jgi.p|Nanoce1779_2|585963, mRNA_3957 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585963
Unique NamemRNA_3957
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1541
Alignment locationscaffold_8:489029..490743 -

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Properties
Property NameValue
TranscriptId586049
TrackFilteredModels2
ProteinId585963
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:489029..490743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585963gene_3957Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585963mRNA_3957-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3957CDS_3957Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3957 ID=mRNA_3957|Name=jgi.p|Nanoce1779_2|585963|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
AGGAGCAACGCCCTCTTCCATCCCCACTTCAAGTAATTAAGCAAATATGC
GCATCCTCTTCCCCGCGGCTCTTCTGGCCATGGTGCTCGGCATGGCCGCT
GCCTCCAAGCCCCTGCTGCCCCGGACGATGTGGGAGCGCAAGGCCCGCAC
AGACAAGCGTCGCGTTGAGTCCGGTGACAACCCCGCCCTGACCAGCACGG
AAGAGCTCCGCGAGATGCTGAGCATCAACGAGGGCACGCTTGCCGGCTTC
AGCAAGGTTGCCATGGACCTGGTCAGCAAAGTCAATTTTGGGTCCGCGGA
CTCCAGTCAAATTGACCATATATTCAAAACCTTCAAGATCCTGAAGCAGT
CCCCTGCGTACAGCGCGGCGATGGCCCCAAACTCGGGCCTTGATATGACC
GATTTGGGAACGGTAGGTTTGATCGTGATGGTCGTAGTGACCGGAAGGAA
GGTCTTCTACCAGTGCCGTGGCTCCAGCACGCATGCATGTGGCGACGGTG
GCTCGCTTACACTCCTTTCCTCTCTCCTCGTCCTCTTCTTACCCCTCCTC
TTTCTACTCTTCTTTCTCTACCTCATACAATTTTACGGGCTGACATCCAT
CTGACGCCTGAAAACAGAAAAGCAAGGTCCTGGCCGATGCCGTGGGTCAG
TTCGCCAACCTGGCCATTAACTTGCGCGGGGGCATGGCCTCCGCCAATGC
CATGGAAGGGGGTATCAATAGCAAGGTGCTTGAGTTCTTGAAGAAAGGAG
ACGAAGCAACATTGGCCCTTGCCGAGAGGGTGAAGGATGGAGATCATGAG
GCGATTTGGGACTTGCAACAGGCATTTATGTCGACTGAATTCCCGGGGTT
GAATATTAAGGAGCTGCCCGATGATGAGTTCGTGATGGCGGCCCGTCAAT
TCCTGCTGAACGACGAAGGCTTGAGTCGTATGATTGGGGAGGAGAACACC
TTGTCGGTGTTGATGGATGAAGAGTTGTTGTTTAAGAATAACCCGACATT
GACTGGGTTGATGTAAGAAGGGTCGATGGAGGGAATGAAGCTGTGCGATG
ACGGGAGGGGGGGAGGAGGAAGAGTAAGGAGGAATTGAATCGAAACGAAT
AGCAAAATGCCAGGCGCCTTTTTGGAGGGAGGGATGGAGGGAGGAGGAAG
GGAGAAAAGGAGGGATGTTGGGAAAGATTGAATTCTATTTTCGTATCACG
ATGCGCCGGTCATCATTATATTTCATGTTCCCACGTGTGATAGGAAACGA
AATTAGTGGGAGAAAGAAGAGAAAACAAATTCACCGAAAACAAAGGTAGA
AAAGATAGCAAGAGAGAGGAAAAGAGATTTTGTGCGTGCCTTCAAGAGCA
CAGGCAAGAATGAACATGGAGGATAGAGAATTTGTCTCAAAAGGTTATTT
CGTGTTCAGATGAAATATAATTGGGGGAGTGGGGGGAGGAAAAGATGAGG
AAAGGGAATGTAGGGAAGAATCGGGGTCATCCAGGAAGAGGATAAGGAAT
CGAGCGGCAACGGAAAGGAATAAGAAAAATACACAGACCTA
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protein sequence of jgi.p|Nanoce1779_2|585963

>mRNA_3957-protein ID=mRNA_3957-protein|Name=jgi.p|Nanoce1779_2|585963|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MRILFPAALLAMVLGMAAASKPLLPRTMWERKARTDKRRVESGDNPALTS
TEELREMLSINEGTLAGFSKVAMDLVSKVNFGSADSSQIDHIFKTFKILK
QSPAYSAAMAPNSGLDMTDLGTVGLIVMVVVTGRKVFYQCRGSSTHACGD
GGSLTLLSSLLVLFLPLLFLLFFLYLIQFYGLTSI*
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mRNA from alignment at scaffold_8:489029..490743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3957 ID=mRNA_3957|Name=jgi.p|Nanoce1779_2|585963|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at scaffold_8:489029..490743- (Nannochloropsis oceanica)
AGGAGCAACGCCCTCTTCCATCCCCACTTCAAGTAATTAAGCAAATATGC
GCATCCTCTTCCCCGCGGCTCTTCTGGCCATGGTGCTCGGCATGGCCGCT
GCCTCCAAGCCCCTGCTGCCCCGGACGATGTGGGAGCGCAAGGCCCGCAC
AGACAAGCGTCGCGTTGAGTCCGGTGACAACCCCGCCCTGACCAGCACGG
AAGAGCTCCGCGAGATGCTGAGCATCAACGAGGGCACGCTTGCCGGCTTC
AGCAAGGTTGCCATGGACCTGGTCAGGTAAGGCCAATTGTAGAAGAGAGG
GTGGGGTGGGCTGGAAAAAGCTTCTACTACCGTAGCTTTTTCGATGCATG
CGCACAGTTGCAAGCTTATACTCATAATTTACTTTCTCCTCTATCGACTC
ATAATGTTATTTTTCCCTTCACCTTTCAAACATGCTCACCCGGCTTACAG
CAAAGTCAATTTTGGGTCCGCGGACTCCAGTCAAATTGACCATATATTCA
AAACCTTCAAGATCCTGAAGCAGTCCCCTGCGTACAGCGCGGCGATGGCC
CCAAACTCGGGCCTTGATATGACCGATTTGGGAACGGTAGGTTTGATCGT
GATGGTCGTAGTGACCGGAAGGAAGGTCTTCTACCAGTGCCGTGGCTCCA
GCACGCATGCATGTGGCGACGGTGGCTCGCTTACACTCCTTTCCTCTCTC
CTCGTCCTCTTCTTACCCCTCCTCTTTCTACTCTTCTTTCTCTACCTCAT
ACAATTTTACGGGCTGACATCCATCTGACGCCTGAAAACAGAAAAGCAAG
GTCCTGGCCGATGCCGTGGGTCAGTTCGCCAACCTGGCCATTAACTTGCG
CGGGGGCATGGCCTCCGCCAATGCCATGGAAGGGGGTATCAATAGCAAGG
TGCTTGAGTTCTTGAAGAAAGGAGACGAAGCAACATTGGCCCTTGCCGAG
AGGGTGAAGGATGGAGATCATGAGGCGATTTGGGACTTGCAACAGGCATT
TATGTCGACTGAATTCCCGGGGTTGAATATTAAGGAGCTGCCCGATGATG
AGTTCGTGATGGCGGCCCGTCAATTCCTGCTGAACGACGAAGGCTTGAGT
CGTATGATTGGGGAGGAGAACACCTTGTCGGTGTTGATGGATGAAGAGTT
GTTGTTTAAGAATAACCCGACATTGACTGGGTTGATGTAAGAAGGGTCGA
TGGAGGGAATGAAGCTGTGCGATGACGGGAGGGGGGGAGGAGGAAGAGTA
AGGAGGAATTGAATCGAAACGAATAGCAAAATGCCAGGCGCCTTTTTGGA
GGGAGGGATGGAGGGAGGAGGAAGGGAGAAAAGGAGGGATGTTGGGAAAG
ATTGAATTCTATTTTCGTATCACGATGCGCCGGTCATCATTATATTTCAT
GTTCCCACGTGTGATAGGAAACGAAATTAGTGGGAGAAAGAAGAGAAAAC
AAATTCACCGAAAACAAAGGTAGAAAAGATAGCAAGAGAGAGGAAAAGAG
ATTTTGTGCGTGCCTTCAAGAGCACAGGCAAGAATGAACATGGAGGATAG
AGAATTTGTCTCAAAAGGTTATTTCGTGTTCAGATGAAATATAATTGGGG
GAGTGGGGGGAGGAAAAGATGAGGAAAGGGAATGTAGGGAAGAATCGGGG
TCATCCAGGAAGAGGATAAGGAATCGAGCGGCAACGGAAAGGAATAAGAA
AAATACACAGACCTA
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Coding sequence (CDS) from alignment at scaffold_8:489029..490743-

>mRNA_3957 ID=mRNA_3957|Name=jgi.p|Nanoce1779_2|585963|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_8:489029..490743- (Nannochloropsis oceanica)
CAAAGTCAATTTTGGGTCCGCGGACTCCAGTCAAATTGACCATATATTCA
AAACCTTCAAGATCCTGAAGCAGTCCCCTGCGTACAGCGCGGCGATGGCC
CCAAACTCGGGCCTTGATATGACCGATTTGGGAACGGTAGGTTTGATCGT
GATGGTCGTAGTGACCGGAAGGAAGGTCTTCTACCAGTGCCGTGGCTCCA
GCACGCATGCATGTGGCGACGGTGGCTCGCTTACACTCCTTTCCTCTCTC
CTCGTCCTCTTCTTACCCCTCCTCTTTCTACTCTTCTTTCTCTACCTCAT
ACAATTTTACGGGCTGACATCCATCTGAATGCGCATCCTCTTCCCCGCGG
CTCTTCTGGCCATGGTGCTCGGCATGGCCGCTGCCTCCAAGCCCCTGCTG
CCCCGGACGATGTGGGAGCGCAAGGCCCGCACAGACAAGCGTCGCGTTGA
GTCCGGTGACAACCCCGCCCTGACCAGCACGGAAGAGCTCCGCGAGATGC
TGAGCATCAACGAGGGCACGCTTGCCGGCTTCAGCAAGGTTGCCATGGAC
CTGGTCAGCAAAGTCAATTTTGGGTCCGCGGACTCCAGTCAAATTGACCA
TATATTCAAAACCTTCAAGATCCTGAAGCAGTCCCCTGCGTACAGCGCGG
CGATGGCCCCAAACTCGGGCCTTGATATGACCGATTTGGGAACGGTAGGT
TTGATCGTGATGGTCGTAGTGACCGGAAGGAAGGTCTTCTACCAGTGCCG
TGGCTCCAGCACGCATGCATGTGGCGACGGTGGCTCGCTTACACTCCTTT
CCTCTCTCCTCGTCCTCTTCTTACCCCTCCTCTTTCTACTCTTCTTTCTC
TACCTCATACAATTTTACGGGCTGACATCCATCTGAATGCGCATCCTCTT
CCCCGCGGCTCTTCTGGCCATGGTGCTCGGCATGGCCGCTGCCTCCAAGC
CCCTGCTGCCCCGGACGATGTGGGAGCGCAAGGCCCGCACAGACAAGCGT
CGCGTTGAGTCCGGTGACAACCCCGCCCTGACCAGCACGGAAGAGCTCCG
CGAGATGCTGAGCATCAACGAGGGCACGCTTGCCGGCTTCAGCAAGGTTG
CCATGGACCTGGTCAG
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Synonyms
Publications