTCAAGCTCGGG
AGGAAACTGCGAACATGAGATAAAAACCAACCACTCAGATGTGTGGATAA
AAAATTCCAGCAACATGACAACAAGACAAATCTTCATGCAATTGCCTTTC
CCTTCAGCCTTCATTCTTGATTCTTGTTTTTTTCATCTTTTTCTTGGCCA
AGATGTTTATTTATCCGCTGCGGCCAAGCCGGACATGTCCCGGATACCAC
TTAGAAGCGACATGCGCTCTCGGACACGCTGTGCGGCGCCCTTTGCCCGC
GGGCTTGTGCACGACGCCTGCTGCTGCTGCTGTTGTTGCTGTGTGGGGTA
ATGGTAATGCCGTGATTGGCAGAGCCCTCGTTTCGAGCGCAAAGCCCGGC
GTAGATGCTTGAGCTCGGCCTCCTTCCGATGAATGTCCTCAATCAATGCC
CGCAAGTCCTCCTCC
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Coding sequence (CDS) from alignment at scaffold_3:984563..986227+

>mRNA_396 ID=mRNA_396|Name=jgi.p|Nanoce1779_2|577213|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_3:984563..986227+ (Nannochloropsis oceanica)
ATGGCCAAGTCCAAGAACCACACGAACCGAAACCAGTCTTTTAAGGCGCA
CCGAAACGGCATCAAGAAGCCCAAGAACTACGTCTCCAAGTCCCTCAAGG
GGATGGACCCCAAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAAC
AAGGTCGTCAAGGTAGTGAAGGCATAAATGGCCAAGTCCAAGAACCACAC
GAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGCATCAAGAAGCCCA
AGAACTACGTCTCCAAGTCCCTCAAGGGGATGGACCCCAAGTACTTGCGC
AACCAGCGTTTCGCGAAGAAACACAACAAGGTCGTCAAGGTAGTGAAGGC
ATAAATGGCCAAGTCCAAGAACCACACGAACCGAAACCAGTCTTTTAAGG
CGCACCGAAACGGCATCAAGAAGCCCAAGAACTACGTCTCCAAGTCCCTC
AAGGGGATGGACCCCAAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACA
CAACAAGGTCGTCAAGGTAGTGAAGGCATAA
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Synonyms
Publications