jgi.p|Nanoce1779_2|585966, mRNA_3958 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585966
Unique NamemRNA_3958
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1678
Alignment locationscaffold_8:490670..492347 +

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Properties
Property NameValue
TranscriptId586052
TrackFilteredModels2
ProteinId585966
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:490670..492347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585966gene_3958Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585966mRNA_3958-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3958CDS_3958Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3958 ID=mRNA_3958|Name=jgi.p|Nanoce1779_2|585966|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp
GAAGAGCCGCGGGGAAGAGGATGCGCATATTTGCTTAATTACTTGAAGTG
GGGATGGAAGAGGGCGTTGCTCCTAGGTATGTAGAGTAGAGACGTGAGCG
TGTTTGGGAAAAGAAGTCGTGTGCTGCGACGCAAGCCGTCGTTGTGAGCA
TGGGCCATAAAGTGGTTGAGGGCTACATGGCTTGTTCGATCTCGACGCAC
CCCTACATGGCACACAGATACAACCACGACTGGGGCTCAGTGGATCTGGT
GGATAATGACCCTAGAGAGACATCAATGCGAATGGGAGGGCTCAATCAAG
AAGAGGAAGACAGGAAACGGAGGAGGGCTCTCTCATTCTGACAGTTGGGA
AAAGTTTCTTTGGGTCGTTTTTTGGTCCCCGCACGACGACGCTTTCTTTG
TTCTTCGTTGCCGCATGTTGATGATGGTATGCAATTTCGTCTTTGAATCA
GGAAAATAACTGATGAGCGCTTTACAGCTATTATGTCCAAGGCCCTAAGC
AAATATGCTGTGTGTCTCGAACCGGTCTGACCATTTGCGCAAGCAAGTGT
CTGGCCTTTCCTACATCATCTTGCCCCCTTCATCATCTTCCCGGCTTCCA
CCCTTCTTTTTTTCCCCAACTGGAAGCTTTCCGCTGTCAAGCTACCCATT
TGGAGTATGGAAACTCCTCGTATCTAGCGAATTCGATTTTTAATCGACGC
AAAACGATACTCGAACGGCACAAGCAAACAAAAGTGTGAAGCCAGCCAAG
AGGCATAGGATACGGACTTGACATGCAGACAAGAGTGATTCAGCGTGATC
CCGGCACAGAAATACACAGAAATCTCAACAGGGCCTCTCTCATCTGAAGT
GAGGGATGGTGCGTTCAGCAAAGGGCTGAAGCAAGGCTGAAGGAGGAGCG
AAATACAGGAGGCACGGAAACTACACGCTCGCCCCCCCTTGCTTCGCGGG
CATCGCGCCTGGTGGCCCTGCTTGCCCGTCGATGATGTAGAATGTTTGCG
GGGTCAAGTGTCGTGTATCCGACACAACCTTACGATAATTTTTGCAAATA
ATGTAAAAAATACGTAATCTATGAGGCTTTTGTTGCCATGCAGTCATTAG
AAGCCCCTAATTTGCTCCACGTGATCAAAAAGGATAACAATTGGCAACGC
TATCAAAATGTGGTGAGCAGCAGCTCATCATCTCCACGTGAGCATGGAAA
TCGAATCGAATCATGGCCACAATAACATTATTTGTAATTGCAGCTTACCT
GCATATACCGGGCATGTGTGGTTTAAATAAGAAGTGGAAAATTCCCCCCC
ATCTTTTCCACGACGCTCTTAGCGCCGCGCCGTCAACATTCTCACTCCTA
CGGCCTTTCAAGGAGAAGTACTACAGGAGCATACCCACCATCAATAATGT
GATATTTGATTCAGAAGCTTTGTTTCGTGACGGATGATGACCGACAAGTG
ATGATCAATCGATGCTTGATGGGCCACGCGTACTCGCGAGGTTAACGGGC
GTTAATTGCCTGGGCACACGCACACACCAATTCAAGACGTGTCCTTTCCA
CAAGCCAACGTTATCGATTGCATCCTTTGACCAAACAGAGAAACCACATA
ACGGGGGTCACGCGGCAATCAGAGCGACGGGTGTGACTGATATTTCGATC
TTCTTGCGACGCCGCTGAAAGATTCTCT
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protein sequence of jgi.p|Nanoce1779_2|585966

>mRNA_3958-protein ID=mRNA_3958-protein|Name=jgi.p|Nanoce1779_2|585966|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MATITLFVIAAYLHIPGMCGLNKKWKIPPHLFHDALSAAPSTFSLLRPFK
EKYYRSIPTINNVIFDSEALFRDG*
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mRNA from alignment at scaffold_8:490670..492347+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3958 ID=mRNA_3958|Name=jgi.p|Nanoce1779_2|585966|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at scaffold_8:490670..492347+ (Nannochloropsis oceanica)
GAAGAGCCGCGGGGAAGAGGATGCGCATATTTGCTTAATTACTTGAAGTG
GGGATGGAAGAGGGCGTTGCTCCTAGGTATGTAGAGTAGAGACGTGAGCG
TGTTTGGGAAAAGAAGTCGTGTGCTGCGACGCAAGCCGTCGTTGTGAGCA
TGGGCCATAAAGTGGTTGAGGGCTACATGGCTTGTTCGATCTCGACGCAC
CCCTACATGGCACACAGATACAACCACGACTGGGGCTCAGTGGATCTGGT
GGATAATGACCCTAGAGAGACATCAATGCGAATGGGAGGGCTCAATCAAG
AAGAGGAAGACAGGAAACGGAGGAGGGCTCTCTCATTCTGACAGTTGGGA
AAAGTTTCTTTGGGTCGTTTTTTGGTCCCCGCACGACGACGCTTTCTTTG
TTCTTCGTTGCCGCATGTTGATGATGGTATGCAATTTCGTCTTTGAATCA
GGAAAATAACTGATGAGCGCTTTACAGCTATTATGTCCAAGGCCCTAAGC
AAATATGCTGTGTGTCTCGAACCGGTCTGACCATTTGCGCAAGCAAGTGT
CTGGCCTTTCCTACATCATCTTGCCCCCTTCATCATCTTCCCGGCTTCCA
CCCTTCTTTTTTTCCCCAACTGGAAGCTTTCCGCTGTCAAGCTACCCATT
TGGAGTATGGAAACTCCTCGTATCTAGCGAATTCGATTTTTAATCGACGC
AAAACGATACTCGAACGGCACAAGCAAACAAAAGTGTGAAGCCAGCCAAG
AGGCATAGGATACGGACTTGACATGCAGACAAGAGTGATTCAGCGTGATC
CCGGCACAGAAATACACAGAAATCTCAACAGGGCCTCTCTCATCTGAAGT
GAGGGATGGTGCGTTCAGCAAAGGGCTGAAGCAAGGCTGAAGGAGGAGCG
AAATACAGGAGGCACGGAAACTACACGCTCGCCCCCCCTTGCTTCGCGGG
CATCGCGCCTGGTGGCCCTGCTTGCCCGTCGATGATGTAGAATGTTTGCG
GGGTCAAGTGTCGTGTATCCGACACAACCTTACGATAATTTTTGCAAATA
ATGTAAAAAATACGTAATCTATGAGGCTTTTGTTGCCATGCAGTCATTAG
AAGCCCCTAATTTGCTCCACGTGATCAAAAAGGATAACAATTGGCAACGC
TATCAAAATGTGGTGAGCAGCAGCTCATCATCTCCACGTGAGCATGGAAA
TCGAATCGAATCATGGCCACAATAACATTATTTGTAATTGCAGCTTACCT
GCATATACCGGGCATGTGTGGTTTAAATAAGAAGTGGAAAATTCCCCCCC
ATCTTTTCCACGACGCTCTTAGCGCCGCGCCGTCAACATTCTCACTCCTA
CGGCCTTTCAAGGAGAAGTACTACAGGAGCATACCCACCATCAATAATGT
GATATTTGATTCAGAAGCTTTGTTTCGTGACGGATGATGACCGACAAGTG
ATGATCAATCGATGCTTGATGGGCCACGCGTACTCGCGAGGTTAACGGGC
GTTAATTGCCTGGGCACACGCACACACCAATTCAAGACGTGTCCTTTCCA
CAAGCCAACGTTATCGATTGCATCCTTTGACCAAACAGAGAAACCACATA
ACGGGGGTCACGCGGCAATCAGAGCGACGGGTGTGACTGATATTTCGATC
TTCTTGCGACGCCGCTGAAAGATTCTCT
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Coding sequence (CDS) from alignment at scaffold_8:490670..492347+

>mRNA_3958 ID=mRNA_3958|Name=jgi.p|Nanoce1779_2|585966|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_8:490670..492347+ (Nannochloropsis oceanica)
ATGGCCACAATAACATTATTTGTAATTGCAGCTTACCTGCATATACCGGG
CATGTGTGGTTTAAATAAGAAGTGGAAAATTCCCCCCCATCTTTTCCACG
ACGCTCTTAGCGCCGCGCCGTCAACATTCTCACTCCTACGGCCTTTCAAG
GAGAAGTACTACAGGAGCATACCCACCATCAATAATGTGATATTTGATTC
AGAAGCTTTGTTTCGTGACGGATGA
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Synonyms
Publications